Wall clock time and date at job start Mon Mar 30 2020 04:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47351 * 2 1 4 4 N 1.46503 * 109.47176 * 119.99970 * 2 1 3 5 5 C 1.36931 * 119.99824 * 299.51464 * 4 2 1 6 6 H 1.07995 * 120.00455 * 37.12111 * 5 4 2 7 7 C 1.38817 * 119.99562 * 217.11744 * 5 4 2 8 8 N 1.31620 * 120.00273 * 21.27368 * 7 5 4 9 9 Si 1.86798 * 119.99873 * 201.26860 * 7 5 4 10 10 H 1.48496 * 109.47155 * 60.00102 * 9 7 5 11 11 H 1.48501 * 109.47283 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47301 * 300.00153 * 9 7 5 13 13 C 1.46503 * 119.99983 * 119.51278 * 4 2 1 14 14 C 1.53004 * 109.47159 * 270.00085 * 13 4 2 15 15 O 1.42903 * 109.47011 * 64.99720 * 14 13 4 16 16 C 1.42898 * 113.99882 * 179.97438 * 15 14 13 17 17 C 1.53171 * 109.54797 * 269.55871 * 16 15 14 18 18 C 1.53091 * 109.16617 * 183.15090 * 17 16 15 19 19 O 1.42906 * 109.41062 * 57.60964 * 18 17 16 20 20 C 1.42898 * 114.09897 * 298.83835 * 19 18 17 21 21 C 1.53100 * 109.41409 * 61.16386 * 20 19 18 22 22 H 1.09004 * 109.46970 * 305.49698 * 1 2 3 23 23 H 1.08998 * 109.46916 * 65.49464 * 1 2 3 24 24 H 1.08997 * 109.47048 * 185.49342 * 1 2 3 25 25 H 1.09004 * 109.47003 * 240.00272 * 2 1 3 26 26 H 1.08998 * 109.47615 * 181.39617 * 3 2 1 27 27 H 1.09005 * 109.46893 * 301.39318 * 3 2 1 28 28 H 1.09001 * 109.47123 * 61.39301 * 3 2 1 29 29 H 0.96999 * 120.00342 * 179.97438 * 8 7 5 30 30 H 1.08990 * 109.47078 * 149.99636 * 13 4 2 31 31 H 1.09007 * 109.47087 * 30.00067 * 13 4 2 32 32 H 1.09002 * 109.46750 * 305.00361 * 14 13 4 33 33 H 1.08993 * 109.47092 * 184.99487 * 14 13 4 34 34 H 1.08995 * 109.61490 * 29.78440 * 16 15 14 35 35 H 1.09005 * 109.52301 * 303.06131 * 17 16 15 36 36 H 1.09004 * 109.52087 * 63.24713 * 17 16 15 37 37 H 1.08997 * 109.48013 * 297.62965 * 18 17 16 38 38 H 1.08997 * 109.48182 * 177.59385 * 18 17 16 39 39 H 1.09002 * 109.48587 * 301.18033 * 20 19 18 40 40 H 1.08995 * 109.49334 * 181.14543 * 20 19 18 41 41 H 1.08996 * 109.52016 * 182.48729 * 21 20 19 42 42 H 1.08998 * 109.51987 * 62.29248 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6958 -0.2170 2.4398 6 1 0.7170 0.2020 2.6210 7 6 2.6269 -0.2754 3.4677 8 7 3.9091 -0.3790 3.1892 9 14 2.0601 -0.2070 5.2463 10 1 1.1510 -1.3487 5.5204 11 1 3.2396 -0.2859 6.1452 12 1 1.3391 1.0687 5.4874 13 6 2.8518 -1.8880 1.0618 14 6 1.9584 -3.1294 1.0221 15 8 1.1502 -3.0971 -0.1560 16 6 0.2744 -4.2182 -0.2909 17 6 0.9816 -5.3300 -1.0717 18 6 0.0100 -6.4947 -1.2793 19 8 -1.1524 -6.0269 -1.9664 20 6 -1.8809 -5.0196 -1.2617 21 6 -0.9852 -3.7956 -1.0533 22 1 -0.3633 0.5968 0.8367 23 1 -0.3633 0.4262 -0.9351 24 1 -0.3633 -1.0229 0.0984 25 1 1.8933 -0.5138 -0.8900 26 1 3.1297 1.4426 -0.0250 27 1 1.6564 1.9634 -0.8773 28 1 1.6973 1.9490 0.9022 29 1 4.5598 -0.4194 3.9074 30 1 3.5303 -1.9556 1.9121 31 1 3.4299 -1.8266 0.1397 32 1 1.3164 -3.1433 1.9029 33 1 2.5803 -4.0244 1.0115 34 1 -0.0036 -4.5863 0.6967 35 1 1.3034 -4.9470 -2.0402 36 1 1.8491 -5.6752 -0.5091 37 1 -0.2798 -6.9033 -0.3113 38 1 0.4944 -7.2711 -1.8714 39 1 -2.1954 -5.4089 -0.2933 40 1 -2.7587 -4.7332 -1.8408 41 1 -1.5244 -3.0435 -0.4775 42 1 -0.7032 -3.3816 -2.0214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701399408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:10 Heat of formation + Delta-G solvation = -102.803693 kcal Electronic energy + Delta-G solvation = -20747.828147 eV Core-core repulsion = 17727.581227 eV Total energy + Delta-G solvation = -3020.246920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51479 -38.80741 -37.59760 -34.30559 -33.62079 -32.08526 -31.88535 -29.16306 -27.70824 -26.08557 -25.13670 -24.54104 -22.81012 -21.36645 -21.18073 -18.28375 -17.85340 -17.01878 -16.85135 -16.77969 -16.39635 -15.80745 -15.68150 -15.37612 -15.03852 -14.57409 -14.29078 -14.03663 -13.80158 -13.28829 -13.16995 -13.11398 -12.90364 -12.63037 -12.57539 -12.38489 -12.29003 -12.20382 -11.95986 -11.88753 -11.66397 -11.47936 -11.29604 -11.15896 -10.64667 -10.47670 -10.24888 -8.46406 -7.76277 -5.35524 1.46523 1.48405 1.54713 2.53938 2.80265 2.99598 3.28836 3.67215 3.81968 3.86361 4.01872 4.12776 4.27813 4.41252 4.42554 4.47798 4.54567 4.61562 4.65262 4.71055 4.75800 4.80041 4.86867 4.88902 4.97543 5.06029 5.15457 5.16898 5.21320 5.24261 5.28271 5.32059 5.63246 5.65454 5.73225 5.85367 6.21740 6.51019 6.54451 7.24374 7.95735 8.51002 9.20180 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.005849 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.683014 B = 4786.376692 C = 5196.040770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 C -0.139 4.139 4 N -0.586 5.586 5 C -0.244 4.244 6 H 0.052 0.948 7 C -0.040 4.040 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.279 1.279 13 C 0.150 3.850 14 C 0.063 3.937 15 O -0.380 6.380 16 C 0.078 3.922 17 C -0.172 4.172 18 C 0.065 3.935 19 O -0.399 6.399 20 C 0.067 3.933 21 C -0.146 4.146 22 H 0.032 0.968 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.250 0.750 30 H 0.080 0.920 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 -9.946 -8.016 15.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 C -0.198 4.198 4 N -0.307 5.307 5 C -0.375 4.375 6 H 0.070 0.930 7 C -0.236 4.236 8 N -0.566 5.566 9 Si 0.779 3.221 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.205 1.205 13 C 0.024 3.976 14 C -0.016 4.016 15 O -0.299 6.299 16 C 0.020 3.980 17 C -0.210 4.210 18 C -0.011 4.011 19 O -0.318 6.318 20 C -0.010 4.010 21 C -0.184 4.184 22 H 0.052 0.948 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.133 0.867 41 H 0.094 0.906 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.459 -9.850 -8.236 15.376 hybrid contribution 0.358 0.196 1.692 1.741 sum -8.101 -9.654 -6.544 14.201 Atomic orbital electron populations 1.21942 0.96855 1.00720 0.99837 1.20461 0.93455 0.91281 0.88810 1.22015 0.99246 0.98450 1.00086 1.43945 1.59273 1.26244 1.01245 1.19044 0.95214 1.35848 0.87363 0.93041 1.25743 0.94768 1.01444 1.01641 1.70084 1.00455 1.54252 1.31805 0.85619 0.76900 0.78170 0.81442 1.20753 1.22026 1.20495 1.20915 0.92308 0.84596 0.99800 1.23128 0.93289 0.98905 0.86272 1.87975 1.54684 1.44078 1.43160 1.22196 0.90704 0.87259 0.97824 1.22670 0.99857 0.96906 1.01543 1.22651 0.85224 0.95202 0.98029 1.87891 1.39909 1.56692 1.47306 1.22671 0.94126 0.86354 0.97813 1.22239 0.95469 0.99518 1.01167 0.94835 0.92209 0.93371 0.93246 0.95650 0.91873 0.94593 0.94085 0.90243 0.95555 0.95522 0.93793 0.92926 0.91357 0.90605 0.92155 0.86978 0.92138 0.86681 0.90614 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.06 71.98 0.65 -4.45 16 2 C 0.17 7.14 2.96 44.99 0.13 7.27 16 3 C -0.14 -5.81 9.18 71.98 0.66 -5.15 16 4 N -0.59 -28.89 2.33 -678.02 -1.58 -30.48 16 5 C -0.24 -13.10 8.17 84.04 0.69 -12.41 16 6 H 0.05 2.80 7.01 -2.91 -0.02 2.78 16 7 C -0.04 -2.16 4.96 84.86 0.42 -1.74 16 8 N -0.92 -53.03 11.43 21.65 0.25 -52.78 16 9 Si 0.95 44.26 29.60 68.60 2.03 46.29 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 C 0.15 7.11 5.67 86.38 0.49 7.60 16 14 C 0.06 2.50 6.10 71.98 0.44 2.94 16 15 O -0.38 -13.92 8.97 -148.98 -1.34 -15.26 16 16 C 0.08 2.25 2.70 30.71 0.08 2.33 16 17 C -0.17 -4.18 5.76 30.68 0.18 -4.00 16 18 C 0.07 1.30 6.84 72.01 0.49 1.79 16 19 O -0.40 -9.17 10.77 -148.98 -1.60 -10.77 16 20 C 0.07 1.35 6.84 72.02 0.49 1.84 16 21 C -0.15 -3.67 5.79 30.69 0.18 -3.50 16 22 H 0.03 1.32 7.25 -2.38 -0.02 1.31 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 1.86 7.55 -2.39 -0.02 1.84 16 25 H 0.05 2.10 7.79 -2.38 -0.02 2.08 16 26 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.03 1.61 7.60 -2.39 -0.02 1.59 16 29 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.08 4.24 5.48 -2.39 -0.01 4.23 16 31 H 0.03 1.22 7.92 -2.38 -0.02 1.20 16 32 H 0.03 1.14 8.09 -2.39 -0.02 1.13 16 33 H 0.04 1.56 7.99 -2.39 -0.02 1.54 16 34 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 35 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.08 1.78 7.99 -2.39 -0.02 1.76 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -60.69 330.64 3.62 -57.07 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.96 Total: 13.39 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 4.91 Total: -7.47 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -1.33 Total: -83.26 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -2.94 Total: -26.03 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -60.69 3.62 -57.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701399408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.734 kcal (2) G-P(sol) polarization free energy of solvation -60.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds