Wall clock time and date at job start Mon Mar 30 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99634 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46696 * 90.00211 * 9 7 5 11 11 H 1.48503 * 109.47125 * 210.00238 * 9 7 5 12 12 H 1.48496 * 109.46999 * 330.00355 * 9 7 5 13 13 O 1.42895 * 109.47503 * 240.00043 * 2 1 3 14 14 C 1.42902 * 114.00204 * 89.99725 * 13 2 1 15 15 C 1.53001 * 109.46788 * 180.02562 * 14 13 2 16 16 H 1.08996 * 109.51003 * 55.00742 * 15 14 13 17 17 C 1.53100 * 109.50181 * 175.08726 * 15 14 13 18 18 N 1.47016 * 109.25604 * 176.78473 * 17 15 14 19 19 C 1.47010 * 110.75538 * 301.38363 * 18 17 15 20 20 C 1.53101 * 109.25554 * 58.61278 * 19 18 17 21 21 C 1.53004 * 109.50416 * 63.09195 * 20 19 18 22 22 C 1.53006 * 109.50458 * 183.21615 * 20 19 18 23 23 O 1.43010 * 109.29693 * 303.17631 * 20 19 18 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 28 28 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 29 29 H 0.97001 * 119.99767 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.47054 * 300.00226 * 14 13 2 31 31 H 1.08997 * 109.46428 * 60.00355 * 14 13 2 32 32 H 1.08999 * 109.51006 * 296.71564 * 17 15 14 33 33 H 1.08998 * 109.50871 * 56.80804 * 17 15 14 34 34 H 1.00909 * 110.99944 * 177.60910 * 18 17 15 35 35 H 1.08993 * 109.51248 * 178.55399 * 19 18 17 36 36 H 1.09003 * 109.50466 * 298.68726 * 19 18 17 37 37 H 1.09004 * 109.47194 * 59.99321 * 21 20 19 38 38 H 1.09001 * 109.47237 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.46794 * 300.00093 * 21 20 19 40 40 H 1.08996 * 109.47084 * 60.00823 * 22 20 19 41 41 H 1.09005 * 109.47028 * 180.02562 * 22 20 19 42 42 H 1.08999 * 109.47370 * 300.00248 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 3.5764 -1.8385 3.2991 9 14 6.0922 -1.0622 2.4363 10 1 6.4709 0.1600 3.1899 11 1 6.6443 -2.2578 3.1225 12 1 6.6413 -0.9844 1.0588 13 8 2.0064 -0.6736 -1.1667 14 6 2.2001 0.1830 -2.2941 15 6 2.7080 -0.6409 -3.4791 16 1 2.0197 -1.4636 -3.6721 17 6 2.7992 0.2511 -4.7200 18 7 3.3601 -0.5254 -5.8352 19 6 4.6908 -1.0462 -5.4900 20 6 4.5807 -1.9251 -4.2412 21 6 3.6917 -3.1332 -4.5436 22 6 5.9740 -2.4053 -3.8299 23 8 4.0044 -1.1637 -3.1767 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7517 -1.7714 1.2056 29 1 4.0608 -2.2459 4.0341 30 1 1.2538 0.6546 -2.5588 31 1 2.9320 0.9513 -2.0449 32 1 1.8037 0.6053 -4.9877 33 1 3.4443 1.1039 -4.5087 34 1 3.3958 0.0271 -6.6788 35 1 5.0762 -1.6390 -6.3195 36 1 5.3668 -0.2146 -5.2911 37 1 4.1292 -3.7116 -5.3574 38 1 3.6140 -3.7588 -3.6544 39 1 2.6990 -2.7899 -4.8347 40 1 6.6057 -1.5440 -3.6129 41 1 5.8949 -3.0313 -2.9411 42 1 6.4139 -2.9830 -4.6428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695869434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:17 Heat of formation + Delta-G solvation = -102.270305 kcal Electronic energy + Delta-G solvation = -20560.587381 eV Core-core repulsion = 17540.363590 eV Total energy + Delta-G solvation = -3020.223791 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.88591 -37.45014 -34.58444 -34.04339 -32.88017 -31.17426 -29.35604 -27.28363 -27.22386 -26.09514 -23.76403 -22.91462 -21.55782 -20.02649 -19.15260 -16.74021 -16.33461 -16.14967 -16.01000 -15.04271 -14.64499 -14.53225 -14.25009 -14.14100 -13.85980 -13.31870 -12.75584 -12.43517 -12.19398 -11.95868 -11.90172 -11.79588 -11.74751 -11.60355 -11.50043 -11.23846 -11.01651 -10.76985 -10.61107 -10.49948 -10.06526 -9.95177 -9.46342 -9.30734 -9.03435 -8.58872 -8.51663 -8.23654 -5.86562 -3.85336 3.41034 3.46708 3.53916 3.82343 3.88545 4.39093 4.59164 4.79048 4.94805 5.05830 5.19186 5.23985 5.34540 5.46970 5.50835 5.57142 5.60545 5.62006 5.72846 5.74494 5.85868 5.94166 6.03454 6.04235 6.07518 6.16599 6.22209 6.32270 6.39534 6.47210 6.69790 6.80396 7.01043 7.09895 7.53817 7.63171 7.77387 8.11878 8.26852 8.57050 9.18759 9.76368 11.25406 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.017914 B = 0.006685 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.657125 B = 4187.289893 C = 5274.732639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.045 0.955 4 C 0.024 3.976 5 C -0.499 4.499 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.273 1.273 13 O -0.357 6.357 14 C 0.071 3.929 15 C 0.096 3.904 16 H 0.074 0.926 17 C 0.027 3.973 18 N -0.684 5.684 19 C 0.032 3.968 20 C 0.111 3.889 21 C -0.166 4.166 22 C -0.139 4.139 23 O -0.350 6.350 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.258 0.742 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.343 0.657 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 2.854 -18.390 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.033 3.967 3 H 0.063 0.937 4 C -0.013 4.013 5 C -0.538 4.538 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.197 1.197 13 O -0.275 6.275 14 C -0.007 4.007 15 C 0.038 3.962 16 H 0.092 0.908 17 C -0.103 4.103 18 N -0.315 5.315 19 C -0.097 4.097 20 C 0.071 3.929 21 C -0.223 4.223 22 C -0.196 4.196 23 O -0.269 6.269 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.161 0.839 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.984 2.004 -17.882 18.021 hybrid contribution 1.366 1.150 -0.224 1.799 sum 0.381 3.155 -18.105 18.382 Atomic orbital electron populations 1.22341 0.98271 1.01893 1.00427 1.22399 0.90816 0.96134 0.87349 0.93659 1.19233 0.96351 0.96328 0.89338 1.21147 0.91868 1.33534 1.07228 0.92608 1.24974 0.98159 0.95572 0.95894 1.69965 1.35300 1.36604 1.12319 0.86624 0.86258 0.77258 0.78112 1.20950 1.21367 1.19743 1.88066 1.86603 1.33679 1.19179 1.22289 0.98043 0.93016 0.87367 1.22072 0.86345 0.95700 0.92115 0.90844 1.22546 1.00502 0.95239 0.91972 1.60494 1.23920 1.41385 1.05732 1.22641 0.89733 0.98601 0.98774 1.21515 0.94279 0.90852 0.86293 1.22260 1.00850 0.97514 1.01725 1.21735 0.93863 1.01739 1.02294 1.88261 1.31245 1.69318 1.38109 0.92344 0.94209 0.92198 0.95314 0.95663 0.93228 0.93143 0.93241 0.89676 0.94115 0.83926 0.89962 0.94360 0.92340 0.91848 0.91282 0.92031 0.90958 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.53 37.16 0.35 -2.74 16 2 C 0.09 1.99 2.67 -26.73 -0.07 1.92 16 3 H 0.05 0.97 7.79 -51.93 -0.40 0.57 16 4 C 0.02 0.66 4.68 -27.89 -0.13 0.53 16 5 C -0.50 -14.85 8.88 -34.44 -0.31 -15.16 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -28.04 13.29 55.43 0.74 -27.30 16 9 Si 0.89 22.81 29.54 -169.99 -5.02 17.79 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 13 O -0.36 -7.93 9.71 -39.86 -0.39 -8.32 16 14 C 0.07 1.23 5.41 37.16 0.20 1.44 16 15 C 0.10 1.53 2.68 -26.68 -0.07 1.46 16 16 H 0.07 1.20 6.49 -51.93 -0.34 0.87 16 17 C 0.03 0.33 6.05 -3.71 -0.02 0.31 16 18 N -0.68 -7.47 6.29 -113.50 -0.71 -8.19 16 19 C 0.03 0.37 5.46 -3.71 -0.02 0.35 16 20 C 0.11 1.58 1.11 -90.56 -0.10 1.48 16 21 C -0.17 -2.23 8.17 37.16 0.30 -1.92 16 22 C -0.14 -1.84 8.85 37.16 0.33 -1.51 16 23 O -0.35 -6.45 9.89 -39.86 -0.39 -6.85 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.04 0.61 7.87 -51.93 -0.41 0.20 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.05 0.73 7.87 -51.93 -0.41 0.32 16 31 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.34 2.88 8.90 -39.29 -0.35 2.53 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.95 6.12 -51.93 -0.32 0.64 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -33.25 334.02 -8.06 -41.31 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.68 Total: -1.14 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 0.37 Total: -12.33 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.02 Total: -35.49 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.78 Total: -15.16 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.25 -8.06 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695869434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.957 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds