Wall clock time and date at job start Mon Mar 30 2020 04:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 113.99921 * 2 1 4 4 C 1.53006 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.81605 * 56.88412 * 4 3 2 6 6 C 1.54893 * 110.75639 * 293.54766 * 4 3 2 7 7 C 1.54269 * 104.19602 * 203.74155 * 6 4 3 8 8 H 1.08993 * 110.02958 * 142.89169 * 7 6 4 9 9 O 1.42896 * 110.03102 * 264.32490 * 7 6 4 10 10 C 1.53877 * 106.59439 * 23.61050 * 7 6 4 11 11 H 1.09000 * 110.06813 * 240.68914 * 10 7 6 12 12 N 1.46504 * 110.03083 * 119.28597 * 10 7 6 13 13 C 1.36940 * 119.99957 * 302.82890 * 12 10 7 14 14 H 1.08004 * 119.99941 * 28.01743 * 13 12 10 15 15 C 1.38806 * 119.99984 * 208.00954 * 13 12 10 16 16 N 1.31619 * 119.99986 * 17.76520 * 15 13 12 17 17 Si 1.86797 * 119.99986 * 197.75969 * 15 13 12 18 18 H 1.48502 * 109.47466 * 90.00224 * 17 15 13 19 19 H 1.48504 * 109.47500 * 210.00213 * 17 15 13 20 20 H 1.48507 * 109.47238 * 330.00323 * 17 15 13 21 21 C 1.46499 * 120.00245 * 122.82662 * 12 10 7 22 22 C 1.52997 * 109.47352 * 303.96690 * 21 12 10 23 23 C 1.53007 * 109.46657 * 63.96511 * 21 12 10 24 24 C 1.54269 * 106.60206 * 359.97438 * 10 7 6 25 25 H 1.08997 * 109.47251 * 299.99795 * 1 2 3 26 26 H 1.09000 * 109.47530 * 60.00266 * 1 2 3 27 27 H 1.09003 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47184 * 60.00558 * 3 2 1 29 29 H 1.08992 * 109.47238 * 300.00139 * 3 2 1 30 30 H 1.08999 * 110.48561 * 322.42179 * 6 4 3 31 31 H 1.08996 * 110.48539 * 85.06271 * 6 4 3 32 32 H 0.96697 * 114.00307 * 298.54700 * 9 7 6 33 33 H 0.97005 * 119.99640 * 180.02562 * 16 15 13 34 34 H 1.08995 * 109.47277 * 183.96089 * 21 12 10 35 35 H 1.09007 * 109.47092 * 59.99767 * 22 21 12 36 36 H 1.09003 * 109.47378 * 179.97438 * 22 21 12 37 37 H 1.08999 * 109.47369 * 299.99784 * 22 21 12 38 38 H 1.08996 * 109.47103 * 60.00037 * 23 21 12 39 39 H 1.09005 * 109.46569 * 180.02562 * 23 21 12 40 40 H 1.08997 * 109.47399 * 300.00025 * 23 21 12 41 41 H 1.08999 * 110.48185 * 217.70988 * 24 10 7 42 42 H 1.09001 * 110.48161 * 95.07099 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8779 0.5991 -0.8524 6 6 4.0364 0.5648 1.3287 7 6 5.4939 1.0558 1.4494 8 1 5.7300 1.2718 2.4912 9 8 6.3881 0.0646 0.9395 10 6 5.5959 2.3404 0.6084 11 1 6.3277 2.2086 -0.1885 12 7 5.9799 3.4687 1.4604 13 6 5.2142 3.7980 2.5468 14 1 4.6347 3.0378 3.0495 15 6 5.1829 5.1089 3.0021 16 7 5.5856 6.0873 2.2192 17 14 4.5691 5.4845 4.7259 18 1 5.7087 5.4435 5.6772 19 1 3.9536 6.8358 4.7489 20 1 3.5568 4.4728 5.1224 21 6 7.1832 4.2445 1.1501 22 6 8.3912 3.3079 1.0843 23 6 7.0055 4.9432 -0.1995 24 6 4.1970 2.5848 0.0057 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8901 29 1 1.6885 1.8464 -0.8899 30 1 3.4413 0.9267 2.1671 31 1 4.0034 -0.5235 1.2781 32 1 6.3550 -0.7768 1.4148 33 1 5.5640 7.0034 2.5376 34 1 7.3444 4.9915 1.9273 35 1 8.2299 2.5610 0.3069 36 1 9.2864 3.8851 0.8530 37 1 8.5178 2.8102 2.0457 38 1 6.1449 5.6104 -0.1527 39 1 7.9010 5.5201 -0.4306 40 1 6.8443 4.1963 -0.9769 41 1 4.2816 2.9710 -1.0101 42 1 3.6275 3.2730 0.6303 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698810179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:41 Heat of formation + Delta-G solvation = -86.511644 kcal Electronic energy + Delta-G solvation = -21027.408492 eV Core-core repulsion = 18007.868048 eV Total energy + Delta-G solvation = -3019.540444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.90905 -37.41476 -35.74330 -34.23145 -31.80019 -30.42363 -28.13758 -27.25231 -26.15222 -25.88272 -23.98814 -23.02634 -20.06096 -19.69153 -18.89269 -16.44671 -16.39234 -16.18780 -15.70569 -15.11403 -14.64088 -14.47351 -13.85709 -13.73227 -13.34805 -12.80972 -12.47801 -12.26195 -11.89094 -11.72542 -11.58031 -11.33288 -11.20161 -11.09880 -10.86740 -10.81447 -10.70346 -10.35586 -10.18119 -10.02836 -9.88227 -9.82011 -9.53057 -9.50091 -9.31126 -9.07935 -8.37401 -6.64234 -5.78434 -3.21487 3.36359 3.44064 3.44673 3.93509 4.47169 4.82565 5.14453 5.20105 5.29992 5.33883 5.38777 5.51284 5.62367 5.64674 5.72074 5.85887 6.03586 6.17768 6.23698 6.29070 6.32977 6.43684 6.52248 6.59849 6.62761 6.66763 6.70754 6.77900 6.89229 6.95924 7.07322 7.18644 7.24183 7.34582 7.74142 7.75693 7.92004 8.26836 8.50648 9.25688 9.89225 10.42215 11.28050 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.007821 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.811628 B = 3579.371529 C = 4396.759174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.070 3.930 4 C -0.087 4.087 5 H 0.075 0.925 6 C -0.136 4.136 7 C 0.082 3.918 8 H 0.066 0.934 9 O -0.570 6.570 10 C 0.183 3.817 11 H 0.067 0.933 12 N -0.574 5.574 13 C -0.250 4.250 14 H 0.065 0.935 15 C 0.006 3.994 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.280 1.280 21 C 0.180 3.820 22 C -0.163 4.163 23 C -0.143 4.143 24 C -0.121 4.121 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.363 0.637 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.026 0.974 40 H 0.021 0.979 41 H 0.053 0.947 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -8.592 -3.566 10.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.007 4.007 4 C -0.106 4.106 5 H 0.093 0.907 6 C -0.175 4.175 7 C 0.021 3.979 8 H 0.084 0.916 9 O -0.374 6.374 10 C 0.075 3.925 11 H 0.085 0.915 12 N -0.294 5.294 13 C -0.380 4.380 14 H 0.082 0.918 15 C -0.193 4.193 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.215 1.215 19 H -0.219 1.219 20 H -0.206 1.206 21 C 0.074 3.926 22 C -0.222 4.222 23 C -0.202 4.202 24 C -0.161 4.161 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.208 0.792 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.978 -8.051 -3.939 9.806 hybrid contribution -0.834 0.077 1.302 1.548 sum -4.812 -7.974 -2.638 9.680 Atomic orbital electron populations 1.22681 0.81897 1.02140 0.99776 1.87872 1.18961 1.28951 1.95395 1.22661 0.94240 0.83752 1.00003 1.22037 0.91560 0.98563 0.98437 0.90665 1.22950 0.97571 0.99496 0.97441 1.23293 0.86675 0.89115 0.98791 0.91598 1.86516 1.64404 1.25278 1.61239 1.20668 0.93839 0.86370 0.91671 0.91527 1.44071 1.24795 1.32059 1.28504 1.19050 1.23511 0.91834 1.03584 0.91752 1.24977 1.00374 0.95688 0.98228 1.70031 1.51068 0.98726 1.33897 0.86398 0.78428 0.77276 0.85285 1.21545 1.21901 1.20586 1.20321 0.83401 0.92152 0.96693 1.22384 0.99087 1.00181 1.00510 1.22125 1.00873 0.99576 0.97585 1.22816 0.98140 0.94552 1.00584 0.94276 0.94445 0.90127 0.93036 0.93696 0.91375 0.92168 0.79176 0.93745 0.88341 0.94016 0.94474 0.93775 0.90876 0.95518 0.96011 0.92808 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.91 10.55 -35.23 -0.37 -6.28 16 3 C 0.07 1.07 5.36 37.16 0.20 1.27 16 4 C -0.09 -1.46 3.18 -88.64 -0.28 -1.74 16 5 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 6 C -0.14 -2.32 5.86 -25.07 -0.15 -2.47 16 7 C 0.08 1.54 3.57 -25.61 -0.09 1.45 16 8 H 0.07 1.37 6.97 -51.93 -0.36 1.01 16 9 O -0.57 -9.98 13.22 -35.23 -0.47 -10.45 16 10 C 0.18 3.82 2.32 -66.81 -0.16 3.66 16 11 H 0.07 1.44 5.94 -51.93 -0.31 1.13 16 12 N -0.57 -13.56 2.33 -156.88 -0.37 -13.93 16 13 C -0.25 -6.41 7.78 -15.06 -0.12 -6.52 16 14 H 0.06 1.64 7.15 -52.48 -0.38 1.27 16 15 C 0.01 0.16 4.88 -17.43 -0.08 0.08 16 16 N -0.89 -24.37 10.12 55.49 0.56 -23.81 16 17 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.18 4.20 2.33 -67.93 -0.16 4.04 16 22 C -0.16 -3.34 9.12 37.16 0.34 -3.00 16 23 C -0.14 -3.15 9.04 37.16 0.34 -2.81 16 24 C -0.12 -2.34 5.86 -25.09 -0.15 -2.49 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 31 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 32 H 0.36 4.70 9.08 45.56 0.41 5.11 16 33 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.10 2.60 5.83 -51.93 -0.30 2.29 16 35 H 0.04 0.84 6.82 -51.93 -0.35 0.48 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.80 7.24 -51.93 -0.38 1.42 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.44 7.33 -51.93 -0.38 0.06 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.88 7.03 -51.93 -0.36 1.51 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -27.97 326.60 -6.55 -34.52 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.61 Total: 6.05 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 0.80 Total: -7.06 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.20 Total: -37.74 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.84 Total: -16.73 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.97 -6.55 -34.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698810179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.988 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds