Wall clock time and date at job start Mon Mar 30 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99487 * 2 1 4 4 C 1.53005 * 110.45544 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.46967 * 64.67716 * 4 3 2 6 6 C 1.46899 * 111.00046 * 162.61429 * 5 4 3 7 7 C 1.50698 * 109.47275 * 198.76320 * 6 5 4 8 8 H 1.08002 * 119.99957 * 3.71191 * 7 6 5 9 9 C 1.37885 * 120.00031 * 183.71596 * 7 6 5 10 10 N 1.31511 * 119.99981 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99920 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46992 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47240 * 119.99501 * 11 9 7 14 14 H 1.48500 * 109.46766 * 239.99760 * 11 9 7 15 15 C 1.46901 * 111.00279 * 286.56567 * 5 4 3 16 16 C 1.53001 * 109.47605 * 175.10768 * 15 5 4 17 17 C 1.52997 * 109.47164 * 295.11297 * 15 5 4 18 18 C 1.54513 * 110.51124 * 57.39271 * 3 2 1 19 19 C 1.54472 * 104.06160 * 241.21478 * 18 3 2 20 20 O 1.44417 * 104.80645 * 23.98131 * 19 18 3 21 21 C 1.44648 * 105.36958 * 319.56155 * 20 19 18 22 22 H 1.08989 * 109.47506 * 300.00004 * 1 2 3 23 23 H 1.09003 * 109.47149 * 60.00241 * 1 2 3 24 24 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46920 * 184.68024 * 4 3 2 26 26 H 1.09000 * 109.47004 * 304.67668 * 4 3 2 27 27 H 1.09002 * 109.46981 * 318.76450 * 6 5 4 28 28 H 1.09003 * 109.47102 * 78.75868 * 6 5 4 29 29 H 0.96995 * 120.00216 * 180.02562 * 10 9 7 30 30 H 1.09002 * 109.46683 * 55.10752 * 15 5 4 31 31 H 1.09005 * 109.46724 * 68.42262 * 16 15 5 32 32 H 1.08995 * 109.47098 * 188.41836 * 16 15 5 33 33 H 1.08997 * 109.46851 * 308.42687 * 16 15 5 34 34 H 1.09001 * 109.47195 * 59.99679 * 17 15 5 35 35 H 1.09000 * 109.47620 * 179.97438 * 17 15 5 36 36 H 1.09005 * 109.47324 * 299.99546 * 17 15 5 37 37 H 1.09004 * 110.50950 * 359.86498 * 18 3 2 38 38 H 1.09000 * 110.50739 * 122.56899 * 18 3 2 39 39 H 1.09001 * 110.37112 * 142.81235 * 19 18 3 40 40 H 1.09001 * 110.37348 * 265.03602 * 19 18 3 41 41 H 1.09000 * 110.34102 * 281.59490 * 21 20 19 42 42 H 1.08994 * 110.50718 * 159.18285 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5373 1.2111 0.0006 5 7 3.9899 0.5894 -1.2509 6 6 5.4180 0.8464 -1.4800 7 6 5.7430 0.6160 -2.9334 8 1 4.9559 0.3679 -3.6300 9 6 7.0454 0.7219 -3.3737 10 7 8.0038 1.0245 -2.5255 11 14 7.4482 0.4370 -5.1754 12 1 6.2023 0.1135 -5.9160 13 1 8.0592 1.6643 -5.7461 14 1 8.4032 -0.6937 -5.2962 15 6 3.7072 -0.8522 -1.2551 16 6 4.0795 -1.4411 -2.6172 17 6 4.5298 -1.5363 -0.1615 18 6 1.5178 2.1173 1.2191 19 6 0.7869 3.3263 0.5945 20 8 0.3945 2.8806 -0.7219 21 6 1.5181 2.1171 -1.2189 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.9631 2.2110 0.0845 26 1 3.8634 0.6052 0.8460 27 1 5.6485 1.8783 -1.2153 28 1 6.0120 0.1718 -0.8634 29 1 8.9198 1.0994 -2.8353 30 1 2.6460 -1.0148 -1.0667 31 1 5.1622 -1.4134 -2.7413 32 1 3.7337 -2.4732 -2.6735 33 1 3.6082 -0.8562 -3.4070 34 1 4.2645 -1.1168 0.8089 35 1 4.3198 -2.6059 -0.1642 36 1 5.5911 -1.3737 -0.3497 37 1 0.8293 1.5235 1.8204 38 1 2.3624 2.4512 1.8218 39 1 -0.0920 3.5848 1.1852 40 1 1.4597 4.1809 0.5228 41 1 2.3036 2.7852 -1.5721 42 1 1.2009 1.4471 -2.0179 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692800068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:49 Heat of formation + Delta-G solvation = -92.367775 kcal Electronic energy + Delta-G solvation = -21351.180845 eV Core-core repulsion = 18331.386460 eV Total energy + Delta-G solvation = -3019.794385 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.39362 -39.08113 -37.48770 -34.68449 -33.50667 -31.72506 -30.42592 -28.98301 -27.61411 -27.53639 -25.63926 -24.15596 -23.51153 -21.24138 -20.19890 -18.46636 -18.12820 -17.14341 -16.78078 -16.50872 -16.33916 -16.14443 -15.73798 -15.13576 -15.01106 -14.86981 -14.35292 -13.99528 -13.43813 -13.31007 -13.07576 -13.01540 -12.88380 -12.74938 -12.53887 -12.50809 -12.39837 -12.32437 -12.12971 -11.77429 -11.76160 -11.71732 -11.13425 -10.92755 -10.73057 -10.46060 -10.16584 -8.83138 -8.10100 -6.11739 1.41322 1.43508 1.55353 2.45172 2.77441 3.04424 3.22155 3.25348 3.75638 3.78004 3.98122 4.10793 4.27733 4.32870 4.42667 4.54345 4.58690 4.64764 4.66186 4.70280 4.76613 4.81352 4.86177 4.95644 5.01360 5.02476 5.04478 5.10393 5.18458 5.21899 5.32011 5.41862 5.69073 5.78629 5.82614 5.87986 6.21506 6.31037 6.54099 6.76773 7.00587 7.51429 9.00532 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.006286 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.523247 B = 4453.565030 C = 4735.811930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.378 6.378 3 C 0.102 3.898 4 C 0.068 3.932 5 N -0.530 5.530 6 C 0.199 3.801 7 C -0.494 4.494 8 H 0.072 0.928 9 C -0.002 4.002 10 N -0.939 5.939 11 Si 0.953 3.047 12 H -0.263 1.263 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.082 3.918 16 C -0.134 4.134 17 C -0.171 4.171 18 C -0.177 4.177 19 C 0.042 3.958 20 O -0.394 6.394 21 C 0.044 3.956 22 H 0.052 0.948 23 H 0.040 0.960 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.041 0.959 27 H -0.006 1.006 28 H -0.016 1.016 29 H 0.259 0.741 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 -0.205 7.665 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.297 6.297 3 C 0.062 3.938 4 C -0.060 4.060 5 N -0.254 5.254 6 C 0.073 3.927 7 C -0.533 4.533 8 H 0.090 0.910 9 C -0.199 4.199 10 N -0.581 5.581 11 Si 0.780 3.220 12 H -0.187 1.187 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.026 4.026 16 C -0.191 4.191 17 C -0.230 4.230 18 C -0.216 4.216 19 C -0.034 4.034 20 O -0.313 6.313 21 C -0.033 4.033 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.114 0.886 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.012 0.988 28 H 0.001 0.999 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.045 -0.085 7.159 16.662 hybrid contribution 1.409 -0.147 -0.129 1.423 sum -13.636 -0.232 7.030 15.343 Atomic orbital electron populations 1.22906 0.80523 1.03038 1.00833 1.87969 1.20711 1.26489 1.94542 1.22797 0.92881 0.84032 0.94132 1.22126 0.91925 0.99571 0.92395 1.62293 1.19034 1.12231 1.31843 1.19518 0.83478 0.93736 0.95954 1.21698 0.92787 1.44097 0.94690 0.90983 1.25754 0.96554 0.96118 1.01452 1.70085 1.00770 1.51213 1.36070 0.85558 0.78291 0.77438 0.80750 1.18718 1.21021 1.20953 1.21815 1.00220 0.86290 0.94254 1.22051 1.02275 0.98192 0.96624 1.22303 1.00047 1.01149 0.99502 1.23546 1.02279 0.97688 0.98045 1.23557 1.00519 0.95929 0.83392 1.89116 1.38536 1.71453 1.32209 1.23742 0.88575 0.94033 0.96967 0.92905 0.94095 0.88601 0.90537 0.94143 0.98768 0.99865 0.93227 0.87694 0.92643 0.93021 0.93728 0.92951 0.91621 0.94815 0.88486 0.88725 0.86791 0.91692 0.92155 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.97 113.37 1.13 1.63 16 2 O -0.38 -10.74 7.36 -148.98 -1.10 -11.84 16 3 C 0.10 2.90 0.98 -9.77 -0.01 2.89 16 4 C 0.07 2.37 3.91 86.31 0.34 2.70 16 5 N -0.53 -22.01 4.04 -875.52 -3.54 -25.55 16 6 C 0.20 10.22 4.50 85.56 0.38 10.60 16 7 C -0.49 -27.03 6.43 25.60 0.16 -26.86 16 8 H 0.07 3.89 5.60 -2.91 -0.02 3.87 16 9 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 10 N -0.94 -56.26 13.29 21.45 0.28 -55.98 16 11 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 C 0.08 3.15 2.74 44.91 0.12 3.27 16 16 C -0.13 -5.39 7.67 71.98 0.55 -4.84 16 17 C -0.17 -6.34 8.58 71.98 0.62 -5.72 16 18 C -0.18 -3.81 5.95 31.61 0.19 -3.62 16 19 C 0.04 0.88 7.63 72.48 0.55 1.43 16 20 O -0.39 -10.85 10.76 -148.98 -1.60 -12.45 16 21 C 0.04 1.33 5.60 72.49 0.41 1.74 16 22 H 0.05 1.00 6.28 -2.39 -0.02 0.99 16 23 H 0.04 0.97 6.48 -2.39 -0.02 0.95 16 24 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 2.67 7.66 -2.39 -0.02 2.65 16 26 H 0.04 1.40 5.93 -2.39 -0.01 1.39 16 27 H -0.01 -0.32 7.65 -2.39 -0.02 -0.34 16 28 H -0.02 -0.91 5.62 -2.39 -0.01 -0.92 16 29 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.11 3.77 5.08 -2.39 -0.01 3.76 16 31 H 0.05 2.59 5.80 -2.38 -0.01 2.58 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.84 7.04 -2.39 -0.02 1.83 16 34 H 0.05 1.81 6.27 -2.39 -0.01 1.80 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.03 1.45 6.10 -2.38 -0.01 1.44 16 37 H 0.10 1.83 6.32 -2.39 -0.02 1.81 16 38 H 0.09 1.87 7.73 -2.39 -0.02 1.85 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.06 2.04 7.87 -2.39 -0.02 2.02 16 42 H 0.09 2.89 7.59 -2.39 -0.02 2.87 16 Total: -1.00 -62.43 309.78 1.99 -60.44 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.00 Total: 15.28 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 4.91 Total: -16.44 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -3.25 Total: -81.53 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -2.70 Total: -24.29 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -62.43 1.99 -60.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692800068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.927 kcal (2) G-P(sol) polarization free energy of solvation -62.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds