Wall clock time and date at job start Mon Mar 30 2020 05:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47293 * 2 1 4 4 C 1.53005 * 109.47536 * 120.00460 * 2 1 3 5 5 C 1.50697 * 109.47277 * 184.99725 * 4 2 1 6 6 H 1.07997 * 119.99883 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99822 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99726 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00125 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47149 * 270.00037 * 9 7 5 11 11 H 1.48494 * 109.46993 * 30.00142 * 9 7 5 12 12 H 1.48505 * 109.47082 * 150.00157 * 9 7 5 13 13 N 1.46905 * 109.46738 * 239.99951 * 2 1 3 14 14 C 1.46908 * 110.99773 * 85.00312 * 13 2 1 15 15 C 1.52996 * 109.46828 * 185.49385 * 14 13 2 16 16 C 1.53002 * 109.52556 * 55.88280 * 15 14 13 17 17 O 1.42904 * 109.47035 * 56.32457 * 16 15 14 18 18 C 1.53174 * 109.52535 * 295.75401 * 15 14 13 19 19 C 1.53178 * 109.03782 * 183.11382 * 18 15 14 20 20 C 1.53098 * 109.16114 * 56.98293 * 19 18 15 21 21 O 1.42903 * 109.41299 * 302.38822 * 20 19 18 22 22 C 1.42906 * 114.09522 * 61.16326 * 21 20 19 23 23 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46733 * 299.99924 * 1 2 3 25 25 H 1.08996 * 109.47024 * 59.99525 * 1 2 3 26 26 H 1.08999 * 109.46973 * 64.99352 * 4 2 1 27 27 H 1.09001 * 109.46470 * 304.99937 * 4 2 1 28 28 H 0.97006 * 119.99476 * 180.02562 * 8 7 5 29 29 H 1.00897 * 111.00078 * 208.95130 * 13 2 1 30 30 H 1.09004 * 109.46497 * 305.49252 * 14 13 2 31 31 H 1.08997 * 109.47128 * 65.48872 * 14 13 2 32 32 H 1.08998 * 109.47588 * 176.32010 * 16 15 14 33 33 H 1.09003 * 109.46897 * 296.33050 * 16 15 14 34 34 H 0.96701 * 113.99962 * 180.02562 * 17 16 15 35 35 H 1.09001 * 109.54191 * 302.98589 * 18 15 14 36 36 H 1.09003 * 109.54047 * 63.15911 * 18 15 14 37 37 H 1.09003 * 109.51929 * 176.88414 * 19 18 15 38 38 H 1.08993 * 109.52580 * 297.01351 * 19 18 15 39 39 H 1.09003 * 109.47603 * 62.37338 * 20 19 18 40 40 H 1.09002 * 109.47933 * 182.41016 * 20 19 18 41 41 H 1.09000 * 109.47885 * 178.85747 * 22 21 20 42 42 H 1.08993 * 109.48494 * 58.82357 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0790 -0.0863 0.5390 7 6 4.2304 -1.1928 2.3581 8 7 5.5412 -1.1005 2.4131 9 14 3.3015 -2.1068 3.6964 10 1 2.9409 -1.1610 4.7829 11 1 2.0653 -2.6988 3.1249 12 1 4.1598 -3.1872 4.2453 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3470 15 6 2.4635 -0.5614 -3.6043 16 6 1.4703 -1.7063 -3.8136 17 8 0.1436 -1.1796 -3.8811 18 6 3.8759 -1.1320 -3.4433 19 6 4.2760 -1.8479 -4.7371 20 6 4.1762 -0.8651 -5.9067 21 8 2.8458 -0.3487 -5.9810 22 6 2.4338 0.3717 -4.8176 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.7517 -1.7716 1.2055 27 1 1.6055 -0.2618 2.1369 28 1 6.0256 -1.5073 3.1485 29 1 2.9172 -1.1205 -1.0289 30 1 1.1088 0.6909 -2.4918 31 1 2.8310 0.9920 -2.1576 32 1 1.7034 -2.2240 -4.7441 33 1 1.5415 -2.4059 -2.9808 34 1 -0.5398 -1.8509 -4.0128 35 1 4.5762 -0.3210 -3.2437 36 1 3.8910 -1.8392 -2.6140 37 1 5.3008 -2.2093 -4.6514 38 1 3.6059 -2.6900 -4.9096 39 1 4.8767 -0.0443 -5.7525 40 1 4.4186 -1.3804 -6.8361 41 1 1.4208 0.7474 -4.9625 42 1 3.1113 1.2086 -4.6493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700950453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:00 Heat of formation + Delta-G solvation = -138.252976 kcal Electronic energy + Delta-G solvation = -20730.927961 eV Core-core repulsion = 17709.143845 eV Total energy + Delta-G solvation = -3021.784117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08070 -38.37679 -37.25010 -35.40762 -34.46144 -33.04463 -31.07485 -29.59633 -26.91094 -26.52807 -25.63626 -24.37752 -22.70500 -21.05297 -19.70956 -18.96481 -18.20706 -17.23641 -17.05131 -16.58713 -16.34837 -16.19691 -15.91666 -15.13316 -14.83884 -14.78398 -14.47205 -14.13034 -13.72721 -13.61939 -13.42222 -13.32771 -13.20382 -12.97081 -12.57461 -12.39663 -12.17430 -12.13648 -11.83151 -11.71800 -11.44989 -11.31524 -11.21454 -11.12360 -10.76742 -10.57629 -10.33085 -9.16383 -8.29085 -6.32036 1.35813 1.37921 1.49900 2.36309 2.90425 3.05469 3.33330 3.56980 3.71934 3.81058 3.99429 4.07834 4.22523 4.27485 4.33707 4.47318 4.50131 4.57624 4.69185 4.71962 4.76989 4.80078 4.86902 4.90109 4.94241 5.03167 5.09748 5.12997 5.13854 5.23451 5.30624 5.31604 5.41177 5.50799 5.67986 6.22448 6.24020 6.39423 6.61797 6.74137 7.05856 7.32424 8.86854 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.005808 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.495028 B = 4819.785963 C = 5517.744712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.098 3.902 3 H 0.015 0.985 4 C -0.012 4.012 5 C -0.522 4.522 6 H 0.033 0.967 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.249 1.249 12 H -0.286 1.286 13 N -0.672 5.672 14 C 0.081 3.919 15 C -0.080 4.080 16 C 0.113 3.887 17 O -0.579 6.579 18 C -0.117 4.117 19 C -0.150 4.150 20 C 0.055 3.945 21 O -0.390 6.390 22 C 0.080 3.920 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.339 0.661 30 H 0.075 0.925 31 H 0.007 0.993 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.389 0.611 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -1.475 -14.978 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.012 4.012 3 H 0.033 0.967 4 C -0.049 4.049 5 C -0.560 4.560 6 H 0.051 0.949 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.172 1.172 12 H -0.212 1.212 13 N -0.305 5.305 14 C -0.048 4.048 15 C -0.081 4.081 16 C 0.035 3.965 17 O -0.386 6.386 18 C -0.155 4.155 19 C -0.188 4.188 20 C -0.021 4.021 21 O -0.309 6.309 22 C 0.003 3.997 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.093 0.907 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.238 0.762 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.063 -1.233 -15.118 17.178 hybrid contribution 1.049 -0.161 1.419 1.772 sum -7.014 -1.394 -13.700 15.454 Atomic orbital electron populations 1.21678 0.93764 1.01790 1.00934 1.21313 0.95424 0.94501 0.89930 0.96656 1.19705 0.94145 0.96583 0.94502 1.21316 0.92031 1.34027 1.08631 0.94916 1.25911 0.95475 0.96839 1.00552 1.70066 1.08419 1.46910 1.33474 0.85696 0.79354 0.78641 0.79143 1.19543 1.17209 1.21207 1.60621 1.33493 1.32262 1.04077 1.21743 0.99725 0.93165 0.90210 1.21129 0.95028 0.96852 0.95107 1.21799 0.81888 0.93964 0.98835 1.86362 1.16608 1.39214 1.96407 1.21621 0.94849 1.00304 0.98689 1.22199 1.03075 0.99192 0.94333 1.22764 0.83545 0.96321 0.99493 1.87903 1.31860 1.72647 1.38499 1.22465 1.00775 0.92409 0.84062 0.92549 0.92451 0.92599 0.95747 0.96132 0.92639 0.84103 0.90699 0.97500 0.93366 0.93833 0.76225 0.92494 0.92148 0.89642 0.90645 0.92926 0.86861 0.88365 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 9.41 71.98 0.68 -3.38 16 2 C 0.10 3.93 2.59 44.92 0.12 4.05 16 3 H 0.02 0.66 7.86 -2.39 -0.02 0.64 16 4 C -0.01 -0.55 3.64 29.85 0.11 -0.44 16 5 C -0.52 -29.27 8.67 25.60 0.22 -29.04 16 6 H 0.03 2.01 7.73 -2.91 -0.02 1.99 16 7 C 0.01 0.54 5.47 84.65 0.46 1.00 16 8 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 9 Si 0.95 44.15 27.47 68.60 1.88 46.04 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 N -0.67 -25.21 5.39 -491.54 -2.65 -27.86 16 14 C 0.08 2.67 4.17 86.30 0.36 3.03 16 15 C -0.08 -2.24 0.43 -52.09 -0.02 -2.26 16 16 C 0.11 2.96 5.20 71.98 0.37 3.33 16 17 O -0.58 -14.51 12.37 -148.98 -1.84 -16.36 16 18 C -0.12 -3.27 4.48 30.71 0.14 -3.13 16 19 C -0.15 -3.27 5.77 30.69 0.18 -3.09 16 20 C 0.06 1.12 6.84 72.01 0.49 1.61 16 21 O -0.39 -9.77 10.13 -148.98 -1.51 -11.28 16 22 C 0.08 2.05 5.45 72.01 0.39 2.45 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.05 1.69 7.38 -2.39 -0.02 1.68 16 26 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 27 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 28 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 29 H 0.34 14.42 5.71 -89.70 -0.51 13.91 16 30 H 0.07 2.44 6.91 -2.38 -0.02 2.42 16 31 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.05 1.17 6.23 -2.39 -0.01 1.16 16 33 H 0.04 1.26 7.63 -2.39 -0.02 1.24 16 34 H 0.39 6.50 9.12 -74.06 -0.68 5.83 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.92 6.95 -2.39 -0.02 1.91 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.59 6.71 -2.39 -0.02 1.57 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.10 2.53 7.73 -2.39 -0.02 2.51 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -64.65 320.39 -0.56 -65.21 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -0.24 Total: 28.34 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 3.50 Total: -25.87 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -2.35 Total: -86.08 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -3.35 Total: -27.63 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Total: -64.65 -0.56 -65.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700950453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.043 kcal (2) G-P(sol) polarization free energy of solvation -64.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds