Wall clock time and date at job start Mon Mar 30 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 O 1.42903 * 109.47242 * 119.99479 * 2 1 3 14 14 C 1.42900 * 114.00543 * 270.00308 * 13 2 1 15 15 C 1.52992 * 109.47163 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.50924 * 55.00099 * 15 14 13 17 17 C 1.53096 * 109.50600 * 175.08661 * 15 14 13 18 18 N 1.47018 * 109.25679 * 176.73818 * 17 15 14 19 19 C 1.47023 * 110.79198 * 301.45156 * 18 17 15 20 20 C 1.53100 * 109.25344 * 58.59270 * 19 18 17 21 21 C 1.52998 * 109.50244 * 183.22231 * 20 19 18 22 22 C 1.52994 * 109.50984 * 63.08657 * 20 19 18 23 23 O 1.43013 * 109.50826 * 294.91466 * 15 14 13 24 24 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 25 25 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 26 26 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 28 28 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 29 29 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46816 * 300.00223 * 14 13 2 31 31 H 1.09002 * 109.46675 * 60.00118 * 14 13 2 32 32 H 1.08993 * 109.51209 * 296.71817 * 17 15 14 33 33 H 1.09001 * 109.50793 * 56.85170 * 17 15 14 34 34 H 1.00905 * 110.96227 * 65.22437 * 18 17 15 35 35 H 1.08999 * 109.50088 * 298.65947 * 19 18 17 36 36 H 1.08999 * 109.54195 * 178.54689 * 19 18 17 37 37 H 1.09005 * 109.47208 * 179.78116 * 21 20 19 38 38 H 1.09008 * 109.47018 * 299.77823 * 21 20 19 39 39 H 1.08996 * 109.47520 * 59.77618 * 21 20 19 40 40 H 1.08999 * 109.47308 * 300.21996 * 22 20 19 41 41 H 1.09003 * 109.46739 * 60.21612 * 22 20 19 42 42 H 1.08997 * 109.47228 * 180.21413 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 5.5412 -1.1009 -2.4128 9 14 3.3016 -2.1086 -3.6953 10 1 2.9409 -1.1637 -4.7826 11 1 4.1600 -3.1892 -4.2433 12 1 2.0654 -2.7002 -3.1233 13 8 2.0063 -0.6735 1.1669 14 6 2.2000 0.1830 2.2942 15 6 2.7078 -0.6407 3.4792 16 1 3.6067 -1.1835 3.1867 17 6 3.0321 0.2925 4.6488 18 7 3.4447 -0.5101 5.8094 19 6 2.3850 -1.4535 6.1949 20 6 2.0684 -2.3691 5.0094 21 6 0.9113 -3.2999 5.3776 22 6 3.3043 -3.2014 4.6622 23 8 1.6985 -1.5703 3.8821 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2617 -2.1370 28 1 1.7517 -1.7715 -1.2055 29 1 6.0256 -1.5077 -3.1483 30 1 2.9319 0.9515 2.0450 31 1 1.2537 0.6547 2.5589 32 1 3.8412 0.9650 4.3644 33 1 2.1473 0.8748 4.9060 34 1 4.3102 -0.9946 5.6239 35 1 1.4895 -0.8996 6.4764 36 1 2.7217 -2.0548 7.0394 37 1 0.6837 -3.9488 4.5319 38 1 1.1938 -3.9084 6.2368 39 1 0.0321 -2.7057 5.6266 40 1 4.1284 -2.5371 4.4020 41 1 3.5856 -3.8099 5.5217 42 1 3.0794 -3.8502 3.8158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695869415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:09 Heat of formation + Delta-G solvation = -101.362293 kcal Electronic energy + Delta-G solvation = -20439.358759 eV Core-core repulsion = 17419.174342 eV Total energy + Delta-G solvation = -3020.184417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20154 -37.57975 -34.50367 -34.20631 -32.93310 -31.42222 -29.35245 -27.84982 -27.53730 -26.13659 -23.69212 -22.70066 -21.69019 -20.03166 -19.63897 -16.75091 -16.56635 -16.50770 -16.17855 -15.38981 -14.76645 -14.60543 -14.34996 -14.16942 -13.44143 -13.12797 -12.82953 -12.45343 -12.36273 -12.28961 -12.01992 -11.96878 -11.85956 -11.82576 -11.64699 -11.57948 -11.16352 -10.93265 -10.91528 -10.60978 -10.48018 -9.84156 -9.75171 -9.58442 -9.16405 -8.68074 -8.48683 -8.27873 -5.98426 -3.94282 3.33563 3.41339 3.46407 3.66263 4.03792 4.23332 4.50248 4.64497 4.78627 4.86222 5.07618 5.16292 5.25095 5.34239 5.42487 5.45907 5.50575 5.55688 5.65652 5.68908 5.72528 5.78386 5.80407 5.88246 5.95755 6.04491 6.08172 6.10775 6.20666 6.30828 6.63838 6.69091 6.76885 7.11744 7.14823 7.30058 7.35861 7.82109 8.11867 8.60159 9.06695 9.63966 11.15383 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.024384 B = 0.005105 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.041364 B = 5483.977857 C = 5651.841104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 H 0.051 0.949 4 C -0.013 4.013 5 C -0.505 4.505 6 H 0.071 0.929 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.265 1.265 13 O -0.358 6.358 14 C 0.075 3.925 15 C 0.056 3.944 16 H 0.072 0.928 17 C 0.028 3.972 18 N -0.681 5.681 19 C 0.033 3.967 20 C 0.071 3.929 21 C -0.133 4.133 22 C -0.179 4.179 23 O -0.356 6.356 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.261 0.739 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.342 0.658 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -0.427 16.367 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.042 3.958 3 H 0.069 0.931 4 C -0.050 4.050 5 C -0.544 4.544 6 H 0.089 0.911 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.190 1.190 13 O -0.277 6.277 14 C -0.003 4.003 15 C -0.004 4.004 16 H 0.090 0.910 17 C -0.102 4.102 18 N -0.310 5.310 19 C -0.097 4.097 20 C 0.030 3.970 21 C -0.191 4.191 22 C -0.237 4.237 23 O -0.275 6.275 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.161 0.839 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.829 -0.203 16.654 18.404 hybrid contribution -0.060 -0.882 -1.453 1.700 sum -7.888 -1.085 15.201 17.161 Atomic orbital electron populations 1.22343 0.98058 1.01968 1.00677 1.22101 0.90913 0.96058 0.86680 0.93102 1.19715 0.97735 0.96415 0.91177 1.21022 0.89604 1.34648 1.09079 0.91090 1.25000 0.94738 0.95943 0.97930 1.69912 1.06495 1.45853 1.32343 0.86817 0.80358 0.80043 0.82319 1.20364 1.21419 1.18996 1.88051 1.86625 1.33887 1.19093 1.22285 0.99182 0.92474 0.86316 1.22837 0.92741 0.91078 0.93721 0.91030 1.22624 1.02472 0.96174 0.88942 1.60948 1.05967 1.27108 1.36929 1.22684 0.96045 0.94109 0.96835 1.22192 0.95651 0.91445 0.87719 1.21676 0.97140 0.98608 1.01693 1.22398 0.97855 1.00728 1.02690 1.88185 1.40490 1.51401 1.47433 0.93716 0.92290 0.92378 0.95771 0.95689 0.92891 0.92139 0.93722 0.89271 0.89939 0.83949 0.90108 0.89902 0.91586 0.91299 0.91932 0.92340 0.91663 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.53 37.15 0.35 -2.65 16 2 C 0.10 2.11 2.66 -26.74 -0.07 2.04 16 3 H 0.05 1.04 7.79 -51.92 -0.40 0.64 16 4 C -0.01 -0.33 3.75 -27.88 -0.10 -0.43 16 5 C -0.51 -14.75 9.43 -34.44 -0.32 -15.08 16 6 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 9 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 13 O -0.36 -7.77 9.71 -39.87 -0.39 -8.16 16 14 C 0.08 1.29 5.41 37.15 0.20 1.49 16 15 C 0.06 0.85 2.68 -26.69 -0.07 0.78 16 16 H 0.07 1.21 6.50 -51.93 -0.34 0.87 16 17 C 0.03 0.34 6.05 -3.71 -0.02 0.32 16 18 N -0.68 -7.62 6.85 -113.49 -0.78 -8.40 16 19 C 0.03 0.35 5.52 -3.70 -0.02 0.33 16 20 C 0.07 0.86 1.11 -90.57 -0.10 0.76 16 21 C -0.13 -1.38 8.85 37.16 0.33 -1.06 16 22 C -0.18 -2.13 8.03 37.15 0.30 -1.83 16 23 O -0.36 -5.67 9.89 -39.87 -0.39 -6.07 16 24 H 0.04 0.69 7.87 -51.93 -0.41 0.28 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 27 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 28 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 29 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 31 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.34 3.60 7.34 -39.29 -0.29 3.31 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.72 5.28 -51.93 -0.27 0.44 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -32.64 328.49 -7.68 -40.32 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.54 Total: 0.98 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 0.37 Total: -13.52 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.00 Total: -36.03 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.78 Total: -14.22 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.64 -7.68 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695869415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.045 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds