Wall clock time and date at job start Mon Mar 30 2020 05:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47291 * 2 1 4 4 C 1.52999 * 109.46803 * 120.00103 * 2 1 3 5 5 C 1.50699 * 109.46983 * 185.00153 * 4 2 1 6 6 H 1.08002 * 120.00040 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99834 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00066 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46948 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46741 * 119.99910 * 9 7 5 12 12 H 1.48498 * 109.47243 * 240.00166 * 9 7 5 13 13 N 1.46902 * 109.47073 * 239.99742 * 2 1 3 14 14 C 1.46894 * 110.99947 * 85.00439 * 13 2 1 15 15 C 1.53002 * 109.47017 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.62026 * 59.77398 * 15 14 13 17 17 O 1.42897 * 109.46834 * 55.68723 * 16 15 14 18 18 C 1.53176 * 109.54220 * 180.02562 * 15 14 13 19 19 C 1.53097 * 109.16285 * 176.84425 * 18 15 14 20 20 O 1.42907 * 109.42393 * 302.38301 * 19 18 15 21 21 C 1.42924 * 114.08419 * 61.14941 * 20 19 18 22 22 C 1.53091 * 109.42189 * 298.85435 * 21 20 19 23 23 H 1.09003 * 109.46654 * 60.00443 * 1 2 3 24 24 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46965 * 300.00585 * 1 2 3 26 26 H 1.09007 * 109.47098 * 304.99866 * 4 2 1 27 27 H 1.08998 * 109.47796 * 64.99656 * 4 2 1 28 28 H 0.96995 * 119.99618 * 180.02562 * 8 7 5 29 29 H 1.00897 * 110.99806 * 321.04827 * 13 2 1 30 30 H 1.08998 * 109.47476 * 59.99985 * 14 13 2 31 31 H 1.08999 * 109.47061 * 299.99400 * 14 13 2 32 32 H 1.08995 * 109.47316 * 175.69055 * 16 15 14 33 33 H 1.09005 * 109.47149 * 295.69246 * 16 15 14 34 34 H 0.96703 * 113.99886 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.52766 * 56.93621 * 18 15 14 36 36 H 1.09007 * 109.57325 * 296.77517 * 18 15 14 37 37 H 1.09002 * 109.48016 * 62.36988 * 19 18 15 38 38 H 1.08996 * 109.47968 * 182.39268 * 19 18 15 39 39 H 1.09002 * 109.47494 * 178.86730 * 21 20 19 40 40 H 1.09001 * 109.48673 * 58.84167 * 21 20 19 41 41 H 1.09000 * 109.52216 * 297.70260 * 22 21 20 42 42 H 1.09000 * 109.52340 * 177.51877 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5393 7 6 4.2303 -1.1927 2.3585 8 7 3.5762 -1.8361 3.3006 9 14 6.0920 -1.0615 2.4369 10 1 6.5837 -0.2920 1.2658 11 1 6.4869 -0.3649 3.6875 12 1 6.6854 -2.4227 2.4198 13 7 2.0197 -0.6926 -1.1994 14 6 2.0826 0.2225 -2.3468 15 6 2.5952 -0.5334 -3.5744 16 6 1.6505 -1.6935 -3.8949 17 8 0.3227 -1.1934 -4.0648 18 6 2.6620 0.4195 -4.7718 19 6 3.2496 -0.3245 -5.9739 20 8 4.5413 -0.8324 -5.6334 21 6 4.5343 -1.7650 -4.5504 22 6 3.9982 -1.0790 -3.2912 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6053 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2057 28 1 4.0605 -2.2422 4.0364 29 1 1.4496 -1.4979 -1.4100 30 1 2.7590 1.0460 -2.1182 31 1 1.0872 0.6162 -2.5526 32 1 1.9748 -2.1830 -4.8131 33 1 1.6661 -2.4117 -3.0751 34 1 -0.3311 -1.8756 -4.2703 35 1 3.2961 1.2710 -4.5249 36 1 1.6592 0.7706 -5.0155 37 1 2.5938 -1.1516 -6.2456 38 1 3.3391 0.3605 -6.8170 39 1 5.5494 -2.1178 -4.3681 40 1 3.8954 -2.6112 -4.8033 41 1 4.6593 -0.2578 -3.0144 42 1 3.9507 -1.8004 -2.4755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700952312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:18 Heat of formation + Delta-G solvation = -136.647661 kcal Electronic energy + Delta-G solvation = -20729.413358 eV Core-core repulsion = 17707.698853 eV Total energy + Delta-G solvation = -3021.714505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13589 -38.45942 -37.36216 -35.43905 -34.42592 -32.05021 -31.45441 -29.11592 -27.59128 -26.64297 -25.02279 -24.44049 -23.01658 -21.40921 -19.57193 -18.41312 -18.27059 -17.24139 -16.93684 -16.51795 -16.30455 -16.08352 -15.78798 -15.49620 -15.08046 -14.65527 -14.24082 -14.00863 -13.63046 -13.42609 -13.27213 -13.23397 -13.18583 -12.91702 -12.73140 -12.49246 -12.33533 -12.21224 -11.90681 -11.68906 -11.47085 -11.22934 -11.06524 -10.99057 -10.82642 -10.48277 -10.24288 -8.94091 -8.08687 -6.12907 1.40627 1.41696 1.54637 2.47783 3.00040 3.21126 3.27955 3.52155 3.72664 3.82177 4.03431 4.14024 4.23459 4.28695 4.32338 4.36526 4.47362 4.55244 4.62382 4.66382 4.76868 4.79920 4.86388 4.86853 4.95298 5.03256 5.06026 5.21194 5.24217 5.31955 5.39672 5.43471 5.53303 5.69894 5.91577 6.29744 6.35414 6.50836 6.75904 6.93250 7.01166 7.52500 9.03740 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.006400 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.767221 B = 4374.193297 C = 5392.324268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 H 0.052 0.948 4 C 0.040 3.960 5 C -0.493 4.493 6 H 0.055 0.945 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.955 3.045 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.083 3.917 15 C -0.050 4.050 16 C 0.085 3.915 17 O -0.580 6.580 18 C -0.137 4.137 19 C 0.061 3.939 20 O -0.402 6.402 21 C 0.060 3.940 22 C -0.133 4.133 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.053 0.947 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.258 0.742 29 H 0.334 0.666 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.394 0.606 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 0.399 -19.317 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 H 0.070 0.930 4 C 0.002 3.998 5 C -0.531 4.531 6 H 0.073 0.927 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.208 1.208 13 N -0.301 5.301 14 C -0.046 4.046 15 C -0.050 4.050 16 C 0.008 3.992 17 O -0.388 6.388 18 C -0.175 4.175 19 C -0.015 4.015 20 O -0.321 6.321 21 C -0.017 4.017 22 C -0.171 4.171 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.243 0.757 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.375 1.018 -18.977 19.301 hybrid contribution -0.521 -0.506 0.667 0.986 sum -3.896 0.512 -18.310 18.727 Atomic orbital electron populations 1.22365 0.96950 1.01588 1.01516 1.21436 0.91916 0.96663 0.91115 0.92986 1.18981 0.95161 0.94140 0.91502 1.21478 0.93281 1.32007 1.06357 0.92694 1.25841 1.02738 0.95788 0.95816 1.70099 1.36929 1.38265 1.13067 0.85548 0.80853 0.77690 0.77815 1.19096 1.20950 1.20755 1.60448 1.57625 1.09267 1.02754 1.21785 0.98490 0.94688 0.89653 1.20564 0.94316 0.95598 0.94567 1.22226 0.82569 0.94713 0.99723 1.86432 1.18357 1.39778 1.94227 1.22110 1.02133 0.98257 0.94972 1.22709 0.84171 0.97994 0.96666 1.87901 1.30230 1.61882 1.52110 1.22721 1.02532 0.90984 0.85444 1.22032 0.95107 1.01373 0.98589 0.92188 0.92890 0.92754 0.99235 0.99010 0.93326 0.84753 0.93435 0.94987 0.92090 0.93575 0.75682 0.92101 0.89888 0.92016 0.87548 0.88374 0.91782 0.92680 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.62 9.16 71.98 0.66 -4.96 16 2 C 0.10 4.07 2.53 44.92 0.11 4.18 16 3 H 0.05 2.24 7.80 -2.39 -0.02 2.22 16 4 C 0.04 2.09 4.65 29.85 0.14 2.23 16 5 C -0.49 -28.28 8.84 25.60 0.23 -28.06 16 6 H 0.05 3.14 7.74 -2.91 -0.02 3.11 16 7 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 8 N -0.94 -58.30 13.29 21.45 0.28 -58.01 16 9 Si 0.95 45.96 29.54 68.60 2.03 47.99 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 N -0.67 -24.55 5.27 -491.57 -2.59 -27.14 16 14 C 0.08 2.60 4.26 86.31 0.37 2.97 16 15 C -0.05 -1.28 0.43 -52.06 -0.02 -1.30 16 16 C 0.09 1.81 4.90 71.98 0.35 2.16 16 17 O -0.58 -11.49 12.30 -148.98 -1.83 -13.32 16 18 C -0.14 -3.06 4.84 30.69 0.15 -2.91 16 19 C 0.06 1.19 6.57 72.01 0.47 1.66 16 20 O -0.40 -9.86 10.77 -148.98 -1.60 -11.46 16 21 C 0.06 1.37 6.57 72.01 0.47 1.84 16 22 C -0.13 -3.72 4.72 30.68 0.14 -3.58 16 23 H 0.06 1.80 7.45 -2.39 -0.02 1.78 16 24 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.33 11.47 6.61 -89.70 -0.59 10.88 16 30 H 0.05 1.64 8.06 -2.39 -0.02 1.62 16 31 H 0.03 0.99 6.88 -2.39 -0.02 0.98 16 32 H 0.06 1.08 5.02 -2.39 -0.01 1.07 16 33 H 0.05 1.06 6.81 -2.38 -0.02 1.05 16 34 H 0.39 4.35 9.12 -74.06 -0.68 3.67 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.78 7.75 -2.38 -0.02 1.76 16 37 H 0.06 1.05 6.51 -2.39 -0.02 1.03 16 38 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 1.25 6.70 -2.39 -0.02 1.23 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.08 2.42 7.73 -2.39 -0.02 2.40 16 Total: -1.00 -67.55 323.03 -0.44 -67.99 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.26 Total: 19.61 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 3.54 Total: -25.65 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.30 Total: -85.15 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -3.44 Total: -24.78 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -67.55 -0.44 -67.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700952312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.656 kcal (2) G-P(sol) polarization free energy of solvation -67.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds