Wall clock time and date at job start Mon Mar 30 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47276 * 2 1 4 4 C 1.53089 * 109.48130 * 120.02118 * 2 1 3 5 5 C 1.53174 * 109.16545 * 62.38613 * 4 2 1 6 6 N 1.46895 * 109.54353 * 176.84317 * 5 4 2 7 7 C 1.46909 * 110.99620 * 155.00091 * 6 5 4 8 8 C 1.53005 * 109.46762 * 180.02562 * 7 6 5 9 9 O 1.42890 * 109.47252 * 65.00085 * 8 7 6 10 10 C 1.42901 * 114.00075 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47307 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99603 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99838 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 C 1.53186 * 109.03392 * 56.98114 * 5 4 2 20 20 C 1.53090 * 109.16190 * 303.01785 * 19 5 4 21 21 H 1.08995 * 109.48435 * 297.63105 * 20 19 5 22 22 C 1.53003 * 109.48063 * 177.59050 * 20 19 5 23 23 O 1.42897 * 109.49272 * 239.97133 * 2 1 3 24 24 H 1.08999 * 109.47476 * 299.97326 * 1 2 3 25 25 H 1.08999 * 109.47154 * 59.98211 * 1 2 3 26 26 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.52125 * 302.47806 * 4 2 1 28 28 H 1.08998 * 109.52145 * 182.29628 * 4 2 1 29 29 H 1.09000 * 109.54585 * 297.02946 * 5 4 2 30 30 H 1.00900 * 110.99964 * 31.05592 * 6 5 4 31 31 H 1.09000 * 109.46736 * 60.00733 * 7 6 5 32 32 H 1.08997 * 109.47385 * 299.99952 * 7 6 5 33 33 H 1.09005 * 109.46902 * 304.99649 * 8 7 6 34 34 H 1.09005 * 109.46778 * 185.00299 * 8 7 6 35 35 H 1.09005 * 109.47211 * 60.00193 * 10 9 8 36 36 H 1.08998 * 109.47189 * 300.00217 * 10 9 8 37 37 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 38 38 H 1.08997 * 109.52222 * 62.92540 * 19 5 4 39 39 H 1.08998 * 109.51900 * 183.11701 * 19 5 4 40 40 H 1.09002 * 109.46847 * 300.05994 * 22 20 19 41 41 H 1.09000 * 109.47021 * 60.06139 * 22 20 19 42 42 H 1.09000 * 109.47148 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0406 -0.7221 1.2496 5 6 1.5760 -2.1812 1.2123 6 7 2.1244 -2.9012 2.3693 7 6 1.2873 -4.0581 2.7144 8 6 1.8887 -4.7807 3.9216 9 8 1.8381 -3.9234 5.0636 10 6 2.3776 -4.5058 6.2519 11 6 2.2728 -3.5198 7.3868 12 1 1.8374 -2.5461 7.2177 13 6 2.7328 -3.8610 8.6410 14 7 3.2626 -5.0469 8.8471 15 14 2.6023 -2.6392 10.0479 16 1 1.9723 -1.3864 9.5589 17 1 3.9596 -2.3389 10.5704 18 1 1.7717 -3.2205 11.1330 19 6 2.0771 -2.8321 -0.0807 20 6 1.5650 -2.0285 -1.2789 21 1 0.4755 -2.0552 -1.2958 22 6 2.1107 -2.6373 -2.5723 23 8 2.0068 -0.6741 -1.1663 24 1 -0.3634 0.5134 0.8902 25 1 -0.3633 0.5141 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6419 -0.2355 2.1398 28 1 3.1298 -0.6870 1.2711 29 1 0.4871 -2.2181 1.2424 30 1 2.2329 -2.2847 3.1606 31 1 1.2442 -4.7412 1.8661 32 1 0.2810 -3.7184 2.9591 33 1 2.9254 -5.0422 3.7091 34 1 1.3190 -5.6880 4.1228 35 1 3.4244 -4.7619 6.0881 36 1 1.8178 -5.4071 6.5013 37 1 3.3301 -5.6815 8.1165 38 1 3.1670 -2.8396 -0.0861 39 1 1.7044 -3.8546 -0.1418 40 1 3.2002 -2.6108 -2.5548 41 1 1.7736 -3.6703 -2.6580 42 1 1.7464 -2.0648 -3.4253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702148462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:29 Heat of formation + Delta-G solvation = -116.322699 kcal Electronic energy + Delta-G solvation = -19668.031362 eV Core-core repulsion = 16647.198214 eV Total energy + Delta-G solvation = -3020.833148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15700 -37.34600 -35.78601 -33.57297 -33.10294 -32.04829 -29.64912 -27.55228 -26.89464 -26.06588 -22.95665 -22.53353 -21.96739 -21.29409 -19.42900 -17.07685 -16.59268 -16.28837 -15.90429 -15.54093 -15.23898 -14.75045 -14.54062 -13.98000 -13.77493 -13.30927 -13.29503 -12.90228 -12.88329 -12.57621 -12.27464 -12.16434 -11.87620 -11.68486 -11.58058 -11.27283 -11.20637 -11.11436 -10.74149 -10.67651 -10.38751 -10.13886 -10.07462 -9.60993 -8.88361 -8.64981 -8.29960 -8.26213 -6.48429 -4.17231 3.41232 3.45699 3.56443 3.60287 4.12698 4.41968 4.49666 4.62890 4.76872 4.80325 4.89976 4.96717 5.11533 5.14182 5.18516 5.29734 5.32135 5.34780 5.43006 5.52288 5.59935 5.66744 5.68685 5.77192 5.82969 5.87862 5.94581 6.01645 6.03444 6.08813 6.19471 6.29248 6.75102 7.10670 7.11484 7.17230 7.57374 7.86513 8.15830 8.61376 8.78757 9.53639 10.91996 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.033060 B = 0.003605 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.741703 B = 7765.880089 C = 8328.008631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.092 3.908 3 H 0.103 0.897 4 C -0.153 4.153 5 C 0.085 3.915 6 N -0.683 5.683 7 C 0.067 3.933 8 C 0.059 3.941 9 O -0.391 6.391 10 C 0.188 3.812 11 C -0.597 4.597 12 H 0.060 0.940 13 C 0.016 3.984 14 N -0.912 5.912 15 Si 1.084 2.916 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.137 4.137 20 C 0.083 3.917 21 H 0.057 0.943 22 C -0.143 4.143 23 O -0.375 6.375 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.357 0.643 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.040 0.960 35 H -0.004 1.004 36 H -0.006 1.006 37 H 0.268 0.732 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 6.425 -20.780 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.034 3.966 3 H 0.121 0.879 4 C -0.191 4.191 5 C -0.025 4.025 6 N -0.316 5.316 7 C -0.062 4.062 8 C -0.018 4.018 9 O -0.310 6.310 10 C 0.113 3.887 11 C -0.635 4.635 12 H 0.079 0.921 13 C -0.187 4.187 14 N -0.548 5.548 15 Si 0.912 3.088 16 H -0.213 1.213 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.175 4.175 20 C 0.025 3.975 21 H 0.075 0.925 22 C -0.201 4.201 23 O -0.295 6.295 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.177 0.823 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.014 0.986 36 H 0.012 0.988 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.140 6.531 -19.667 21.132 hybrid contribution -1.175 -0.383 -0.962 1.566 sum -5.315 6.148 -20.629 22.172 Atomic orbital electron populations 1.22485 0.96580 1.02766 1.02707 1.22111 0.93291 0.96339 0.84881 0.87919 1.22397 1.02942 0.95275 0.98504 1.21551 0.96630 0.92505 0.91795 1.60487 1.50368 1.11534 1.09170 1.21974 0.94654 0.93354 0.96241 1.22343 0.99441 0.93064 0.86993 1.87811 1.83595 1.41447 1.18178 1.20271 0.91846 0.94427 0.82120 1.21947 1.44587 1.02328 0.94611 0.92142 1.25943 0.93333 0.99575 0.99834 1.70739 1.41908 1.06246 1.35887 0.83331 0.76711 0.74248 0.74527 1.21309 1.21115 1.21170 1.22252 1.02778 0.99158 0.93312 1.22111 0.97852 0.82284 0.95287 0.92464 1.21749 1.02203 1.00201 0.95902 1.87961 1.73821 1.24590 1.43113 0.91365 0.91893 0.91941 0.90713 0.89996 0.93819 0.82304 0.90707 0.94812 0.93514 0.94181 0.98594 0.98849 0.92217 0.90260 0.91320 0.91731 0.91207 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 8.65 37.16 0.32 -1.35 16 2 C 0.09 0.93 3.91 -26.68 -0.10 0.82 16 3 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.15 -1.73 4.91 -26.60 -0.13 -1.86 16 5 C 0.09 1.04 2.27 -67.53 -0.15 0.89 16 6 N -0.68 -10.23 6.31 -106.52 -0.67 -10.90 16 7 C 0.07 1.02 5.91 -3.82 -0.02 1.00 16 8 C 0.06 1.12 6.28 37.16 0.23 1.35 16 9 O -0.39 -9.44 9.84 -35.23 -0.35 -9.78 16 10 C 0.19 5.18 5.00 36.01 0.18 5.36 16 11 C -0.60 -17.84 9.43 -34.44 -0.32 -18.17 16 12 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 13 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 14 N -0.91 -28.14 13.65 55.43 0.76 -27.39 16 15 Si 1.08 25.64 29.90 -169.99 -5.08 20.56 16 16 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.14 -1.52 4.91 -26.59 -0.13 -1.65 16 20 C 0.08 0.83 2.94 -26.68 -0.08 0.75 16 21 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 22 C -0.14 -1.20 9.56 37.16 0.36 -0.85 16 23 O -0.38 -4.31 10.24 -35.23 -0.36 -4.67 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.58 4.98 -51.93 -0.26 0.32 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.53 6.28 -51.93 -0.33 0.21 16 30 H 0.36 5.96 7.92 -39.29 -0.31 5.65 16 31 H 0.07 0.97 7.54 -51.93 -0.39 0.58 16 32 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.00 -0.10 8.01 -51.93 -0.42 -0.52 16 36 H -0.01 -0.17 8.01 -51.93 -0.42 -0.59 16 37 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.73 7.57 -51.93 -0.39 0.33 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -31.88 329.81 -8.10 -39.97 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.41 Total: 0.57 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 0.05 Total: -13.33 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.08 Total: -38.29 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.71 Total: -14.46 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.88 -8.10 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702148462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.349 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds