Wall clock time and date at job start Mon Mar 30 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46908 * 109.46940 * 2 1 4 4 C 1.46903 * 110.99677 * 72.86333 * 3 2 1 5 5 C 1.50699 * 109.47288 * 285.94479 * 4 3 2 6 6 H 1.08007 * 119.99530 * 354.58434 * 5 4 3 7 7 C 1.37869 * 120.00326 * 174.58004 * 5 4 3 8 8 N 1.31519 * 119.99834 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00307 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47218 * 60.00215 * 9 7 5 11 11 H 1.48503 * 109.47508 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47198 * 300.00451 * 9 7 5 13 13 C 1.46900 * 110.99635 * 196.81283 * 3 2 1 14 14 H 1.08998 * 110.42815 * 187.95908 * 13 3 2 15 15 C 1.55032 * 110.63563 * 65.47178 * 13 3 2 16 16 C 1.54883 * 102.68277 * 203.43026 * 15 13 3 17 17 H 1.09003 * 110.48510 * 279.02424 * 16 15 13 18 18 C 1.53001 * 110.48784 * 156.51602 * 16 15 13 19 19 O 1.42898 * 109.47033 * 176.83744 * 18 16 15 20 20 C 1.42910 * 113.99730 * 180.02562 * 19 18 16 21 21 C 1.54264 * 104.31758 * 37.77050 * 16 15 13 22 22 C 1.53879 * 106.59818 * 336.45811 * 21 16 15 23 23 H 1.08993 * 110.03489 * 119.27843 * 22 21 16 24 24 O 1.42902 * 110.03541 * 240.66800 * 22 21 16 25 25 H 1.08999 * 109.46486 * 50.90928 * 1 2 3 26 26 H 1.08999 * 109.46682 * 170.90295 * 1 2 3 27 27 H 1.08995 * 109.47331 * 290.90600 * 1 2 3 28 28 H 1.09000 * 109.47652 * 239.99919 * 2 1 3 29 29 H 1.08998 * 109.46766 * 119.99682 * 2 1 3 30 30 H 1.08998 * 109.47504 * 45.94985 * 4 3 2 31 31 H 1.09000 * 109.46515 * 165.94999 * 4 3 2 32 32 H 0.96995 * 120.00205 * 179.97438 * 8 7 5 33 33 H 1.08993 * 110.87541 * 85.09386 * 15 13 3 34 34 H 1.09007 * 110.69564 * 321.67971 * 15 13 3 35 35 H 1.09004 * 109.47111 * 56.84157 * 18 16 15 36 36 H 1.08999 * 109.47346 * 296.83982 * 18 16 15 37 37 H 1.08999 * 109.46733 * 299.99957 * 20 19 18 38 38 H 1.09000 * 109.46717 * 179.97438 * 20 19 18 39 39 H 1.08994 * 109.46748 * 60.00355 * 20 19 18 40 40 H 1.09002 * 110.03370 * 95.73744 * 21 16 15 41 41 H 1.08998 * 110.03614 * 217.12730 * 21 16 15 42 42 H 0.96702 * 113.99294 * 298.54390 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8141 2.0160 1.3106 5 6 0.3527 2.3371 1.4899 6 1 -0.3390 2.1775 0.6759 7 6 -0.1013 2.8345 2.6929 8 7 0.7411 3.0292 3.6840 9 14 -1.9129 3.2318 2.9154 10 1 -2.7185 2.0015 2.7090 11 1 -2.1414 3.7489 4.2886 12 1 -2.3191 4.2613 1.9254 13 6 3.4329 1.4438 -0.3967 14 1 3.8251 2.4514 -0.2592 15 6 3.6059 0.9938 -1.8702 16 6 5.0855 0.5382 -1.9151 17 1 5.7464 1.3982 -2.0238 18 6 5.3061 -0.4530 -3.0595 19 8 6.6902 -0.8021 -3.1272 20 6 7.0058 -1.7280 -4.1691 21 6 5.3143 -0.1498 -0.5534 22 6 4.2635 0.4260 0.4120 23 1 3.6194 -0.3717 0.7818 24 8 4.9099 1.0796 1.5061 25 1 -0.3632 0.6480 -0.7976 26 1 -0.3633 -1.0148 -0.1625 27 1 -0.3634 0.3667 0.9599 28 1 1.8935 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.1353 1.3331 2.0971 31 1 2.3976 2.9350 1.3668 32 1 0.4218 3.3794 4.5302 33 1 3.4373 1.8265 -2.5529 34 1 2.9387 0.1630 -2.1001 35 1 5.0004 0.0045 -4.0005 36 1 4.7133 -1.3504 -2.8824 37 1 6.4482 -2.6518 -4.0153 38 1 8.0746 -1.9414 -4.1539 39 1 6.7354 -1.2964 -5.1327 40 1 5.1801 -1.2270 -0.6521 41 1 6.3177 0.0693 -0.1882 42 1 5.4647 0.4953 2.0410 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698769636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:31 Heat of formation + Delta-G solvation = -94.171953 kcal Electronic energy + Delta-G solvation = -20457.818218 eV Core-core repulsion = 17437.945598 eV Total energy + Delta-G solvation = -3019.872620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.53553 -37.81470 -35.75811 -34.66179 -32.39021 -30.20035 -28.71701 -27.93761 -26.83760 -25.65841 -23.59177 -22.44864 -21.28295 -20.04508 -18.62457 -16.84513 -16.51215 -16.35887 -16.13485 -15.53862 -14.95864 -14.67645 -14.42128 -14.07643 -13.47223 -13.20344 -12.84069 -12.27826 -12.22875 -12.04548 -11.85576 -11.59046 -11.35271 -11.20320 -11.07389 -10.95388 -10.84629 -10.58298 -10.47955 -10.36275 -10.22799 -10.08696 -9.82117 -9.42736 -9.29315 -8.99160 -8.30315 -7.19409 -5.92295 -3.91428 3.37270 3.41825 3.44212 3.61163 4.47148 4.52847 4.69195 4.81747 4.91432 5.09963 5.13130 5.22112 5.34021 5.38945 5.40892 5.43256 5.58466 5.65448 5.69093 5.80216 5.92201 5.95649 5.96576 6.15259 6.21586 6.29725 6.41322 6.42620 6.61146 6.67780 6.93448 7.02648 7.30848 7.46406 7.54373 7.91476 8.07961 8.22817 8.29543 8.65034 9.14685 9.69109 11.17856 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.004735 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.324376 B = 5911.784565 C = 6312.399084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 N -0.525 5.525 4 C 0.198 3.802 5 C -0.505 4.505 6 H 0.071 0.929 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.092 3.908 14 H 0.091 0.909 15 C -0.107 4.107 16 C -0.089 4.089 17 H 0.083 0.917 18 C 0.069 3.931 19 O -0.391 6.391 20 C 0.031 3.969 21 C -0.142 4.142 22 C 0.062 3.938 23 H 0.061 0.939 24 O -0.554 6.554 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.001 0.999 31 H 0.024 0.976 32 H 0.260 0.740 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.379 -9.588 -12.275 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.066 4.066 3 N -0.248 5.248 4 C 0.073 3.927 5 C -0.544 4.544 6 H 0.089 0.911 7 C -0.148 4.148 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.018 4.018 14 H 0.109 0.891 15 C -0.145 4.145 16 C -0.108 4.108 17 H 0.102 0.898 18 C -0.007 4.007 19 O -0.310 6.310 20 C -0.065 4.065 21 C -0.180 4.180 22 C 0.001 3.999 23 H 0.079 0.921 24 O -0.358 6.358 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.018 0.982 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.898 -8.647 -12.534 17.636 hybrid contribution -0.264 -0.933 0.841 1.283 sum 8.633 -9.580 -11.693 17.408 Atomic orbital electron populations 1.22084 0.95052 0.98557 1.04982 1.21940 0.96646 0.90068 0.97994 1.62368 1.12761 1.15757 1.33938 1.19715 0.96869 0.93799 0.82301 1.21365 0.93574 1.41535 0.97927 0.91078 1.25001 0.97548 0.96148 0.96117 1.69977 1.34225 1.45831 1.03650 0.86654 0.85561 0.78744 0.76997 1.20312 1.21507 1.20250 1.22561 0.88775 0.98643 0.91840 0.89122 1.22558 0.93621 1.01332 0.96951 1.21919 0.97847 0.97716 0.93278 0.89814 1.22652 0.82082 0.97579 0.98408 1.87898 1.25875 1.63670 1.53536 1.22715 1.01366 0.92148 0.90299 1.22859 0.99922 0.99582 0.95687 1.23482 0.93109 0.96274 0.87034 0.92090 1.86677 1.66227 1.39612 1.43269 0.92808 0.95216 0.89076 0.93203 0.95859 0.98155 0.95747 0.93063 0.90608 0.90728 0.93233 0.93300 0.94244 0.89853 0.94227 0.91964 0.91052 0.78805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.56 37.16 0.32 -2.59 16 2 C 0.06 1.18 4.51 -3.82 -0.02 1.17 16 3 N -0.53 -11.29 4.48 -225.99 -1.01 -12.30 16 4 C 0.20 5.24 4.43 -4.97 -0.02 5.22 16 5 C -0.51 -14.08 6.89 -34.44 -0.24 -14.32 16 6 H 0.07 1.93 5.83 -52.48 -0.31 1.62 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.09 1.69 2.62 -65.97 -0.17 1.52 16 14 H 0.09 1.84 7.78 -51.93 -0.40 1.44 16 15 C -0.11 -1.53 5.83 -24.66 -0.14 -1.67 16 16 C -0.09 -1.14 3.13 -88.96 -0.28 -1.42 16 17 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 18 C 0.07 0.77 5.25 37.16 0.19 0.97 16 19 O -0.39 -4.66 10.58 -35.23 -0.37 -5.03 16 20 C 0.03 0.26 11.01 101.05 1.11 1.38 16 21 C -0.14 -1.93 6.05 -25.61 -0.16 -2.09 16 22 C 0.06 1.04 3.36 -25.61 -0.09 0.95 16 23 H 0.06 1.08 5.46 -51.93 -0.28 0.80 16 24 O -0.55 -10.05 13.23 -35.23 -0.47 -10.52 16 25 H 0.05 1.05 7.87 -51.93 -0.41 0.64 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 2.07 5.58 -51.93 -0.29 1.78 16 28 H 0.05 0.82 5.88 -51.93 -0.31 0.52 16 29 H 0.02 0.47 6.30 -51.93 -0.33 0.15 16 30 H 0.00 0.02 7.78 -51.93 -0.40 -0.39 16 31 H 0.02 0.71 7.77 -51.93 -0.40 0.31 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.04 5.96 -51.93 -0.31 0.73 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.52 8.01 -51.93 -0.42 0.10 16 37 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.79 7.74 -51.93 -0.40 0.39 16 41 H 0.07 0.96 7.96 -51.93 -0.41 0.55 16 42 H 0.37 4.93 9.10 45.56 0.41 5.35 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -31.57 323.83 -7.19 -38.76 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.35 Total: 3.35 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 0.42 Total: -9.48 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.28 Total: -38.69 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.84 Total: -15.55 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.57 -7.19 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698769636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.409 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds