Wall clock time and date at job start Mon Mar 30 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00206 * 2 1 4 4 C 1.53011 * 109.46951 * 179.97438 * 3 2 1 5 5 C 1.52995 * 110.28766 * 302.12888 * 4 3 2 6 6 O 1.42895 * 109.47401 * 57.86951 * 5 4 3 7 7 C 1.42898 * 114.00309 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47305 * 30.00401 * 7 6 5 9 9 C 1.53000 * 109.47186 * 270.00456 * 7 6 5 10 10 C 1.52998 * 109.47545 * 150.00054 * 7 6 5 11 11 C 1.50702 * 109.47297 * 295.00282 * 10 7 6 12 12 H 1.08009 * 119.99834 * 359.97438 * 11 10 7 13 13 C 1.37877 * 120.00192 * 179.97438 * 11 10 7 14 14 N 1.31514 * 119.99654 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00111 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46895 * 90.00050 * 15 13 11 17 17 H 1.48499 * 109.47446 * 210.00224 * 15 13 11 18 18 H 1.48503 * 109.47161 * 330.00701 * 15 13 11 19 19 C 1.54257 * 110.32060 * 179.97438 * 4 3 2 20 20 C 1.54381 * 105.14978 * 241.05091 * 19 4 3 21 21 N 1.48720 * 104.51692 * 336.27274 * 20 19 4 22 22 C 1.48567 * 104.28820 * 39.36098 * 21 20 19 23 23 H 1.09003 * 109.46910 * 59.99510 * 1 2 3 24 24 H 1.08994 * 109.47828 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47106 * 300.00675 * 1 2 3 26 26 H 1.08996 * 109.47272 * 59.99834 * 3 2 1 27 27 H 1.08999 * 109.47191 * 299.99812 * 3 2 1 28 28 H 1.08997 * 109.47175 * 177.87845 * 5 4 3 29 29 H 1.09007 * 109.46979 * 297.87263 * 5 4 3 30 30 H 1.08999 * 109.47232 * 59.99860 * 9 7 6 31 31 H 1.09004 * 109.47124 * 179.97438 * 9 7 6 32 32 H 1.08993 * 109.46896 * 299.99575 * 9 7 6 33 33 H 1.09007 * 109.47044 * 54.99818 * 10 7 6 34 34 H 1.09003 * 109.47620 * 175.00179 * 10 7 6 35 35 H 0.97004 * 119.99579 * 179.97438 * 14 13 11 36 36 H 1.09002 * 110.32715 * 0.02562 * 19 4 3 37 37 H 1.08998 * 110.32251 * 122.10673 * 19 4 3 38 38 H 1.09004 * 110.40867 * 94.98012 * 20 19 4 39 39 H 1.08996 * 110.41187 * 217.42234 * 20 19 4 40 40 H 1.00898 * 110.92399 * 279.80558 * 21 20 19 41 41 H 1.08999 * 110.41133 * 201.79165 * 22 21 20 42 42 H 1.09004 * 110.50861 * 79.40616 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.0036 0.3820 1.2162 6 8 3.3927 -0.9097 1.1983 7 6 3.7647 -1.7439 2.2972 8 1 3.9837 -1.1237 3.1664 9 6 5.0068 -2.5556 1.9239 10 6 2.6135 -2.6961 2.6273 11 6 1.4283 -1.9020 3.1129 12 1 1.4901 -0.8258 3.1798 13 6 0.2650 -2.5494 3.4717 14 7 0.1900 -3.8599 3.3907 15 14 -1.2039 -1.5651 4.0743 16 1 -2.0597 -1.1952 2.9183 17 1 -1.9907 -2.3850 5.0303 18 1 -0.7291 -0.3326 4.7530 19 6 4.1839 2.5842 0.0000 20 6 5.0085 2.6463 -1.3037 21 7 5.2842 1.2238 -1.6386 22 6 4.0210 0.5169 -1.3039 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6887 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 5.0875 0.2719 1.1835 29 1 3.7190 0.9058 2.1289 30 1 5.8270 -1.8772 1.6888 31 1 5.2908 -3.1916 2.7623 32 1 4.7878 -3.1758 1.0548 33 1 2.3354 -3.2538 1.7329 34 1 2.9286 -3.3912 3.4056 35 1 -0.6284 -4.3153 3.6435 36 1 3.4156 3.3574 -0.0003 37 1 4.8357 2.6999 0.8660 38 1 4.4293 3.1180 -2.0976 39 1 5.9402 3.1873 -1.1388 40 1 6.0537 0.8675 -1.0918 41 1 4.2109 -0.5439 -1.1403 42 1 3.2857 0.6527 -2.0970 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695871019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:58 Heat of formation + Delta-G solvation = -118.853964 kcal Electronic energy + Delta-G solvation = -21061.661259 eV Core-core repulsion = 18040.718347 eV Total energy + Delta-G solvation = -3020.942912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.71589 -38.55449 -37.97894 -35.19729 -33.42709 -32.07580 -29.97926 -29.22582 -27.89049 -26.46881 -25.28225 -24.97515 -22.66668 -21.69846 -20.06176 -18.42877 -17.68436 -17.49848 -16.92223 -16.76471 -16.50259 -16.33151 -15.53046 -15.23742 -14.76879 -14.51063 -14.35299 -13.91920 -13.77806 -13.49909 -13.27491 -13.01655 -12.84343 -12.76430 -12.64367 -12.42866 -12.35649 -12.28015 -12.01065 -11.87510 -11.66447 -11.30285 -11.19133 -11.09389 -10.50454 -10.37001 -10.03044 -9.60129 -8.11622 -6.16580 1.36339 1.37368 1.47554 2.43430 2.85924 3.05669 3.23813 3.35678 3.87310 3.90233 3.91385 4.22046 4.27146 4.32517 4.40580 4.41065 4.48835 4.52798 4.56659 4.59524 4.66240 4.69774 4.74146 4.85313 4.92394 4.95886 5.02225 5.10503 5.20365 5.23170 5.27356 5.29792 5.51509 5.62060 5.75195 5.87715 6.33344 6.43792 6.51547 6.78766 6.94228 7.47863 9.01136 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023177 B = 0.007028 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.799570 B = 3983.264314 C = 4705.751626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.373 6.373 3 C 0.076 3.924 4 C -0.086 4.086 5 C 0.076 3.924 6 O -0.356 6.356 7 C 0.096 3.904 8 H 0.040 0.960 9 C -0.160 4.160 10 C 0.032 3.968 11 C -0.495 4.495 12 H 0.048 0.952 13 C 0.001 3.999 14 N -0.938 5.938 15 Si 0.948 3.052 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.267 1.267 19 C -0.137 4.137 20 C 0.044 3.956 21 N -0.675 5.675 22 C 0.069 3.931 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.026 0.974 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.048 0.952 33 H -0.011 1.011 34 H 0.005 0.995 35 H 0.259 0.741 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.340 0.660 41 H 0.062 0.938 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.422 14.501 -7.698 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.291 6.291 3 C -0.001 4.001 4 C -0.088 4.088 5 C -0.001 4.001 6 O -0.275 6.275 7 C 0.038 3.962 8 H 0.058 0.942 9 C -0.218 4.218 10 C -0.005 4.005 11 C -0.533 4.533 12 H 0.066 0.934 13 C -0.195 4.195 14 N -0.580 5.580 15 Si 0.773 3.227 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.192 1.192 19 C -0.176 4.176 20 C -0.085 4.085 21 N -0.302 5.302 22 C -0.061 4.061 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.008 0.992 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.156 0.844 41 H 0.080 0.920 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.237 14.170 -8.579 18.499 hybrid contribution -1.242 0.116 1.838 2.221 sum 6.995 14.286 -6.741 17.276 Atomic orbital electron populations 1.22591 0.81940 1.01818 0.99322 1.88212 1.18762 1.27048 1.95049 1.22547 0.92731 0.85303 0.99519 1.22026 0.94314 0.96227 0.96266 1.22476 0.95836 0.85256 0.96521 1.88186 1.69467 1.24229 1.45582 1.22060 0.94276 0.91776 0.88122 0.94155 1.22200 0.97411 1.00446 1.01708 1.19043 0.93093 0.93885 0.94455 1.21283 0.98170 0.92916 1.40962 0.93358 1.25763 1.01440 0.95684 0.96624 1.70092 1.28131 1.08939 1.50818 0.85712 0.79760 0.78824 0.78389 1.19687 1.20970 1.19195 1.22870 1.00426 0.93860 1.00491 1.23104 1.00274 0.90247 0.94896 1.63352 1.05503 1.03712 1.57594 1.22766 0.91842 0.97850 0.93680 0.92455 0.91821 0.95485 0.94586 0.92217 0.93245 0.95197 0.91402 0.91786 0.93257 0.99219 0.97698 0.93174 0.89443 0.90143 0.89898 0.88630 0.84404 0.91956 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 11.01 113.37 1.25 2.69 16 2 O -0.37 -14.64 8.39 -127.65 -1.07 -15.71 16 3 C 0.08 2.29 4.52 71.99 0.33 2.62 16 4 C -0.09 -2.31 0.73 -51.29 -0.04 -2.34 16 5 C 0.08 2.44 4.40 71.98 0.32 2.75 16 6 O -0.36 -14.89 7.05 -127.65 -0.90 -15.79 16 7 C 0.10 4.14 2.66 30.59 0.08 4.22 16 8 H 0.04 1.72 7.79 -2.39 -0.02 1.70 16 9 C -0.16 -5.65 9.53 71.98 0.69 -4.97 16 10 C 0.03 1.77 4.68 29.85 0.14 1.91 16 11 C -0.49 -28.82 8.88 25.60 0.23 -28.59 16 12 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.94 -58.42 13.29 21.45 0.28 -58.14 16 15 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 C -0.14 -2.54 6.29 31.49 0.20 -2.35 16 20 C 0.04 0.73 7.48 86.42 0.65 1.38 16 21 N -0.68 -14.52 7.63 -500.44 -3.82 -18.34 16 22 C 0.07 1.85 6.29 86.45 0.54 2.40 16 23 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 24 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 28 H 0.05 1.37 7.87 -2.39 -0.02 1.35 16 29 H 0.03 1.00 8.09 -2.38 -0.02 0.98 16 30 H 0.07 1.97 7.87 -2.39 -0.02 1.95 16 31 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 34 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 36 H 0.09 1.43 7.71 -2.39 -0.02 1.41 16 37 H 0.08 1.37 7.71 -2.39 -0.02 1.35 16 38 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.34 6.70 8.92 -89.70 -0.80 5.90 16 41 H 0.06 2.01 7.43 -2.39 -0.02 1.99 16 42 H 0.07 2.02 7.83 -2.39 -0.02 2.01 16 Total: -1.00 -68.35 335.94 1.53 -66.82 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.17 Total: 13.48 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 4.84 Total: -19.76 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -3.53 Total: -76.47 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.97 Total: -31.50 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -68.35 1.53 -66.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695871019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.031 kcal (2) G-P(sol) polarization free energy of solvation -68.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds