Wall clock time and date at job start Mon Mar 30 2020 04:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47194 * 2 1 4 4 N 1.46504 * 109.47384 * 180.02562 * 3 2 1 5 5 C 1.36932 * 119.99853 * 266.38420 * 4 3 2 6 6 H 1.08000 * 120.00045 * 147.00578 * 5 4 3 7 7 C 1.38808 * 119.99891 * 326.99732 * 5 4 3 8 8 N 1.31615 * 120.00438 * 337.02527 * 7 5 4 9 9 Si 1.86803 * 119.99654 * 157.02307 * 7 5 4 10 10 H 1.48494 * 109.47169 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46796 * 120.00455 * 9 7 5 12 12 H 1.48499 * 109.47093 * 239.99874 * 9 7 5 13 13 C 1.46497 * 119.99618 * 86.37742 * 4 3 2 14 14 H 1.09000 * 110.06161 * 1.42295 * 13 4 3 15 15 C 1.54265 * 110.03637 * 240.00092 * 13 4 3 16 16 C 1.54883 * 104.19846 * 217.11016 * 15 13 4 17 17 H 1.09000 * 110.75870 * 279.44377 * 16 15 13 18 18 C 1.53004 * 110.75556 * 156.25564 * 16 15 13 19 19 O 1.42908 * 109.46864 * 175.00116 * 18 16 15 20 20 C 1.42897 * 113.99591 * 180.02562 * 19 18 16 21 21 C 1.54891 * 102.75025 * 37.94009 * 16 15 13 22 22 C 1.53885 * 110.03068 * 122.83597 * 13 4 3 23 23 H 1.09003 * 110.03066 * 238.56886 * 22 13 4 24 24 O 1.42905 * 110.03022 * 359.97438 * 22 13 4 25 25 H 1.09000 * 109.47441 * 60.00125 * 1 2 3 26 26 H 1.08995 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47017 * 299.99845 * 1 2 3 28 28 H 1.08999 * 109.47017 * 240.00155 * 2 1 3 29 29 H 1.09000 * 109.47441 * 119.99874 * 2 1 3 30 30 H 1.09001 * 109.47330 * 59.99724 * 3 2 1 31 31 H 1.09008 * 109.47024 * 300.00463 * 3 2 1 32 32 H 0.96997 * 120.00380 * 179.97438 * 8 7 5 33 33 H 1.08997 * 110.48278 * 98.42696 * 15 13 4 34 34 H 1.09001 * 110.48508 * 335.78663 * 15 13 4 35 35 H 1.08994 * 109.47094 * 55.00177 * 18 16 15 36 36 H 1.09001 * 109.46876 * 294.99496 * 18 16 15 37 37 H 1.08996 * 109.46954 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47167 * 299.99500 * 20 19 18 39 39 H 1.08998 * 109.47440 * 59.99876 * 20 19 18 40 40 H 1.08999 * 110.48778 * 80.73827 * 21 16 15 41 41 H 1.09004 * 110.48797 * 203.37866 * 21 16 15 42 42 H 0.96702 * 113.99998 * 180.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5172 1.1826 6 1 5.1396 1.0136 1.2896 7 6 3.6645 2.2402 2.2446 8 7 2.7893 3.1972 2.0201 9 14 4.1992 1.8547 3.9924 10 1 5.1849 0.7442 3.9750 11 1 4.8223 3.0597 4.5965 12 1 3.0158 1.4543 4.7952 13 6 4.2369 1.3626 -1.2671 14 1 3.5370 1.3353 -2.1023 15 6 5.1287 0.1040 -1.2837 16 6 6.4123 0.5575 -2.0224 17 1 6.2610 0.5471 -3.1018 18 6 7.6011 -0.3243 -1.6350 19 8 8.7403 0.0419 -2.4164 20 6 9.9114 -0.7259 -2.1317 21 6 6.6107 2.0043 -1.5060 22 6 5.1793 2.5709 -1.4086 23 1 4.9366 3.1299 -2.3123 24 8 5.0644 3.4179 -0.2633 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.4217 3.7022 2.7622 33 1 4.6396 -0.7030 -1.8292 34 1 5.3646 -0.2098 -0.2668 35 1 7.3539 -1.3695 -1.8207 36 1 7.8264 -0.1864 -0.5775 37 1 10.7307 -0.3874 -2.7657 38 1 10.1847 -0.5969 -1.0844 39 1 9.7118 -1.7794 -2.3279 40 1 7.0859 1.9974 -0.5250 41 1 7.2032 2.5841 -2.2138 42 1 5.6342 4.1986 -0.2928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698809384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:35 Heat of formation + Delta-G solvation = -76.557156 kcal Electronic energy + Delta-G solvation = -20868.245602 eV Core-core repulsion = 17849.136817 eV Total energy + Delta-G solvation = -3019.108785 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.76237 -37.33931 -35.09339 -34.01949 -32.16848 -30.78661 -28.45775 -27.11883 -26.23281 -25.37042 -23.83287 -22.15246 -20.25843 -19.62135 -19.02102 -16.62438 -16.33915 -16.01212 -15.58808 -15.08376 -14.57607 -14.38720 -13.89159 -13.45399 -13.31833 -13.02908 -12.57207 -12.43868 -12.08657 -11.85216 -11.42290 -11.25014 -11.08752 -10.97791 -10.72358 -10.68303 -10.40368 -10.36516 -10.31815 -10.16711 -9.80471 -9.79177 -9.54591 -9.35934 -9.28037 -8.69730 -8.16282 -6.33251 -5.49193 -2.96383 3.47896 3.56893 3.57463 3.88443 4.66096 5.07454 5.14246 5.19117 5.31882 5.34684 5.51736 5.60082 5.60583 5.68423 5.69676 5.85840 5.92528 5.96263 6.00863 6.07817 6.21923 6.24680 6.32826 6.43963 6.53900 6.62385 6.67553 6.72880 6.79183 6.92824 6.99388 7.02501 7.10152 7.28793 7.40992 7.95809 8.05112 8.72820 8.93127 9.45376 10.08988 10.64275 11.53502 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.017983 B = 0.007131 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.631973 B = 3925.721605 C = 4536.773370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.144 3.856 4 N -0.562 5.562 5 C -0.207 4.207 6 H 0.056 0.944 7 C 0.010 3.990 8 N -0.882 5.882 9 Si 0.882 3.118 10 H -0.281 1.281 11 H -0.295 1.295 12 H -0.293 1.293 13 C 0.176 3.824 14 H 0.053 0.947 15 C -0.126 4.126 16 C -0.088 4.088 17 H 0.075 0.925 18 C 0.071 3.929 19 O -0.393 6.393 20 C 0.032 3.968 21 C -0.141 4.141 22 C 0.085 3.915 23 H 0.028 0.972 24 O -0.485 6.485 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.014 0.986 32 H 0.244 0.756 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 -5.653 -7.948 11.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.018 3.982 4 N -0.280 5.280 5 C -0.337 4.337 6 H 0.074 0.926 7 C -0.188 4.188 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.221 1.221 13 C 0.066 3.934 14 H 0.071 0.929 15 C -0.166 4.166 16 C -0.107 4.107 17 H 0.093 0.907 18 C -0.005 4.005 19 O -0.312 6.312 20 C -0.065 4.065 21 C -0.179 4.179 22 C 0.023 3.977 23 H 0.046 0.954 24 O -0.284 6.284 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.704 -5.845 -7.766 11.270 hybrid contribution 0.885 0.000 0.873 1.243 sum 6.589 -5.846 -6.893 11.185 Atomic orbital electron populations 1.21691 0.97747 0.99729 1.01051 1.22143 0.93516 1.02023 1.00345 1.21051 0.83461 0.91824 1.01854 1.43703 1.00452 1.83565 1.00255 1.18687 1.03934 1.23126 0.87969 0.92618 1.24843 1.00470 0.95518 0.97955 1.70025 1.33532 1.20139 1.28986 0.86547 0.77719 0.77534 0.86886 1.20677 1.22248 1.22059 1.21069 0.91675 0.90301 0.90306 0.92856 1.22860 0.94051 0.99051 1.00624 1.21970 0.93437 0.95269 1.00055 0.90708 1.22641 0.85650 0.97703 0.94545 1.87878 1.19589 1.60428 1.63274 1.22685 0.88254 0.95151 1.00396 1.23084 0.98511 0.95388 1.00897 1.22907 0.93465 0.93174 0.88191 0.95373 1.87453 1.65454 1.35933 1.39572 0.93752 0.94358 0.93097 0.94419 0.92615 0.87980 0.96757 0.94527 0.92863 0.90189 0.93743 0.93107 0.90066 0.94246 0.94446 0.90932 0.92880 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.11 16 2 C -0.14 -2.83 6.26 -26.73 -0.17 -3.00 16 3 C 0.14 3.41 5.23 -4.04 -0.02 3.38 16 4 N -0.56 -13.53 2.12 -164.38 -0.35 -13.88 16 5 C -0.21 -5.48 6.54 -15.06 -0.10 -5.58 16 6 H 0.06 1.51 6.84 -52.49 -0.36 1.15 16 7 C 0.01 0.29 4.90 -17.43 -0.09 0.20 16 8 N -0.88 -25.45 11.29 55.49 0.63 -24.82 16 9 Si 0.88 21.95 29.61 -169.99 -5.03 16.92 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 C 0.18 3.61 3.43 -66.81 -0.23 3.38 16 14 H 0.05 1.06 7.87 -51.93 -0.41 0.65 16 15 C -0.13 -2.26 5.85 -25.08 -0.15 -2.41 16 16 C -0.09 -1.40 3.16 -88.63 -0.28 -1.68 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 18 C 0.07 1.04 5.37 37.16 0.20 1.24 16 19 O -0.39 -5.74 10.65 -35.23 -0.38 -6.11 16 20 C 0.03 0.35 11.01 101.05 1.11 1.46 16 21 C -0.14 -2.42 5.95 -25.07 -0.15 -2.57 16 22 C 0.09 1.67 4.14 -25.61 -0.11 1.56 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 O -0.49 -11.06 10.43 -35.23 -0.37 -11.43 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 2.76 5.28 -51.93 -0.27 2.48 16 31 H 0.01 0.33 8.00 -51.92 -0.42 -0.09 16 32 H 0.24 6.92 8.31 -40.82 -0.34 6.59 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.60 6.40 -51.93 -0.33 1.27 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.77 7.99 -51.93 -0.41 0.36 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 1.36 7.87 -51.93 -0.41 0.95 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.33 6.32 9.11 45.56 0.42 6.73 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -29.91 330.68 -6.95 -36.86 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.83 Total: 3.60 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 0.40 Total: -6.12 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.28 Total: -38.70 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.74 Total: -17.54 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.91 -6.95 -36.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698809384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.702 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds