Wall clock time and date at job start Mon Mar 30 2020 04:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47102 * 2 1 4 4 O 1.42902 * 109.47450 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99989 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.90457 * 32.41229 * 5 4 3 7 7 C 1.55140 * 110.99046 * 268.54650 * 5 4 3 8 8 C 1.54323 * 103.01908 * 206.25656 * 7 5 4 9 9 N 1.47442 * 107.23206 * 22.28288 * 8 7 5 10 10 C 1.46901 * 110.99966 * 123.25582 * 9 8 7 11 11 C 1.53007 * 109.46560 * 69.87459 * 10 9 8 12 12 O 1.42902 * 109.47311 * 65.00107 * 11 10 9 13 13 C 1.42895 * 114.00370 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47139 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99572 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.47851 * 108.56552 * 0.99040 * 9 8 7 23 23 H 1.08998 * 109.47304 * 299.99631 * 1 2 3 24 24 H 1.08999 * 109.47348 * 60.00301 * 1 2 3 25 25 H 1.09003 * 109.46920 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47603 * 239.99931 * 2 1 3 27 27 H 1.08999 * 109.47348 * 119.99699 * 2 1 3 28 28 H 1.08996 * 109.46948 * 59.99529 * 3 2 1 29 29 H 1.08999 * 109.46774 * 300.00051 * 3 2 1 30 30 H 1.08996 * 110.70624 * 87.87501 * 7 5 4 31 31 H 1.08999 * 110.70733 * 324.63694 * 7 5 4 32 32 H 1.08999 * 109.88449 * 262.88170 * 8 7 5 33 33 H 1.08994 * 109.88503 * 141.68784 * 8 7 5 34 34 H 1.08992 * 109.47033 * 309.87793 * 10 9 8 35 35 H 1.08998 * 109.47104 * 189.86993 * 10 9 8 36 36 H 1.09000 * 109.47177 * 304.99703 * 11 10 9 37 37 H 1.09001 * 109.46772 * 184.99759 * 11 10 9 38 38 H 1.09002 * 109.46880 * 59.99856 * 13 12 11 39 39 H 1.08998 * 109.47064 * 300.00681 * 13 12 11 40 40 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 41 41 H 1.09000 * 110.37070 * 94.73467 * 22 9 8 42 42 H 1.09000 * 110.37135 * 217.07410 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0012 6 1 3.4232 3.4532 0.5446 7 6 4.3091 3.2404 -1.4495 8 6 5.4756 4.2356 -1.2750 9 7 6.1599 3.8901 -0.0155 10 6 7.5844 3.6168 -0.2481 11 6 8.3012 4.9196 -0.6087 12 8 8.2645 5.8088 0.5094 13 6 8.9105 7.0620 0.2769 14 6 8.8111 7.9156 1.5148 15 1 8.3054 7.5388 2.3915 16 6 9.3656 9.1779 1.5280 17 7 9.9809 9.6371 0.4602 18 14 9.2430 10.2359 3.0626 19 1 9.9042 9.5416 4.1967 20 1 7.8134 10.4687 3.3904 21 1 9.9143 11.5383 2.8209 22 6 5.4856 2.7167 0.5799 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.4289 3.7446 -1.8483 31 1 4.6034 2.4105 -2.0919 32 1 5.0895 5.2535 -1.2201 33 1 6.1691 4.1442 -2.1109 34 1 7.6888 2.9058 -1.0676 35 1 8.0261 3.1972 0.6557 36 1 7.8033 5.3848 -1.4595 37 1 9.3379 4.7042 -0.8676 38 1 8.4256 7.5718 -0.5556 39 1 9.9598 6.8907 0.0365 40 1 10.0450 9.0875 -0.3366 41 1 5.9937 1.7979 0.2869 42 1 5.4574 2.8059 1.6659 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701719872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:23 Heat of formation + Delta-G solvation = -126.766234 kcal Electronic energy + Delta-G solvation = -19156.518670 eV Core-core repulsion = 16135.232655 eV Total energy + Delta-G solvation = -3021.286014 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58149 -38.91905 -37.96457 -35.29102 -34.61159 -32.81457 -30.18244 -29.25414 -28.00118 -26.67087 -24.72898 -23.92054 -22.59622 -22.00219 -21.42499 -19.19045 -18.19871 -17.68258 -17.16531 -16.72358 -16.58849 -15.99526 -15.70602 -15.46565 -15.08441 -14.82897 -14.52252 -14.19858 -14.17139 -13.69611 -13.58305 -13.24216 -13.09127 -12.86470 -12.72267 -12.55570 -12.47386 -12.13820 -11.98334 -11.89465 -11.79881 -11.71870 -11.57583 -10.84703 -10.83624 -10.54129 -10.31691 -9.30067 -8.83161 -6.53390 1.52876 1.62193 1.83504 2.38205 2.50361 3.00184 3.03752 3.15238 3.57637 3.58284 3.96002 4.01807 4.09012 4.11462 4.15653 4.17716 4.35447 4.39688 4.44538 4.48599 4.53358 4.58240 4.61645 4.65756 4.74084 4.79539 4.82549 4.87395 4.92654 4.96061 5.09607 5.13663 5.22131 5.35301 5.69542 5.90318 5.93314 6.02796 6.23895 6.34322 6.71751 7.27437 8.57942 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.034139 B = 0.003171 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.984253 B = 8828.132782 C = 9264.996928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.055 3.945 4 O -0.391 6.391 5 C 0.084 3.916 6 H 0.078 0.922 7 C -0.151 4.151 8 C 0.041 3.959 9 N -0.541 5.541 10 C 0.066 3.934 11 C 0.057 3.943 12 O -0.389 6.389 13 C 0.196 3.804 14 C -0.621 4.621 15 H 0.052 0.948 16 C -0.030 4.030 17 N -0.929 5.929 18 Si 1.129 2.871 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.275 1.275 22 C 0.051 3.949 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.050 0.950 38 H -0.021 1.021 39 H -0.019 1.019 40 H 0.255 0.745 41 H 0.060 0.940 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.715 -18.771 -3.673 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.021 4.021 4 O -0.310 6.310 5 C 0.026 3.974 6 H 0.096 0.904 7 C -0.190 4.190 8 C -0.087 4.087 9 N -0.267 5.267 10 C -0.062 4.062 11 C -0.021 4.021 12 O -0.308 6.308 13 C 0.121 3.879 14 C -0.659 4.659 15 H 0.070 0.930 16 C -0.228 4.228 17 N -0.565 5.565 18 Si 0.947 3.053 19 H -0.192 1.192 20 H -0.193 1.193 21 H -0.200 1.200 22 C -0.077 4.077 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.068 0.932 38 H -0.004 1.004 39 H -0.002 1.002 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.312 -17.129 -2.546 23.790 hybrid contribution -0.012 -1.745 -1.832 2.530 sum -16.324 -18.874 -4.378 25.335 Atomic orbital electron populations 1.21687 0.93413 1.02916 1.02445 1.21466 0.96797 0.94682 1.02944 1.22781 0.79727 0.98814 1.00799 1.87840 1.21084 1.27098 1.95024 1.23122 0.94097 0.84619 0.95590 0.90360 1.23193 0.99061 0.99207 0.97523 1.22797 0.95684 0.99431 0.90753 1.63445 1.02371 1.35505 1.25381 1.22228 0.87899 0.94255 1.01811 1.22644 0.98715 0.91256 0.89443 1.87927 1.78295 1.27016 1.37606 1.19930 0.89825 0.81954 0.96208 1.22258 1.40641 1.02788 1.00169 0.92998 1.27638 0.91819 0.97554 1.05751 1.70928 1.41728 1.40017 1.03844 0.82820 0.77778 0.74278 0.70407 1.19175 1.19263 1.20001 1.22923 0.92858 0.91933 0.99981 0.92204 0.92077 0.91186 0.91467 0.91593 0.92840 0.92608 0.89261 0.90101 0.91690 0.91859 0.90731 0.90258 0.94281 0.93169 1.00389 1.00158 0.93598 0.92138 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.65 6.30 30.59 0.19 -1.45 16 3 C 0.06 0.90 5.82 71.98 0.42 1.32 16 4 O -0.39 -8.53 10.15 -148.98 -1.51 -10.04 16 5 C 0.08 1.90 3.48 31.98 0.11 2.01 16 6 H 0.08 1.75 7.90 -2.39 -0.02 1.73 16 7 C -0.15 -3.15 6.68 31.78 0.21 -2.93 16 8 C 0.04 1.09 6.13 86.65 0.53 1.62 16 9 N -0.54 -16.77 5.11 -885.54 -4.52 -21.29 16 10 C 0.07 2.01 4.92 86.31 0.42 2.44 16 11 C 0.06 2.17 6.04 71.98 0.44 2.60 16 12 O -0.39 -19.98 10.27 -148.98 -1.53 -21.51 16 13 C 0.20 11.36 5.00 71.23 0.36 11.71 16 14 C -0.62 -38.63 9.43 25.60 0.24 -38.39 16 15 H 0.05 3.24 7.81 -2.91 -0.02 3.22 16 16 C -0.03 -1.83 5.46 84.66 0.46 -1.37 16 17 N -0.93 -58.56 13.65 21.45 0.29 -58.26 16 18 Si 1.13 51.52 29.90 68.60 2.05 53.57 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 C 0.05 1.31 6.42 86.77 0.56 1.87 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.83 8.11 -2.39 -0.02 0.81 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.58 6.94 -2.39 -0.02 1.56 16 34 H 0.07 1.81 7.96 -2.39 -0.02 1.79 16 35 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 36 H 0.04 1.46 7.05 -2.39 -0.02 1.44 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H -0.02 -1.28 8.01 -2.39 -0.02 -1.30 16 39 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 40 H 0.25 16.22 7.22 -92.70 -0.67 15.55 16 41 H 0.06 1.47 7.81 -2.39 -0.02 1.45 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.35 340.47 0.48 -70.86 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 1.05 Total: 7.99 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.66 Total: -21.32 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -4.23 Total: -79.55 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -3.04 Total: -31.55 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.57 kcal Total: -71.35 0.48 -70.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701719872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.904 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds