Wall clock time and date at job start Mon Mar 30 2020 04:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 N 1.46497 * 109.47239 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99944 * 264.51035 * 4 3 2 6 6 H 1.08000 * 119.99913 * 146.58167 * 5 4 3 7 7 C 1.38816 * 120.00178 * 326.58783 * 5 4 3 8 8 N 1.31626 * 119.99576 * 337.26567 * 7 5 4 9 9 Si 1.86792 * 120.00275 * 157.26931 * 7 5 4 10 10 H 1.48495 * 109.47637 * 89.99784 * 9 7 5 11 11 H 1.48508 * 109.47273 * 210.00091 * 9 7 5 12 12 H 1.48508 * 109.47246 * 329.99570 * 9 7 5 13 13 C 1.46500 * 120.00049 * 84.50871 * 4 3 2 14 14 H 1.08996 * 110.01564 * 1.39640 * 13 4 3 15 15 C 1.53874 * 110.03249 * 239.99812 * 13 4 3 16 16 C 1.54264 * 106.59892 * 240.71807 * 15 13 4 17 17 H 1.08999 * 110.59926 * 95.12566 * 16 15 13 18 18 C 1.53003 * 110.48399 * 217.71467 * 16 15 13 19 19 O 1.42908 * 109.46867 * 181.22972 * 18 16 15 20 20 C 1.42905 * 113.99343 * 180.02562 * 19 18 16 21 21 C 1.54892 * 104.19772 * 336.39155 * 16 15 13 22 22 C 1.54267 * 110.02957 * 122.83516 * 13 4 3 23 23 H 1.09001 * 110.48760 * 24.21769 * 22 13 4 24 24 O 1.42900 * 110.48427 * 261.57276 * 22 13 4 25 25 H 1.09000 * 109.47558 * 60.00302 * 1 2 3 26 26 H 1.09006 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47225 * 299.99652 * 1 2 3 28 28 H 1.09001 * 109.47217 * 239.99891 * 2 1 3 29 29 H 1.09004 * 109.47569 * 120.00189 * 2 1 3 30 30 H 1.09001 * 109.47175 * 59.99865 * 3 2 1 31 31 H 1.09000 * 109.46669 * 300.00242 * 3 2 1 32 32 H 0.96994 * 119.99628 * 180.02562 * 8 7 5 33 33 H 1.09004 * 110.02949 * 121.43015 * 15 13 4 34 34 H 1.08999 * 110.07132 * 0.02611 * 15 13 4 35 35 H 1.09003 * 109.47007 * 301.22750 * 18 16 15 36 36 H 1.08997 * 109.47266 * 61.22707 * 18 16 15 37 37 H 1.08999 * 109.47009 * 299.99439 * 20 19 18 38 38 H 1.08995 * 109.47361 * 60.00014 * 20 19 18 39 39 H 1.09007 * 109.46245 * 179.97438 * 20 19 18 40 40 H 1.08993 * 110.75877 * 156.26142 * 21 16 15 41 41 H 1.09007 * 110.75365 * 279.62763 * 21 16 15 42 42 H 0.96703 * 113.99918 * 183.76922 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.5558 1.1796 6 1 5.1363 1.0505 1.3054 7 6 3.6685 2.3201 2.2144 8 7 2.7958 3.2707 1.9552 9 14 4.2053 1.9997 3.9746 10 1 5.3931 2.8334 4.2896 11 1 3.0975 2.3464 4.9009 12 1 4.5520 0.5643 4.1329 13 6 4.2369 1.3213 -1.2638 14 1 3.5365 1.2664 -2.0971 15 6 5.1265 0.0661 -1.2392 16 6 6.5807 0.5532 -1.4062 17 1 7.0599 0.6704 -0.4343 18 6 7.3747 -0.4208 -2.2792 19 8 8.7239 0.0355 -2.3960 20 6 9.5552 -0.8074 -3.1963 21 6 6.4431 1.9251 -2.1119 22 6 5.1816 2.5274 -1.4449 23 1 5.4327 2.9639 -0.4782 24 8 4.5845 3.5068 -2.2973 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 2.4316 3.8050 2.6782 33 1 4.8583 -0.5978 -2.0611 34 1 5.0138 -0.4537 -0.2878 35 1 7.3640 -1.4102 -1.8219 36 1 6.9218 -0.4732 -3.2693 37 1 9.5898 -1.8050 -2.7584 38 1 9.1475 -0.8674 -4.2054 39 1 10.5624 -0.3923 -3.2358 40 1 7.3166 2.5479 -1.9193 41 1 6.2889 1.7948 -3.1831 42 1 5.1580 4.2606 -2.4922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698809362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:29 Heat of formation + Delta-G solvation = -112.075901 kcal Electronic energy + Delta-G solvation = -20629.750771 eV Core-core repulsion = 17609.101778 eV Total energy + Delta-G solvation = -3020.648993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29341 -38.56734 -37.17632 -35.82269 -34.11127 -32.71215 -29.85909 -28.74461 -27.40022 -27.27296 -25.20638 -23.93227 -21.92003 -21.36434 -20.68112 -18.42756 -18.14609 -17.33958 -17.02579 -16.66363 -16.15102 -15.92585 -15.58992 -15.33210 -14.74339 -14.54146 -14.30089 -14.21122 -13.55839 -13.22014 -13.19084 -12.96281 -12.78436 -12.62387 -12.50479 -12.33965 -12.12896 -12.05169 -11.94799 -11.74733 -11.52616 -11.43117 -11.25367 -11.17173 -10.70858 -10.50172 -10.38490 -8.52182 -7.76959 -5.32421 1.44876 1.48287 1.56727 2.53167 2.87548 3.28169 3.39294 3.62498 3.84304 4.00986 4.12598 4.34908 4.40254 4.47807 4.48728 4.56247 4.59926 4.65762 4.68796 4.70592 4.75721 4.81854 4.87576 4.90174 5.04222 5.07339 5.12570 5.13313 5.28363 5.35326 5.42772 5.46269 5.51160 5.62560 5.75085 5.94281 6.30828 6.51871 7.02789 7.22140 7.94480 8.46133 9.20283 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.006704 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.758529 B = 4175.575520 C = 4673.573622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.146 3.854 4 N -0.589 5.589 5 C -0.245 4.245 6 H 0.061 0.939 7 C -0.042 4.042 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.288 1.288 11 H -0.294 1.294 12 H -0.271 1.271 13 C 0.170 3.830 14 H 0.055 0.945 15 C -0.110 4.110 16 C -0.081 4.081 17 H 0.062 0.938 18 C 0.077 3.923 19 O -0.416 6.416 20 C 0.025 3.975 21 C -0.126 4.126 22 C 0.087 3.913 23 H 0.038 0.962 24 O -0.581 6.581 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.008 0.992 32 H 0.248 0.752 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -8.045 -9.858 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.020 3.980 4 N -0.308 5.308 5 C -0.376 4.376 6 H 0.078 0.922 7 C -0.239 4.239 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.215 1.215 11 H -0.220 1.220 12 H -0.196 1.196 13 C 0.063 3.937 14 H 0.074 0.926 15 C -0.150 4.150 16 C -0.100 4.100 17 H 0.081 0.919 18 C 0.001 3.999 19 O -0.336 6.336 20 C -0.071 4.071 21 C -0.164 4.164 22 C 0.027 3.973 23 H 0.056 0.944 24 O -0.387 6.387 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.027 0.973 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.528 -8.191 -9.634 14.231 hybrid contribution 0.508 0.533 1.079 1.306 sum 7.036 -7.659 -8.556 13.467 Atomic orbital electron populations 1.21636 0.95164 1.01640 1.01171 1.21931 0.95768 0.98839 1.00184 1.20932 0.83345 0.93940 0.99765 1.44176 1.01211 1.84034 1.01384 1.19101 1.05163 1.22403 0.90908 0.92165 1.25699 1.00690 0.95405 1.02097 1.70170 1.34743 1.20063 1.31359 0.85572 0.76969 0.78179 0.81530 1.21460 1.22035 1.19632 1.21070 0.92644 0.91758 0.88271 0.92635 1.22392 0.93044 0.97551 1.01989 1.21728 0.94903 0.94851 0.98512 0.91936 1.22567 0.81742 0.96554 0.99016 1.87864 1.21746 1.51603 1.72338 1.22917 0.95212 0.94624 0.94334 1.22974 0.96950 0.96555 0.99960 1.23274 0.93121 0.89682 0.91223 0.94368 1.86461 1.46470 1.35671 1.70101 0.92729 0.91472 0.93990 0.93040 0.94088 0.91454 0.97316 0.94296 0.90269 0.91953 0.92423 0.91964 0.93304 0.93081 0.88698 0.91606 0.90146 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.91 71.98 0.71 -3.84 16 2 C -0.13 -5.08 6.25 30.59 0.19 -4.89 16 3 C 0.15 7.13 5.19 86.38 0.45 7.58 16 4 N -0.59 -29.17 2.40 -674.02 -1.61 -30.78 16 5 C -0.25 -13.16 7.62 84.03 0.64 -12.52 16 6 H 0.06 3.20 7.31 -2.91 -0.02 3.18 16 7 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 8 N -0.92 -54.41 11.34 21.65 0.25 -54.16 16 9 Si 0.95 44.94 29.61 68.60 2.03 46.97 16 10 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 C 0.17 7.18 3.18 45.72 0.15 7.33 16 14 H 0.06 2.37 7.82 -2.39 -0.02 2.36 16 15 C -0.11 -3.82 5.72 31.32 0.18 -3.64 16 16 C -0.08 -2.56 3.15 -9.72 -0.03 -2.59 16 17 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 18 C 0.08 1.95 5.21 71.98 0.38 2.32 16 19 O -0.42 -10.92 10.54 -148.98 -1.57 -12.49 16 20 C 0.03 0.44 11.01 113.37 1.25 1.69 16 21 C -0.13 -4.07 5.88 31.89 0.19 -3.88 16 22 C 0.09 3.58 3.81 31.67 0.12 3.71 16 23 H 0.04 1.89 7.00 -2.39 -0.02 1.87 16 24 O -0.58 -23.24 13.38 -148.98 -1.99 -25.23 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.07 3.77 5.33 -2.39 -0.01 3.75 16 31 H 0.01 0.42 8.04 -2.39 -0.02 0.40 16 32 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.08 2.30 7.84 -2.38 -0.02 2.28 16 34 H 0.06 2.39 7.10 -2.39 -0.02 2.38 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 41 H 0.08 2.36 8.02 -2.38 -0.02 2.34 16 42 H 0.38 11.54 9.11 -74.06 -0.67 10.87 16 Total: -1.00 -65.01 333.99 2.03 -62.97 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.30 Total: 23.40 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.64 Total: -10.67 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -1.37 Total: -84.95 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -3.56 Total: -37.72 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.01 2.03 -62.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698809362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.102 kcal (2) G-P(sol) polarization free energy of solvation -65.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds