Wall clock time and date at job start Mon Mar 30 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47371 * 2 1 4 4 C 1.46902 * 110.99959 * 74.53538 * 3 2 1 5 5 C 1.50696 * 109.47370 * 285.19771 * 4 3 2 6 6 H 1.08005 * 120.00172 * 354.67249 * 5 4 3 7 7 C 1.37877 * 119.99991 * 174.66424 * 5 4 3 8 8 N 1.31509 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99989 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47029 * 90.00244 * 9 7 5 11 11 H 1.48497 * 109.47378 * 210.00261 * 9 7 5 12 12 H 1.48503 * 109.47424 * 330.00617 * 9 7 5 13 13 C 1.46892 * 111.00024 * 198.49363 * 3 2 1 14 14 H 1.09000 * 110.05878 * 178.49264 * 13 3 2 15 15 C 1.54271 * 110.03694 * 57.07547 * 13 3 2 16 16 C 1.54887 * 104.19357 * 217.10774 * 15 13 3 17 17 H 1.09002 * 110.75641 * 279.61860 * 16 15 13 18 18 C 1.53005 * 110.91164 * 156.32959 * 16 15 13 19 19 O 1.42897 * 109.47190 * 180.12129 * 18 16 15 20 20 C 1.42898 * 114.00202 * 179.97438 * 19 18 16 21 21 C 1.54887 * 102.75249 * 37.94167 * 16 15 13 22 22 C 1.53875 * 110.03379 * 299.90504 * 13 3 2 23 23 H 1.09000 * 110.07736 * 238.59500 * 22 13 3 24 24 O 1.42904 * 110.02984 * 0.02562 * 22 13 3 25 25 H 1.09002 * 109.47412 * 171.54459 * 1 2 3 26 26 H 1.09003 * 109.46746 * 291.54782 * 1 2 3 27 27 H 1.09002 * 109.47163 * 51.54134 * 1 2 3 28 28 H 1.09000 * 109.46711 * 239.99841 * 2 1 3 29 29 H 1.09004 * 109.46938 * 120.00130 * 2 1 3 30 30 H 1.09007 * 109.46737 * 45.19783 * 4 3 2 31 31 H 1.08994 * 109.47217 * 165.19581 * 4 3 2 32 32 H 0.97003 * 119.99768 * 179.97438 * 8 7 5 33 33 H 1.09000 * 110.48395 * 98.42683 * 15 13 3 34 34 H 1.08999 * 110.48156 * 335.78119 * 15 13 3 35 35 H 1.08993 * 109.46921 * 300.12540 * 18 16 15 36 36 H 1.09005 * 109.46782 * 60.12423 * 18 16 15 37 37 H 1.08999 * 109.47367 * 300.00742 * 20 19 18 38 38 H 1.09007 * 109.46823 * 60.00188 * 20 19 18 39 39 H 1.08993 * 109.47537 * 179.97438 * 20 19 18 40 40 H 1.08996 * 110.48246 * 203.37839 * 21 16 15 41 41 H 1.08997 * 110.48941 * 80.73512 * 21 16 15 42 42 H 0.96703 * 114.00039 * 178.61941 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8505 2.0032 1.3218 5 6 0.3973 2.3392 1.5369 6 1 -0.3143 2.1957 0.7371 7 6 -0.0240 2.8296 2.7547 8 7 0.8425 3.0046 3.7284 9 14 -1.8252 3.2468 3.0211 10 1 -2.5394 2.0509 3.5359 11 1 -1.9369 4.3522 4.0063 12 1 -2.4315 3.6688 1.7328 13 6 3.4214 1.4477 -0.4350 14 1 3.7606 2.4834 -0.4549 15 6 3.5692 0.8163 -1.8348 16 6 4.9342 0.0865 -1.7800 17 1 5.7540 0.7886 -1.9326 18 6 4.9915 -1.0427 -2.8108 19 8 6.2601 -1.6957 -2.7320 20 6 6.4180 -2.7727 -3.6578 21 6 4.9599 -0.4830 -0.3399 22 6 4.3057 0.6217 0.5154 23 1 5.0741 1.2559 0.9575 24 8 3.5047 0.0346 1.5430 25 1 -0.3634 -1.0165 -0.1511 26 1 -0.3633 0.3775 0.9559 27 1 -0.3633 0.6392 -0.8047 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1806 1.3074 2.0933 31 1 2.4459 2.9146 1.3756 32 1 0.5462 3.3500 4.5850 33 1 3.5805 1.5897 -2.6028 34 1 2.7637 0.1055 -2.0195 35 1 4.1990 -1.7624 -2.6057 36 1 4.8571 -0.6293 -3.8105 37 1 5.6551 -3.5282 -3.4699 38 1 6.3130 -2.3956 -4.6752 39 1 7.4063 -3.2155 -3.5351 40 1 5.9862 -0.6578 -0.0172 41 1 4.3791 -1.4036 -0.2833 42 1 4.0020 -0.5166 2.1627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698769639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:34 Heat of formation + Delta-G solvation = -78.326670 kcal Electronic energy + Delta-G solvation = -20770.996214 eV Core-core repulsion = 17751.810697 eV Total energy + Delta-G solvation = -3019.185517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.61948 -37.83202 -35.09509 -34.80044 -32.26245 -30.19716 -28.60013 -27.91185 -26.71194 -25.57799 -23.73286 -22.21689 -20.76937 -19.99877 -18.75243 -17.20321 -16.41526 -16.20740 -15.87793 -15.54763 -14.97387 -14.70440 -14.23767 -13.89664 -13.46649 -13.40629 -12.58670 -12.40893 -12.00103 -11.87823 -11.65710 -11.62500 -11.12756 -11.09347 -10.94170 -10.77307 -10.71930 -10.54236 -10.43832 -10.31080 -10.23077 -9.93653 -9.77247 -9.28717 -9.06709 -8.77128 -8.18417 -6.82370 -5.84289 -3.80875 3.39858 3.46067 3.50361 3.61958 4.51315 4.59572 4.69763 4.78236 5.07109 5.10056 5.16844 5.33928 5.38666 5.43387 5.46446 5.50038 5.56574 5.67683 5.75565 5.84641 5.95450 6.00346 6.13752 6.19612 6.37252 6.46691 6.55763 6.63859 6.70000 6.91137 7.03450 7.31522 7.43505 7.60617 7.91594 8.06265 8.13037 8.40239 8.52143 8.83405 9.27647 9.78665 11.25771 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.042665 B = 0.004888 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.122606 B = 5726.904626 C = 5970.919241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 N -0.521 5.521 4 C 0.188 3.812 5 C -0.496 4.496 6 H 0.067 0.933 7 C 0.051 3.949 8 N -0.901 5.901 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.090 3.910 14 H 0.081 0.919 15 C -0.114 4.114 16 C -0.090 4.090 17 H 0.082 0.918 18 C 0.071 3.929 19 O -0.391 6.391 20 C 0.032 3.968 21 C -0.141 4.141 22 C 0.065 3.935 23 H 0.049 0.951 24 O -0.527 6.527 25 H 0.025 0.975 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.008 0.992 32 H 0.257 0.743 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.799 -9.793 -11.522 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.071 4.071 3 N -0.245 5.245 4 C 0.064 3.936 5 C -0.535 4.535 6 H 0.085 0.915 7 C -0.149 4.149 8 N -0.542 5.542 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 C -0.021 4.021 14 H 0.099 0.901 15 C -0.152 4.152 16 C -0.109 4.109 17 H 0.100 0.900 18 C -0.006 4.006 19 O -0.310 6.310 20 C -0.065 4.065 21 C -0.179 4.179 22 C 0.004 3.996 23 H 0.067 0.933 24 O -0.331 6.331 25 H 0.044 0.956 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.165 -9.059 -11.850 17.507 hybrid contribution -0.088 -0.535 0.825 0.987 sum 9.078 -9.594 -11.025 17.205 Atomic orbital electron populations 1.22099 0.96446 0.98016 1.04276 1.22212 0.95055 0.90133 0.99666 1.62245 1.13110 1.16870 1.32230 1.19934 0.96240 0.93753 0.83700 1.21461 0.94204 1.40523 0.97318 0.91457 1.24960 0.97135 0.96504 0.96301 1.69974 1.33573 1.47008 1.03638 0.86655 0.85957 0.77885 0.77840 1.20926 1.21539 1.19947 1.22383 0.90391 0.97596 0.91689 0.90121 1.22582 0.95487 0.99630 0.97459 1.22025 0.98914 0.95912 0.94075 0.90011 1.22571 0.85112 0.94299 0.98569 1.87881 1.35589 1.48131 1.59395 1.22710 1.01871 0.89498 0.92427 1.23071 1.00671 0.99161 0.95027 1.23396 0.93593 0.93622 0.88992 0.93327 1.87140 1.35800 1.68084 1.42117 0.95632 0.89472 0.93641 0.94209 0.91787 0.94416 0.97346 0.93375 0.91326 0.89979 0.93213 0.93352 0.94192 0.94273 0.89866 0.91861 0.90995 0.79949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.64 37.16 0.32 -2.78 16 2 C 0.06 1.14 4.76 -3.82 -0.02 1.12 16 3 N -0.52 -11.33 4.50 -226.74 -1.02 -12.35 16 4 C 0.19 4.96 4.10 -4.98 -0.02 4.94 16 5 C -0.50 -14.06 6.99 -34.44 -0.24 -14.30 16 6 H 0.07 1.89 5.94 -52.48 -0.31 1.58 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.09 1.61 2.98 -66.60 -0.20 1.41 16 14 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 15 C -0.11 -1.64 5.69 -25.07 -0.14 -1.78 16 16 C -0.09 -1.14 3.17 -88.63 -0.28 -1.42 16 17 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 18 C 0.07 0.80 5.38 37.16 0.20 1.00 16 19 O -0.39 -4.67 10.55 -35.23 -0.37 -5.04 16 20 C 0.03 0.27 11.01 101.05 1.11 1.38 16 21 C -0.14 -1.90 5.85 -25.07 -0.15 -2.04 16 22 C 0.07 1.05 3.79 -25.61 -0.10 0.96 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 O -0.53 -9.50 6.55 -35.23 -0.23 -9.73 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.09 2.06 5.56 -51.93 -0.29 1.78 16 27 H 0.04 0.93 7.99 -51.93 -0.41 0.52 16 28 H 0.04 0.71 5.35 -51.93 -0.28 0.43 16 29 H 0.06 1.37 5.20 -51.92 -0.27 1.10 16 30 H 0.04 1.07 5.50 -51.93 -0.29 0.78 16 31 H 0.01 0.24 7.88 -51.93 -0.41 -0.17 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.23 5.40 -51.93 -0.28 0.95 16 35 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.00 7.95 -51.93 -0.41 0.59 16 42 H 0.35 4.96 9.10 45.56 0.41 5.38 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -31.50 317.16 -7.05 -38.55 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.31 Total: 3.39 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.39 Total: -10.14 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.28 Total: -38.90 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.60 Total: -14.77 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.50 -7.05 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698769639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.775 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds