Wall clock time and date at job start Mon Mar 30 2020 05:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.52997 * 109.47049 * 239.99881 * 2 1 3 5 5 C 1.50706 * 109.47238 * 174.99770 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 N 1.46896 * 109.47092 * 120.00193 * 2 1 3 14 14 C 1.46907 * 110.99769 * 274.99650 * 13 2 1 15 15 C 1.53002 * 109.46938 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.54234 * 59.82843 * 15 14 13 17 17 O 1.42899 * 109.47504 * 179.97438 * 16 15 14 18 18 C 1.53169 * 109.54650 * 299.55917 * 15 14 13 19 19 C 1.53093 * 109.16540 * 297.11301 * 18 15 14 20 20 O 1.42909 * 109.41238 * 302.39174 * 19 18 15 21 21 C 1.42903 * 114.09516 * 61.15614 * 20 19 18 22 22 C 1.53082 * 109.41755 * 298.83974 * 21 20 19 23 23 H 1.08998 * 109.47252 * 59.99923 * 1 2 3 24 24 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46959 * 299.99967 * 1 2 3 26 26 H 1.09001 * 109.46832 * 55.00084 * 4 2 1 27 27 H 1.09000 * 109.47611 * 295.00381 * 4 2 1 28 28 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 29 29 H 1.00906 * 111.00116 * 151.05116 * 13 2 1 30 30 H 1.08995 * 109.47236 * 300.00256 * 14 13 2 31 31 H 1.08999 * 109.47229 * 60.00389 * 14 13 2 32 32 H 1.08998 * 109.47457 * 299.99715 * 16 15 14 33 33 H 1.09008 * 109.47571 * 59.99440 * 16 15 14 34 34 H 0.96694 * 114.00278 * 179.97438 * 17 16 15 35 35 H 1.09003 * 109.52711 * 57.01966 * 18 15 14 36 36 H 1.09002 * 109.52412 * 177.20478 * 18 15 14 37 37 H 1.09003 * 109.48176 * 182.41007 * 19 18 15 38 38 H 1.08995 * 109.48863 * 62.37597 * 19 18 15 39 39 H 1.08999 * 109.47830 * 178.85607 * 21 20 19 40 40 H 1.09006 * 109.49012 * 58.83414 * 21 20 19 41 41 H 1.09004 * 109.52089 * 297.70707 * 22 21 20 42 42 H 1.09006 * 109.52583 * 177.51748 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2303 -1.1926 -2.3583 8 7 3.5762 -1.8361 -3.3005 9 14 6.0921 -1.0613 -2.4367 10 1 6.7000 -2.2146 -1.7255 11 1 6.5295 -1.0684 -3.8558 12 1 6.5268 0.2033 -1.7911 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5951 -0.5332 3.5744 16 6 3.9904 -1.0908 3.2864 17 8 4.4679 -1.7958 4.4340 18 6 1.6393 -1.6839 3.9037 19 6 0.2671 -1.1096 4.2657 20 8 0.4047 -0.2087 5.3665 21 6 1.2497 0.9127 5.1005 22 6 2.6612 0.4196 4.7720 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6053 -0.2617 -2.1369 27 1 1.7516 -1.7715 -1.2056 28 1 4.0607 -2.2429 -4.0360 29 1 2.9174 -1.1205 1.0287 30 1 2.7589 1.0462 2.1182 31 1 1.0871 0.6164 2.5526 32 1 3.9415 -1.7709 2.4361 33 1 4.6695 -0.2697 3.0562 34 1 5.3493 -2.1776 4.3225 35 1 1.5434 -2.3374 3.0365 36 1 2.0305 -2.2522 4.7476 37 1 -0.4053 -1.9217 4.5425 38 1 -0.1414 -0.5757 3.4079 39 1 1.2850 1.5575 5.9786 40 1 0.8541 1.4733 4.2535 41 1 3.0730 -0.1062 5.6335 42 1 3.2963 1.2707 4.5258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700952311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:16 Heat of formation + Delta-G solvation = -118.031166 kcal Electronic energy + Delta-G solvation = -20800.182478 eV Core-core repulsion = 17779.275244 eV Total energy + Delta-G solvation = -3020.907233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.02829 -37.04438 -36.29120 -34.10447 -32.51528 -30.99228 -29.86122 -27.51172 -27.09088 -24.64213 -23.46681 -22.90149 -22.41224 -19.48370 -18.26269 -17.32273 -16.40853 -16.13868 -15.88684 -15.09577 -15.04965 -14.73091 -14.44991 -14.20040 -13.90177 -13.36192 -12.93903 -12.85242 -12.25173 -12.06245 -11.86445 -11.67483 -11.45748 -11.31054 -11.17119 -11.06569 -10.81756 -10.63622 -10.62789 -10.46836 -10.21165 -9.93410 -9.71679 -9.25993 -9.21552 -9.11682 -8.45682 -7.70113 -6.08764 -4.12321 3.23056 3.30849 3.32177 4.01613 4.32392 4.36608 4.62419 4.80867 5.04324 5.06389 5.19372 5.29290 5.35014 5.41407 5.58290 5.65914 5.69161 5.78258 5.79497 5.90430 5.92834 5.96210 6.13427 6.15727 6.18802 6.26910 6.30453 6.47564 6.52034 6.58271 6.88890 6.90154 7.33815 7.46579 7.57468 7.71387 7.90846 8.00010 8.19573 8.31011 8.93846 9.51973 11.02038 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.006129 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.082395 B = 4567.273801 C = 5347.970599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.525 4.525 6 H 0.050 0.950 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.063 3.937 15 C -0.052 4.052 16 C 0.082 3.918 17 O -0.571 6.571 18 C -0.130 4.130 19 C 0.060 3.940 20 O -0.388 6.388 21 C 0.061 3.939 22 C -0.141 4.141 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.021 0.979 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.352 0.648 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.375 0.625 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 3.025 14.140 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.563 4.563 6 H 0.068 0.932 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.315 5.315 14 C -0.067 4.067 15 C -0.052 4.052 16 C 0.004 3.996 17 O -0.376 6.376 18 C -0.167 4.167 19 C -0.016 4.016 20 O -0.307 6.307 21 C -0.016 4.016 22 C -0.179 4.179 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.174 0.826 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.222 0.778 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.470 2.835 14.526 15.201 hybrid contribution 2.651 0.536 -1.021 2.891 sum -0.819 3.371 13.505 13.943 Atomic orbital electron populations 1.21789 0.96710 1.01334 0.99416 1.21611 0.93355 0.95844 0.91410 0.95388 1.19278 0.95352 0.96205 0.90851 1.21145 0.92238 1.34602 1.08323 0.93183 1.24983 0.98165 0.95208 0.95688 1.69960 1.35477 1.35470 1.11882 0.86666 0.86032 0.78335 0.77388 1.20614 1.21134 1.20054 1.60629 1.34593 1.31962 1.04296 1.22074 0.99953 0.93934 0.90710 1.20606 0.94074 0.95819 0.94730 1.22253 0.94331 0.95170 0.87868 1.86426 1.37652 1.74064 1.39476 1.22013 0.94493 0.97669 1.02547 1.22629 0.97036 0.92664 0.89274 1.87875 1.67933 1.36170 1.38753 1.22560 0.89822 0.88405 1.00833 1.22167 0.97528 0.99299 0.98920 0.93331 0.92583 0.94650 0.96045 0.95572 0.92893 0.82560 0.95753 0.91060 0.92256 0.94009 0.77828 0.89400 0.91261 0.89432 0.92616 0.89464 0.93256 0.90221 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.41 37.16 0.35 -1.99 16 2 C 0.09 1.74 2.59 -67.72 -0.18 1.57 16 3 H 0.03 0.58 7.80 -51.93 -0.40 0.18 16 4 C 0.02 0.51 4.57 -27.88 -0.13 0.38 16 5 C -0.52 -13.97 8.12 -34.44 -0.28 -14.25 16 6 H 0.05 1.29 7.49 -52.49 -0.39 0.90 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -12.24 5.50 -106.73 -0.59 -12.83 16 14 C 0.06 0.97 3.90 -3.82 -0.01 0.95 16 15 C -0.05 -0.72 0.43 -154.33 -0.07 -0.79 16 16 C 0.08 1.14 5.60 37.16 0.21 1.35 16 17 O -0.57 -7.37 12.21 -35.23 -0.43 -7.80 16 18 C -0.13 -1.83 4.70 -26.60 -0.13 -1.95 16 19 C 0.06 0.81 6.57 37.21 0.24 1.05 16 20 O -0.39 -5.48 10.77 -35.23 -0.38 -5.86 16 21 C 0.06 0.73 6.57 37.20 0.24 0.98 16 22 C -0.14 -1.78 4.81 -26.60 -0.13 -1.91 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.03 0.55 7.45 -51.93 -0.39 0.16 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.35 6.91 5.25 -39.29 -0.21 6.70 16 30 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.07 1.06 4.30 -51.93 -0.22 0.84 16 32 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 33 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.38 3.33 9.12 45.56 0.42 3.75 16 35 H 0.09 1.34 7.54 -51.93 -0.39 0.94 16 36 H 0.07 1.02 7.60 -51.93 -0.39 0.63 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.77 6.60 -51.93 -0.34 0.42 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.58 6.61 -51.93 -0.34 0.24 16 41 H 0.08 1.07 7.60 -51.93 -0.39 0.68 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -29.36 320.78 -7.16 -36.51 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.34 Total: 7.50 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 0.03 Total: -13.02 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.15 Total: -38.00 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.81 Total: -13.66 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.36 -7.16 -36.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700952311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.516 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds