Wall clock time and date at job start Mon Mar 30 2020 04:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47304 * 2 1 4 4 N 1.46499 * 109.47134 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99821 * 264.50726 * 4 3 2 6 6 H 1.07997 * 119.99817 * 146.35898 * 5 4 3 7 7 C 1.38816 * 120.00113 * 326.36351 * 5 4 3 8 8 N 1.31615 * 119.99860 * 337.47883 * 7 5 4 9 9 Si 1.86794 * 119.99904 * 157.48291 * 7 5 4 10 10 H 1.48507 * 109.47261 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47400 * 119.99505 * 9 7 5 12 12 H 1.48504 * 109.47017 * 239.99777 * 9 7 5 13 13 C 1.46494 * 120.00153 * 84.51032 * 4 3 2 14 14 H 1.09010 * 110.53698 * 2.61104 * 13 4 3 15 15 C 1.54269 * 110.48629 * 240.00297 * 13 4 3 16 16 C 1.53878 * 106.63628 * 217.73444 * 15 13 4 17 17 H 1.09004 * 110.03225 * 119.25936 * 16 15 13 18 18 C 1.52998 * 110.03035 * 240.63786 * 16 15 13 19 19 O 1.42902 * 109.46929 * 185.00256 * 18 16 15 20 20 C 1.42900 * 113.99688 * 180.02562 * 19 18 16 21 21 C 1.54262 * 106.60075 * 359.97380 * 16 15 13 22 22 C 1.54888 * 104.19692 * 23.61006 * 21 16 15 23 23 H 1.09001 * 110.75851 * 203.74252 * 22 21 16 24 24 O 1.42901 * 110.75891 * 80.37244 * 22 21 16 25 25 H 1.08995 * 109.47006 * 300.00723 * 1 2 3 26 26 H 1.08999 * 109.46868 * 60.00098 * 1 2 3 27 27 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47057 * 239.99829 * 2 1 3 29 29 H 1.09005 * 109.46827 * 119.99466 * 2 1 3 30 30 H 1.09007 * 109.47045 * 59.99736 * 3 2 1 31 31 H 1.08999 * 109.47079 * 299.99773 * 3 2 1 32 32 H 0.96999 * 120.00265 * 180.02562 * 8 7 5 33 33 H 1.08994 * 110.03500 * 98.42595 * 15 13 4 34 34 H 1.08998 * 110.02939 * 337.03589 * 15 13 4 35 35 H 1.08994 * 109.47128 * 305.00316 * 18 16 15 36 36 H 1.09003 * 109.47169 * 65.00340 * 18 16 15 37 37 H 1.09006 * 109.47078 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47178 * 299.99412 * 20 19 18 39 39 H 1.09007 * 109.47404 * 60.00168 * 20 19 18 40 40 H 1.08998 * 110.48939 * 142.29036 * 21 16 15 41 41 H 1.08995 * 110.48686 * 264.93094 * 21 16 15 42 42 H 0.96702 * 113.99675 * 61.45175 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.5561 1.1814 6 1 5.1335 1.0479 1.3094 7 6 3.6691 2.3246 2.2138 8 7 2.7968 3.2747 1.9519 9 14 4.2073 2.0102 3.9747 10 1 5.1881 0.8955 4.0011 11 1 4.8365 3.2370 4.5265 12 1 3.0246 1.6479 4.7965 13 6 4.2382 1.3209 -1.2619 14 1 3.5466 1.2866 -2.1039 15 6 5.1338 0.0649 -1.2474 16 6 6.4361 0.4440 -1.9741 17 1 7.2852 0.3369 -1.2990 18 6 6.6287 -0.4465 -3.2032 19 8 7.8953 -0.1645 -3.8019 20 6 8.1754 -0.9464 -4.9647 21 6 6.2869 1.9175 -2.4059 22 6 5.2352 2.4956 -1.4268 23 1 4.7403 3.3646 -1.8604 24 8 5.8377 2.8270 -0.1741 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 2.4335 3.8119 2.6732 33 1 4.6386 -0.7529 -1.7709 34 1 5.3510 -0.2269 -0.2199 35 1 6.5942 -1.4935 -2.9023 36 1 5.8345 -0.2489 -3.9231 37 1 9.1538 -0.6726 -5.3597 38 1 8.1729 -2.0040 -4.7007 39 1 7.4132 -0.7588 -5.7211 40 1 7.2357 2.4437 -2.3010 41 1 5.9268 1.9795 -3.4328 42 1 6.5275 3.5019 -0.2357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698809399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:38 Heat of formation + Delta-G solvation = -101.514760 kcal Electronic energy + Delta-G solvation = -20780.479114 eV Core-core repulsion = 17760.288086 eV Total energy + Delta-G solvation = -3020.191028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27982 -38.53925 -36.97956 -35.42484 -34.00308 -32.60915 -29.88197 -28.75819 -27.30743 -27.24242 -25.21910 -23.90415 -21.88699 -21.21011 -20.57325 -18.36774 -17.78234 -17.33309 -16.90841 -16.62949 -16.19511 -15.87174 -15.46957 -15.21209 -14.95544 -14.46903 -14.31012 -13.88969 -13.52169 -13.13111 -13.06253 -12.74941 -12.74827 -12.49836 -12.40501 -12.29895 -12.18547 -11.99527 -11.85453 -11.70662 -11.50563 -11.48025 -11.20048 -10.93231 -10.58125 -10.36339 -10.23436 -8.37115 -7.62553 -5.09715 1.47105 1.51066 1.59136 2.63963 2.89440 3.33773 3.58774 3.80479 3.96793 4.02199 4.08797 4.37317 4.42890 4.47044 4.52128 4.57092 4.59968 4.61296 4.66678 4.72744 4.83013 4.87239 4.91223 4.94912 5.06850 5.11334 5.16013 5.17517 5.20879 5.31736 5.42254 5.56319 5.57792 5.66477 5.93916 5.99697 6.30878 6.66904 7.29957 7.41649 8.07793 8.56274 9.38174 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.006641 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.125199 B = 4215.332264 C = 4957.623390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.142 3.858 4 N -0.586 5.586 5 C -0.176 4.176 6 H 0.053 0.947 7 C -0.049 4.049 8 N -0.928 5.928 9 Si 0.938 3.062 10 H -0.275 1.275 11 H -0.301 1.301 12 H -0.297 1.297 13 C 0.166 3.834 14 H 0.074 0.926 15 C -0.114 4.114 16 C -0.075 4.075 17 H 0.059 0.941 18 C 0.075 3.925 19 O -0.415 6.415 20 C 0.025 3.975 21 C -0.129 4.129 22 C 0.085 3.915 23 H 0.031 0.969 24 O -0.532 6.532 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.017 0.983 32 H 0.240 0.760 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.695 -7.432 -13.068 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.016 3.984 4 N -0.305 5.305 5 C -0.307 4.307 6 H 0.070 0.930 7 C -0.242 4.242 8 N -0.576 5.576 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.229 1.229 12 H -0.224 1.224 13 C 0.058 3.942 14 H 0.092 0.908 15 C -0.154 4.154 16 C -0.094 4.094 17 H 0.077 0.923 18 C -0.001 4.001 19 O -0.335 6.335 20 C -0.071 4.071 21 C -0.167 4.167 22 C 0.023 3.977 23 H 0.049 0.951 24 O -0.335 6.335 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.323 -7.661 -12.666 15.421 hybrid contribution 0.464 0.505 0.902 1.133 sum 4.787 -7.156 -11.764 14.578 Atomic orbital electron populations 1.21633 0.95170 1.01536 1.01237 1.21952 0.95743 0.99058 1.00087 1.20993 0.83294 0.93880 1.00221 1.44055 1.01077 1.83506 1.01821 1.18834 1.02647 1.19532 0.89673 0.92955 1.25402 1.01518 0.96180 1.01147 1.70135 1.36101 1.21011 1.30339 0.85628 0.77057 0.76962 0.83376 1.20035 1.22890 1.22421 1.21614 0.91667 0.92256 0.88631 0.90824 1.22387 0.94839 0.98575 0.99575 1.21493 0.97585 0.95011 0.95342 0.92285 1.22688 0.85224 0.98097 0.94121 1.87857 1.37345 1.63995 1.44275 1.22915 1.02206 0.95114 0.86880 1.22924 0.99001 0.95655 0.99094 1.23208 0.93694 0.96480 0.84290 0.95103 1.87164 1.55620 1.61235 1.29498 0.94161 0.92387 0.91708 0.92853 0.94575 0.91453 0.96479 0.95109 0.91320 0.93275 0.92805 0.92115 0.88631 0.93398 0.93145 0.91469 0.90121 0.80120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.91 71.98 0.71 -3.69 16 2 C -0.13 -4.99 6.26 30.60 0.19 -4.80 16 3 C 0.14 6.68 5.20 86.38 0.45 7.13 16 4 N -0.59 -28.50 2.49 -671.92 -1.67 -30.18 16 5 C -0.18 -9.58 6.24 84.03 0.52 -9.06 16 6 H 0.05 2.98 6.62 -2.91 -0.02 2.96 16 7 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 8 N -0.93 -55.57 11.34 21.65 0.25 -55.33 16 9 Si 0.94 46.95 29.61 68.60 2.03 48.99 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 C 0.17 6.64 3.37 46.09 0.16 6.80 16 14 H 0.07 2.71 7.92 -2.38 -0.02 2.69 16 15 C -0.11 -4.00 6.06 31.32 0.19 -3.82 16 16 C -0.08 -2.29 3.17 -10.07 -0.03 -2.32 16 17 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 18 C 0.07 1.84 4.99 71.98 0.36 2.20 16 19 O -0.42 -10.52 10.56 -148.98 -1.57 -12.09 16 20 C 0.02 0.42 11.01 113.37 1.25 1.67 16 21 C -0.13 -3.87 5.94 31.67 0.19 -3.68 16 22 C 0.08 3.25 4.13 31.91 0.13 3.38 16 23 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 24 O -0.53 -23.38 10.34 -148.98 -1.54 -24.92 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.07 3.71 5.33 -2.38 -0.01 3.70 16 31 H 0.02 0.77 8.04 -2.39 -0.02 0.75 16 32 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.07 2.09 7.67 -2.39 -0.02 2.07 16 34 H 0.05 2.04 6.52 -2.39 -0.02 2.02 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.34 8.01 -2.39 -0.02 1.32 16 37 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.15 7.76 -2.39 -0.02 2.13 16 42 H 0.35 12.55 9.11 -74.06 -0.67 11.88 16 Total: -1.00 -65.72 329.86 2.33 -63.40 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.30 Total: 18.67 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 4.54 Total: -8.54 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.43 Total: -85.50 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -3.11 Total: -37.01 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.99 kcal Total: -65.72 2.33 -63.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698809399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.119 kcal (2) G-P(sol) polarization free energy of solvation -65.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds