Wall clock time and date at job start Mon Mar 30 2020 04:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47304 * 2 1 4 4 N 1.46499 * 109.47134 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99821 * 264.50726 * 4 3 2 6 6 H 1.07997 * 119.99817 * 146.35898 * 5 4 3 7 7 C 1.38816 * 120.00113 * 326.36351 * 5 4 3 8 8 N 1.31615 * 119.99860 * 337.47883 * 7 5 4 9 9 Si 1.86794 * 119.99904 * 157.48291 * 7 5 4 10 10 H 1.48507 * 109.47261 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47400 * 119.99505 * 9 7 5 12 12 H 1.48504 * 109.47017 * 239.99777 * 9 7 5 13 13 C 1.46494 * 120.00153 * 84.51032 * 4 3 2 14 14 H 1.09010 * 110.53698 * 2.61104 * 13 4 3 15 15 C 1.54269 * 110.48629 * 240.00297 * 13 4 3 16 16 C 1.53878 * 106.63628 * 217.73444 * 15 13 4 17 17 H 1.09004 * 110.03225 * 119.25936 * 16 15 13 18 18 C 1.52998 * 110.03035 * 240.63786 * 16 15 13 19 19 O 1.42902 * 109.46929 * 185.00256 * 18 16 15 20 20 C 1.42900 * 113.99688 * 180.02562 * 19 18 16 21 21 C 1.54262 * 106.60075 * 359.97380 * 16 15 13 22 22 C 1.54888 * 104.19692 * 23.61006 * 21 16 15 23 23 H 1.09001 * 110.75851 * 203.74252 * 22 21 16 24 24 O 1.42901 * 110.75891 * 80.37244 * 22 21 16 25 25 H 1.08995 * 109.47006 * 300.00723 * 1 2 3 26 26 H 1.08999 * 109.46868 * 60.00098 * 1 2 3 27 27 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47057 * 239.99829 * 2 1 3 29 29 H 1.09005 * 109.46827 * 119.99466 * 2 1 3 30 30 H 1.09007 * 109.47045 * 59.99736 * 3 2 1 31 31 H 1.08999 * 109.47079 * 299.99773 * 3 2 1 32 32 H 0.96999 * 120.00265 * 180.02562 * 8 7 5 33 33 H 1.08994 * 110.03500 * 98.42595 * 15 13 4 34 34 H 1.08998 * 110.02939 * 337.03589 * 15 13 4 35 35 H 1.08994 * 109.47128 * 305.00316 * 18 16 15 36 36 H 1.09003 * 109.47169 * 65.00340 * 18 16 15 37 37 H 1.09006 * 109.47078 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47178 * 299.99412 * 20 19 18 39 39 H 1.09007 * 109.47404 * 60.00168 * 20 19 18 40 40 H 1.08998 * 110.48939 * 142.29036 * 21 16 15 41 41 H 1.08995 * 110.48686 * 264.93094 * 21 16 15 42 42 H 0.96702 * 113.99675 * 61.45175 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.5561 1.1814 6 1 5.1335 1.0479 1.3094 7 6 3.6691 2.3246 2.2138 8 7 2.7968 3.2747 1.9519 9 14 4.2073 2.0102 3.9747 10 1 5.1881 0.8955 4.0011 11 1 4.8365 3.2370 4.5265 12 1 3.0246 1.6479 4.7965 13 6 4.2382 1.3209 -1.2619 14 1 3.5466 1.2866 -2.1039 15 6 5.1338 0.0649 -1.2474 16 6 6.4361 0.4440 -1.9741 17 1 7.2852 0.3369 -1.2990 18 6 6.6287 -0.4465 -3.2032 19 8 7.8953 -0.1645 -3.8019 20 6 8.1754 -0.9464 -4.9647 21 6 6.2869 1.9175 -2.4059 22 6 5.2352 2.4956 -1.4268 23 1 4.7403 3.3646 -1.8604 24 8 5.8377 2.8270 -0.1741 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 2.4335 3.8119 2.6732 33 1 4.6386 -0.7529 -1.7709 34 1 5.3510 -0.2269 -0.2199 35 1 6.5942 -1.4935 -2.9023 36 1 5.8345 -0.2489 -3.9231 37 1 9.1538 -0.6726 -5.3597 38 1 8.1729 -2.0040 -4.7007 39 1 7.4132 -0.7588 -5.7211 40 1 7.2357 2.4437 -2.3010 41 1 5.9268 1.9795 -3.4328 42 1 6.5275 3.5019 -0.2357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698809399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:38 Heat of formation + Delta-G solvation = -81.430403 kcal Electronic energy + Delta-G solvation = -20779.608191 eV Core-core repulsion = 17760.288086 eV Total energy + Delta-G solvation = -3019.320105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.85447 -37.35592 -35.22896 -33.88689 -32.23336 -30.81919 -28.50856 -27.29961 -26.25603 -25.36421 -23.92166 -22.22990 -20.22475 -19.64381 -19.04473 -16.65567 -16.34672 -15.90073 -15.69515 -15.17457 -14.84009 -14.07462 -13.87519 -13.65454 -13.52317 -12.91763 -12.76945 -12.47575 -12.13450 -11.72826 -11.45867 -11.25666 -11.12574 -10.97748 -10.82437 -10.68654 -10.54132 -10.44910 -10.33847 -10.08359 -9.91377 -9.79099 -9.59045 -9.41255 -9.18549 -8.78777 -8.19513 -6.38542 -5.55209 -3.00439 3.49405 3.57968 3.60604 3.86211 4.65803 5.00272 5.09518 5.20757 5.26115 5.34239 5.36361 5.55102 5.57152 5.62012 5.72027 5.74203 5.89140 5.97335 6.03425 6.09395 6.12242 6.26901 6.36740 6.49729 6.51769 6.58556 6.62368 6.65037 6.72458 6.89846 6.95967 7.01081 7.11301 7.27156 7.37240 7.88985 8.12170 8.70057 8.83439 9.43789 10.04920 10.59333 11.49124 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.006641 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.125199 B = 4215.332264 C = 4957.623390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.143 3.857 4 N -0.571 5.571 5 C -0.197 4.197 6 H 0.067 0.933 7 C 0.002 3.998 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.295 1.295 12 H -0.294 1.294 13 C 0.179 3.821 14 H 0.059 0.941 15 C -0.126 4.126 16 C -0.080 4.080 17 H 0.074 0.926 18 C 0.068 3.932 19 O -0.391 6.391 20 C 0.032 3.968 21 C -0.146 4.146 22 C 0.089 3.911 23 H 0.040 0.960 24 O -0.499 6.499 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.015 0.985 32 H 0.247 0.753 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.240 -5.973 -11.016 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C 0.016 3.984 4 N -0.289 5.289 5 C -0.326 4.326 6 H 0.084 0.916 7 C -0.195 4.195 8 N -0.542 5.542 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.222 1.222 12 H -0.221 1.221 13 C 0.070 3.930 14 H 0.077 0.923 15 C -0.166 4.166 16 C -0.099 4.099 17 H 0.092 0.908 18 C -0.008 4.008 19 O -0.310 6.310 20 C -0.065 4.065 21 C -0.184 4.184 22 C 0.027 3.973 23 H 0.058 0.942 24 O -0.300 6.300 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.847 -6.179 -10.587 12.847 hybrid contribution 0.546 0.069 0.374 0.666 sum 4.393 -6.110 -10.212 12.686 Atomic orbital electron populations 1.21695 0.97666 0.99791 1.01089 1.22147 0.93603 1.01873 1.00433 1.21067 0.83468 0.91949 1.01870 1.43886 1.00601 1.83270 1.01113 1.18886 1.03612 1.21498 0.88636 0.91589 1.24920 1.00392 0.95576 0.98613 1.70016 1.34318 1.19677 1.30230 0.86406 0.77642 0.77494 0.86350 1.20486 1.22202 1.22140 1.21346 0.91056 0.90810 0.89832 0.92310 1.22597 0.94056 0.99181 1.00774 1.21621 0.99436 0.94410 0.94452 0.90758 1.22839 0.84555 0.98397 0.95001 1.87906 1.37466 1.62891 1.42773 1.22691 1.00996 0.94912 0.87922 1.23082 0.99924 0.96109 0.99306 1.23222 0.92750 0.96995 0.84325 0.94220 1.87284 1.54704 1.60358 1.27661 0.93057 0.93728 0.94298 0.94356 0.92549 0.88009 0.96642 0.94328 0.93430 0.90123 0.93752 0.93529 0.90037 0.94412 0.94383 0.92141 0.92033 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.14 -2.80 6.26 -26.73 -0.17 -2.97 16 3 C 0.14 3.34 5.20 -4.04 -0.02 3.31 16 4 N -0.57 -13.82 2.49 -163.73 -0.41 -14.23 16 5 C -0.20 -5.27 6.24 -15.06 -0.09 -5.36 16 6 H 0.07 1.84 6.62 -52.49 -0.35 1.49 16 7 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 8 N -0.90 -26.09 11.34 55.49 0.63 -25.46 16 9 Si 0.89 22.29 29.61 -169.99 -5.03 17.26 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 C 0.18 3.66 3.37 -66.23 -0.22 3.44 16 14 H 0.06 1.14 7.92 -51.92 -0.41 0.73 16 15 C -0.13 -2.31 6.06 -25.61 -0.16 -2.46 16 16 C -0.08 -1.30 3.17 -89.50 -0.28 -1.59 16 17 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 18 C 0.07 0.95 4.99 37.16 0.19 1.14 16 19 O -0.39 -5.55 10.56 -35.23 -0.37 -5.92 16 20 C 0.03 0.32 11.01 101.05 1.11 1.43 16 21 C -0.15 -2.36 5.94 -25.08 -0.15 -2.50 16 22 C 0.09 1.75 4.13 -24.70 -0.10 1.64 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 O -0.50 -10.91 10.34 -35.23 -0.36 -11.28 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 2.73 5.33 -51.93 -0.28 2.45 16 31 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.05 0.78 7.67 -51.93 -0.40 0.39 16 34 H 0.08 1.68 6.52 -51.93 -0.34 1.35 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.61 8.01 -51.93 -0.42 0.19 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.92 7.76 -51.93 -0.40 0.52 16 42 H 0.34 5.95 9.11 45.56 0.42 6.37 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -30.20 329.86 -6.99 -37.19 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.80 Total: 3.47 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 0.38 Total: -6.01 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.22 Total: -39.69 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.74 Total: -17.20 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.20 -6.99 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698809399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.237 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds