Wall clock time and date at job start Mon Mar 30 2020 04:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53098 * 109.47924 * 239.97571 * 2 1 3 5 5 C 1.53178 * 109.16479 * 297.61645 * 4 2 1 6 6 N 1.46892 * 109.54069 * 183.14939 * 5 4 2 7 7 C 1.46905 * 110.99798 * 204.99688 * 6 5 4 8 8 C 1.53006 * 109.46751 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47221 * 65.00716 * 8 7 6 10 10 C 1.42897 * 113.99891 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46719 * 179.97438 * 10 9 8 12 12 H 1.07990 * 120.00521 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99471 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00287 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99650 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47319 * 89.99979 * 15 13 11 17 17 H 1.48503 * 109.46785 * 210.00030 * 15 13 11 18 18 H 1.48498 * 109.47023 * 330.00072 * 15 13 11 19 19 C 1.53176 * 109.03581 * 303.01809 * 5 4 2 20 20 C 1.53102 * 109.16158 * 56.98146 * 19 5 4 21 21 H 1.08995 * 109.48102 * 62.37682 * 20 19 5 22 22 C 1.53001 * 109.47728 * 182.39901 * 20 19 5 23 23 O 1.42901 * 109.48873 * 120.02844 * 2 1 3 24 24 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 26 26 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 27 27 H 1.09002 * 109.51720 * 57.52404 * 4 2 1 28 28 H 1.08994 * 109.52068 * 177.70838 * 4 2 1 29 29 H 1.09003 * 109.54167 * 62.88238 * 5 4 2 30 30 H 1.00900 * 111.00083 * 81.04795 * 6 5 4 31 31 H 1.08991 * 109.47314 * 300.00324 * 7 6 5 32 32 H 1.08997 * 109.46678 * 60.00715 * 7 6 5 33 33 H 1.09002 * 109.46427 * 185.00015 * 8 7 6 34 34 H 1.08996 * 109.47282 * 304.99627 * 8 7 6 35 35 H 1.08998 * 109.47150 * 299.99401 * 10 9 8 36 36 H 1.08997 * 109.47552 * 59.99819 * 10 9 8 37 37 H 0.97006 * 120.00129 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.51926 * 176.88386 * 19 5 4 39 39 H 1.08997 * 109.52219 * 297.07986 * 19 5 4 40 40 H 1.08993 * 109.47586 * 59.99552 * 22 20 19 41 41 H 1.08997 * 109.47021 * 180.02562 * 22 20 19 42 42 H 1.09006 * 109.46962 * 299.99628 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2497 5 6 1.5760 -2.1813 -1.2123 6 7 2.1241 -2.9013 -2.3694 7 6 1.2871 -4.0582 -2.7144 8 6 1.8890 -4.7815 -3.9209 9 8 3.1600 -5.3279 -3.5633 10 6 3.8109 -6.0286 -4.6250 11 6 5.1352 -6.5589 -4.1391 12 1 5.4483 -6.3792 -3.1213 13 6 5.9467 -7.2745 -4.9938 14 7 5.5648 -7.4947 -6.2328 15 14 7.5880 -7.9324 -4.3914 16 1 7.3994 -9.2941 -3.8297 17 1 8.5436 -7.9932 -5.5265 18 1 8.1256 -7.0331 -3.3392 19 6 2.0769 -2.8322 0.0807 20 6 1.5650 -2.0285 1.2790 21 1 0.4755 -2.0552 1.2958 22 6 2.1104 -2.6375 2.5722 23 8 2.0068 -0.6741 1.1663 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6419 -0.2356 -2.1399 28 1 3.1297 -0.6872 -1.2711 29 1 0.4869 -2.2180 -1.2408 30 1 3.0784 -3.1828 -2.2012 31 1 1.2438 -4.7412 -1.8661 32 1 0.2807 -3.7184 -2.9590 33 1 1.2223 -5.5858 -4.2319 34 1 2.0148 -4.0758 -4.7420 35 1 3.1840 -6.8589 -4.9503 36 1 3.9767 -5.3492 -5.4610 37 1 6.1359 -7.9978 -6.8343 38 1 1.7042 -3.8546 0.1418 39 1 3.1669 -2.8397 0.0861 40 1 3.1999 -2.6104 2.5554 41 1 1.7455 -2.0655 3.4253 42 1 1.7739 -3.6708 2.6574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702148460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:26 Heat of formation + Delta-G solvation = -134.536218 kcal Electronic energy + Delta-G solvation = -19720.851623 eV Core-core repulsion = 16699.228677 eV Total energy + Delta-G solvation = -3021.622946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01228 -38.85922 -37.00218 -34.95048 -34.30982 -33.16712 -30.70914 -29.37012 -27.87504 -27.57799 -24.54513 -23.85377 -22.95237 -22.49700 -20.34811 -18.66024 -17.57148 -17.31185 -17.16389 -17.00740 -16.42178 -16.14142 -15.70183 -15.43076 -15.13752 -14.76531 -14.49002 -13.92519 -13.69016 -13.51792 -13.29825 -13.19719 -12.98586 -12.83429 -12.74807 -12.68644 -12.59224 -12.39832 -12.15558 -12.00145 -11.89858 -11.76930 -11.29590 -10.97779 -10.87098 -10.46072 -10.24232 -9.32780 -8.33524 -6.46130 1.39085 1.41845 1.53930 2.33479 2.81813 3.00438 3.13069 3.21017 3.70711 3.77902 3.92322 4.12476 4.15152 4.20428 4.31330 4.33664 4.41356 4.44630 4.53017 4.56417 4.64185 4.73469 4.80308 4.82548 4.87072 4.92427 5.00011 5.02784 5.12226 5.16306 5.19650 5.20447 5.28121 5.39889 5.53138 5.94122 6.11428 6.34285 6.36009 6.51570 6.79931 7.25931 8.78873 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.027565 B = 0.003837 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.522251 B = 7294.933565 C = 7821.496956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 H 0.112 0.888 4 C -0.133 4.133 5 C 0.088 3.912 6 N -0.690 5.690 7 C 0.075 3.925 8 C 0.053 3.947 9 O -0.409 6.409 10 C 0.211 3.789 11 C -0.549 4.549 12 H 0.062 0.938 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.983 3.017 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.265 1.265 19 C -0.176 4.176 20 C 0.089 3.911 21 H 0.073 0.927 22 C -0.145 4.145 23 O -0.393 6.393 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.342 0.658 31 H 0.034 0.966 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.042 0.958 35 H -0.015 1.015 36 H -0.016 1.016 37 H 0.271 0.729 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 13.230 14.043 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.028 3.972 3 H 0.130 0.870 4 C -0.172 4.172 5 C -0.022 4.022 6 N -0.320 5.320 7 C -0.054 4.054 8 C -0.024 4.024 9 O -0.329 6.329 10 C 0.136 3.864 11 C -0.586 4.586 12 H 0.080 0.920 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.806 3.194 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.189 1.189 19 C -0.216 4.216 20 C 0.031 3.969 21 H 0.091 0.909 22 C -0.202 4.202 23 O -0.313 6.313 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.160 0.840 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.003 0.997 36 H 0.002 0.998 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.844 13.658 13.708 22.687 hybrid contribution 0.827 -1.328 -0.084 1.567 sum -11.016 12.330 13.624 21.424 Atomic orbital electron populations 1.22419 0.95053 1.02833 1.03516 1.22312 0.94550 0.96473 0.83866 0.86987 1.22152 1.01151 0.94878 0.98988 1.21698 0.99600 0.93735 0.87156 1.60638 1.06447 1.26178 1.38761 1.21948 0.97137 0.90798 0.95473 1.22618 0.85597 0.96106 0.98057 1.87751 1.32967 1.72847 1.39315 1.19789 0.91694 0.89295 0.85587 1.21385 1.03228 1.35176 0.98852 0.92018 1.25961 1.02864 0.95673 0.94680 1.70068 1.39673 1.40842 1.06392 0.85185 0.77262 0.78823 0.78155 1.19233 1.19897 1.18909 1.22942 1.01408 1.00338 0.96876 1.22082 0.98499 0.81619 0.94726 0.90935 1.21792 1.01552 1.01048 0.95832 1.87953 1.74453 1.24979 1.43931 0.92142 0.91401 0.90184 0.89738 0.92697 0.89151 0.84001 0.94775 0.87684 0.93307 0.93944 0.99681 0.99798 0.92014 0.91143 0.92639 0.92871 0.91128 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.65 71.98 0.62 -1.91 16 2 C 0.09 1.55 3.91 30.63 0.12 1.67 16 3 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.13 -2.83 5.25 30.69 0.16 -2.67 16 5 C 0.09 2.00 2.24 45.04 0.10 2.10 16 6 N -0.69 -20.11 6.26 -490.96 -3.07 -23.19 16 7 C 0.08 2.18 5.91 86.30 0.51 2.69 16 8 C 0.05 2.00 6.28 71.98 0.45 2.45 16 9 O -0.41 -19.98 9.85 -148.98 -1.47 -21.44 16 10 C 0.21 12.05 5.69 71.24 0.41 12.46 16 11 C -0.55 -33.01 9.43 25.60 0.24 -32.77 16 12 H 0.06 3.66 7.81 -2.92 -0.02 3.64 16 13 C 0.01 0.39 5.46 84.66 0.46 0.86 16 14 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 15 Si 0.98 44.66 29.54 68.60 2.03 46.69 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 19 C -0.18 -4.06 4.68 30.69 0.14 -3.92 16 20 C 0.09 1.76 2.94 30.63 0.09 1.85 16 21 H 0.07 1.24 6.34 -2.39 -0.02 1.23 16 22 C -0.15 -2.59 9.57 71.98 0.69 -1.90 16 23 O -0.39 -8.78 10.24 -148.98 -1.53 -10.30 16 24 H 0.06 0.86 4.98 -2.39 -0.01 0.85 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.81 6.28 -2.39 -0.01 1.79 16 30 H 0.34 11.72 8.00 -89.69 -0.72 11.00 16 31 H 0.03 0.99 7.54 -2.39 -0.02 0.97 16 32 H 0.11 2.40 8.06 -2.39 -0.02 2.38 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 36 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 38 H 0.07 1.63 7.57 -2.39 -0.02 1.61 16 39 H 0.05 1.50 8.08 -2.39 -0.02 1.48 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -66.29 331.17 0.51 -65.78 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.26 Total: 17.69 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 4.00 Total: -19.09 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.79 Total: -79.33 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -2.99 Total: -31.75 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.29 0.51 -65.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702148460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.753 kcal (2) G-P(sol) polarization free energy of solvation -66.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds