Wall clock time and date at job start Mon Mar 30 2020 04:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53098 * 109.47924 * 239.97571 * 2 1 3 5 5 C 1.53178 * 109.16479 * 297.61645 * 4 2 1 6 6 N 1.46892 * 109.54069 * 183.14939 * 5 4 2 7 7 C 1.46905 * 110.99798 * 204.99688 * 6 5 4 8 8 C 1.53006 * 109.46751 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47221 * 65.00716 * 8 7 6 10 10 C 1.42897 * 113.99891 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46719 * 179.97438 * 10 9 8 12 12 H 1.07990 * 120.00521 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99471 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00287 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99650 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47319 * 89.99979 * 15 13 11 17 17 H 1.48503 * 109.46785 * 210.00030 * 15 13 11 18 18 H 1.48498 * 109.47023 * 330.00072 * 15 13 11 19 19 C 1.53176 * 109.03581 * 303.01809 * 5 4 2 20 20 C 1.53102 * 109.16158 * 56.98146 * 19 5 4 21 21 H 1.08995 * 109.48102 * 62.37682 * 20 19 5 22 22 C 1.53001 * 109.47728 * 182.39901 * 20 19 5 23 23 O 1.42901 * 109.48873 * 120.02844 * 2 1 3 24 24 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 26 26 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 27 27 H 1.09002 * 109.51720 * 57.52404 * 4 2 1 28 28 H 1.08994 * 109.52068 * 177.70838 * 4 2 1 29 29 H 1.09003 * 109.54167 * 62.88238 * 5 4 2 30 30 H 1.00900 * 111.00083 * 81.04795 * 6 5 4 31 31 H 1.08991 * 109.47314 * 300.00324 * 7 6 5 32 32 H 1.08997 * 109.46678 * 60.00715 * 7 6 5 33 33 H 1.09002 * 109.46427 * 185.00015 * 8 7 6 34 34 H 1.08996 * 109.47282 * 304.99627 * 8 7 6 35 35 H 1.08998 * 109.47150 * 299.99401 * 10 9 8 36 36 H 1.08997 * 109.47552 * 59.99819 * 10 9 8 37 37 H 0.97006 * 120.00129 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.51926 * 176.88386 * 19 5 4 39 39 H 1.08997 * 109.52219 * 297.07986 * 19 5 4 40 40 H 1.08993 * 109.47586 * 59.99552 * 22 20 19 41 41 H 1.08997 * 109.47021 * 180.02562 * 22 20 19 42 42 H 1.09006 * 109.46962 * 299.99628 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2497 5 6 1.5760 -2.1813 -1.2123 6 7 2.1241 -2.9013 -2.3694 7 6 1.2871 -4.0582 -2.7144 8 6 1.8890 -4.7815 -3.9209 9 8 3.1600 -5.3279 -3.5633 10 6 3.8109 -6.0286 -4.6250 11 6 5.1352 -6.5589 -4.1391 12 1 5.4483 -6.3792 -3.1213 13 6 5.9467 -7.2745 -4.9938 14 7 5.5648 -7.4947 -6.2328 15 14 7.5880 -7.9324 -4.3914 16 1 7.3994 -9.2941 -3.8297 17 1 8.5436 -7.9932 -5.5265 18 1 8.1256 -7.0331 -3.3392 19 6 2.0769 -2.8322 0.0807 20 6 1.5650 -2.0285 1.2790 21 1 0.4755 -2.0552 1.2958 22 6 2.1104 -2.6375 2.5722 23 8 2.0068 -0.6741 1.1663 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6419 -0.2356 -2.1399 28 1 3.1297 -0.6872 -1.2711 29 1 0.4869 -2.2180 -1.2408 30 1 3.0784 -3.1828 -2.2012 31 1 1.2438 -4.7412 -1.8661 32 1 0.2807 -3.7184 -2.9590 33 1 1.2223 -5.5858 -4.2319 34 1 2.0148 -4.0758 -4.7420 35 1 3.1840 -6.8589 -4.9503 36 1 3.9767 -5.3492 -5.4610 37 1 6.1359 -7.9978 -6.8343 38 1 1.7042 -3.8546 0.1418 39 1 3.1669 -2.8397 0.0861 40 1 3.1999 -2.6104 2.5554 41 1 1.7455 -2.0655 3.4253 42 1 1.7739 -3.6708 2.6574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702148460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:27 Heat of formation + Delta-G solvation = -113.273711 kcal Electronic energy + Delta-G solvation = -19719.929611 eV Core-core repulsion = 16699.228677 eV Total energy + Delta-G solvation = -3020.700934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12858 -37.21702 -35.68924 -33.51764 -32.83411 -31.96700 -29.63025 -27.63944 -26.75257 -26.34415 -22.96591 -22.37315 -21.84554 -21.32750 -19.46893 -16.62723 -16.36481 -16.25266 -15.82843 -15.60326 -14.94988 -14.62351 -14.36268 -14.27427 -14.02974 -13.36039 -13.06206 -12.87437 -12.79527 -12.30732 -12.18133 -12.06884 -11.81014 -11.72514 -11.35612 -11.27030 -11.05254 -11.04477 -10.82804 -10.76771 -10.56021 -10.14622 -9.97945 -9.58288 -9.11454 -8.83091 -8.18438 -8.17387 -6.11369 -4.13249 3.29813 3.34902 3.40185 3.61703 4.24109 4.34467 4.60881 4.61351 4.77713 4.91829 4.95903 5.01558 5.14349 5.18214 5.25165 5.26827 5.37843 5.40286 5.47718 5.57650 5.66574 5.69896 5.73965 5.84672 5.88509 5.96151 6.03382 6.08559 6.11356 6.20644 6.24011 6.35530 7.10563 7.16413 7.22982 7.43306 7.63884 7.78385 8.14703 8.56929 8.99792 9.51674 11.00150 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.027565 B = 0.003837 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.522251 B = 7294.933565 C = 7821.496956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.088 3.912 3 H 0.101 0.899 4 C -0.137 4.137 5 C 0.086 3.914 6 N -0.681 5.681 7 C 0.066 3.934 8 C 0.062 3.938 9 O -0.399 6.399 10 C 0.197 3.803 11 C -0.515 4.515 12 H 0.065 0.935 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.180 4.180 20 C 0.088 3.912 21 H 0.058 0.942 22 C -0.145 4.145 23 O -0.376 6.376 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.357 0.643 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.004 0.996 36 H 0.006 0.994 37 H 0.264 0.736 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.289 12.873 12.942 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.030 3.970 3 H 0.119 0.881 4 C -0.175 4.175 5 C -0.024 4.024 6 N -0.313 5.313 7 C -0.064 4.064 8 C -0.016 4.016 9 O -0.319 6.319 10 C 0.123 3.877 11 C -0.553 4.553 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.735 3.265 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.220 4.220 20 C 0.030 3.970 21 H 0.076 0.924 22 C -0.203 4.203 23 O -0.296 6.296 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.177 0.823 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.317 13.282 12.599 21.523 hybrid contribution 0.749 -1.271 0.289 1.503 sum -10.568 12.012 12.888 20.544 Atomic orbital electron populations 1.22463 0.96664 1.02655 1.02555 1.22189 0.93283 0.96385 0.85187 0.88071 1.22181 1.02260 0.95226 0.97863 1.21620 0.98942 0.93677 0.88191 1.60587 1.07219 1.26346 1.37108 1.21977 0.96211 0.90911 0.97256 1.22295 0.87548 0.95736 0.96041 1.87785 1.30645 1.73032 1.40462 1.20174 0.91922 0.90196 0.85410 1.21051 1.01886 1.33786 0.98615 0.91639 1.24946 0.98773 0.96025 0.94726 1.69961 1.37978 1.40620 1.05183 0.86344 0.82617 0.79240 0.78336 1.20497 1.21047 1.19622 1.23004 1.02747 1.00116 0.96117 1.22017 0.97743 0.82194 0.95047 0.92397 1.21773 1.02281 1.00253 0.95951 1.87965 1.73855 1.24513 1.43235 0.91997 0.92075 0.91383 0.90317 0.90845 0.90692 0.82291 0.94802 0.90851 0.94204 0.93566 0.97848 0.97612 0.92645 0.90981 0.90551 0.91724 0.92069 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 8.65 37.16 0.32 -1.23 16 2 C 0.09 0.87 3.91 -26.68 -0.10 0.76 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.14 -1.52 5.25 -26.59 -0.14 -1.66 16 5 C 0.09 1.03 2.24 -67.53 -0.15 0.88 16 6 N -0.68 -10.10 6.26 -106.53 -0.67 -10.76 16 7 C 0.07 0.99 5.91 -3.82 -0.02 0.97 16 8 C 0.06 1.15 6.28 37.16 0.23 1.39 16 9 O -0.40 -9.54 9.85 -35.23 -0.35 -9.89 16 10 C 0.20 5.45 5.69 36.01 0.20 5.65 16 11 C -0.52 -15.22 9.43 -34.44 -0.32 -15.55 16 12 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 15 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.18 -2.13 4.68 -26.59 -0.12 -2.26 16 20 C 0.09 0.94 2.94 -26.68 -0.08 0.86 16 21 H 0.06 0.57 6.34 -51.93 -0.33 0.24 16 22 C -0.15 -1.38 9.57 37.16 0.36 -1.03 16 23 O -0.38 -4.44 10.24 -35.23 -0.36 -4.80 16 24 H 0.06 0.53 4.98 -51.93 -0.26 0.27 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.85 6.28 -51.93 -0.33 0.52 16 30 H 0.36 6.00 8.00 -39.29 -0.31 5.68 16 31 H 0.03 0.51 7.54 -51.93 -0.39 0.12 16 32 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.07 0.86 7.57 -51.93 -0.39 0.47 16 39 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -30.87 331.17 -8.07 -38.93 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.47 Total: 0.60 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.07 Total: -37.06 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.71 Total: -14.69 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.87 -8.07 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702148460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.342 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds