Wall clock time and date at job start Mon Mar 30 2020 05:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.46845 * 2 1 4 4 C 1.42896 * 113.99571 * 183.31748 * 3 2 1 5 5 C 1.53001 * 109.54454 * 61.69421 * 4 3 2 6 6 N 1.46503 * 109.46809 * 64.82263 * 5 4 3 7 7 C 1.36934 * 120.00243 * 91.76212 * 6 5 4 8 8 H 1.08004 * 119.99676 * 217.85496 * 7 6 5 9 9 C 1.38811 * 119.99946 * 38.13061 * 7 6 5 10 10 N 1.31618 * 119.99727 * 215.06262 * 9 7 6 11 11 Si 1.86796 * 120.00018 * 35.06837 * 9 7 6 12 12 H 1.48507 * 109.47196 * 92.69603 * 11 9 7 13 13 H 1.48504 * 109.47157 * 212.69698 * 11 9 7 14 14 H 1.48506 * 109.47231 * 332.69709 * 11 9 7 15 15 C 1.46504 * 119.99571 * 271.75597 * 6 5 4 16 16 C 1.53001 * 109.47114 * 274.92481 * 15 6 5 17 17 C 1.53178 * 109.61416 * 181.91478 * 4 3 2 18 18 C 1.53089 * 109.16534 * 62.92969 * 17 4 3 19 19 O 1.42909 * 109.41169 * 57.61088 * 18 17 4 20 20 C 1.42912 * 114.09703 * 298.83964 * 19 18 17 21 21 C 1.53096 * 109.41218 * 61.15944 * 20 19 18 22 22 H 1.09002 * 109.47552 * 299.99727 * 1 2 3 23 23 H 1.09003 * 109.47614 * 60.00042 * 1 2 3 24 24 H 1.09000 * 109.47420 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46934 * 240.00106 * 2 1 3 26 26 H 1.08997 * 109.46919 * 119.99450 * 2 1 3 27 27 H 1.08997 * 109.47066 * 304.82390 * 5 4 3 28 28 H 1.08993 * 109.47174 * 184.81588 * 5 4 3 29 29 H 0.97008 * 119.99524 * 179.97438 * 10 9 7 30 30 H 1.08993 * 109.47235 * 34.92486 * 15 6 5 31 31 H 1.09001 * 109.46789 * 154.92530 * 15 6 5 32 32 H 1.08995 * 109.47402 * 64.85670 * 16 15 6 33 33 H 1.09001 * 109.47020 * 184.85870 * 16 15 6 34 34 H 1.09004 * 109.47152 * 304.85284 * 16 15 6 35 35 H 1.08995 * 109.52390 * 182.83625 * 17 4 3 36 36 H 1.09003 * 109.52463 * 303.02798 * 17 4 3 37 37 H 1.09001 * 109.48391 * 297.62908 * 18 17 4 38 38 H 1.08999 * 109.49771 * 177.59787 * 18 17 4 39 39 H 1.08997 * 109.48080 * 301.18158 * 20 19 18 40 40 H 1.08995 * 109.49060 * 181.15033 * 20 19 18 41 41 H 1.08994 * 109.52450 * 182.48722 * 21 20 19 42 42 H 1.08997 * 109.57070 * 62.32578 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4287 1.4609 -0.0755 5 6 3.9225 0.8446 -1.3860 6 7 3.4082 1.6227 -2.5158 7 6 4.1472 2.6548 -3.0293 8 1 3.6558 3.5565 -3.3641 9 6 5.5273 2.5400 -3.1247 10 7 6.2900 3.5960 -2.9365 11 14 6.3018 0.8869 -3.5203 12 1 6.4969 0.7702 -4.9879 13 1 7.6155 0.7793 -2.8362 14 1 5.4088 -0.2031 -3.0515 15 6 2.1032 1.2964 -3.0962 16 6 2.2697 0.1819 -4.1312 17 6 3.8303 2.9381 -0.0207 18 6 3.4017 3.5257 1.3264 19 8 4.0040 2.7771 2.3844 20 6 3.6274 1.3988 2.4117 21 6 4.0651 0.7258 1.1081 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.5671 -0.1831 -1.4608 28 1 5.0122 0.8545 -1.4043 29 1 7.2545 3.5157 -3.0029 30 1 1.4283 0.9626 -2.3082 31 1 1.6887 2.1815 -3.5789 32 1 2.6024 -0.7291 -3.6338 33 1 1.3151 -0.0014 -4.6245 34 1 3.0101 0.4822 -4.8727 35 1 4.9113 3.0259 -0.1290 36 1 3.3372 3.4799 -0.8278 37 1 2.3167 3.4743 1.4168 38 1 3.7227 4.5655 1.3884 39 1 2.5454 1.3196 2.5161 40 1 4.1110 0.9063 3.2552 41 1 3.7399 -0.3145 1.1082 42 1 5.1508 0.7681 1.0220 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702657973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:51 Heat of formation + Delta-G solvation = -90.470250 kcal Electronic energy + Delta-G solvation = -21913.669634 eV Core-core repulsion = 18893.957532 eV Total energy + Delta-G solvation = -3019.712102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18497 -38.51146 -37.22316 -34.10955 -33.91685 -32.07991 -31.31729 -30.94266 -28.39985 -25.64572 -24.83933 -24.06451 -23.15729 -21.80198 -20.68222 -18.87200 -17.69566 -16.92589 -16.89468 -16.60339 -16.47979 -16.18030 -15.57462 -15.42790 -14.93387 -14.89785 -14.27718 -13.97515 -13.68945 -13.61092 -13.29775 -13.07677 -12.92571 -12.89505 -12.68915 -12.60720 -12.27586 -12.24274 -12.15691 -11.91494 -11.62728 -11.52778 -11.23045 -11.10783 -10.54571 -10.46658 -10.17314 -8.59308 -8.22333 -5.40375 1.30954 1.41908 1.48175 2.46113 2.82133 3.00588 3.06985 3.46579 3.89058 3.97812 4.01194 4.15373 4.27567 4.38059 4.42492 4.47119 4.48064 4.56405 4.62088 4.68468 4.71650 4.81934 4.83758 4.86465 4.93570 4.97892 5.03922 5.08292 5.15181 5.21028 5.26012 5.34841 5.37379 5.56114 5.63335 5.97670 6.24815 6.32214 6.54078 7.07362 7.73172 8.19907 8.97533 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.010750 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.120917 B = 2603.963833 C = 3474.491614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 O -0.377 6.377 4 C 0.109 3.891 5 C 0.132 3.868 6 N -0.599 5.599 7 C -0.248 4.248 8 H 0.037 0.963 9 C 0.005 3.995 10 N -0.917 5.917 11 Si 0.892 3.108 12 H -0.300 1.300 13 H -0.302 1.302 14 H -0.247 1.247 15 C 0.139 3.861 16 C -0.163 4.163 17 C -0.107 4.107 18 C 0.071 3.929 19 O -0.403 6.403 20 C 0.070 3.930 21 C -0.181 4.181 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 -9.494 8.852 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 O -0.296 6.296 4 C 0.067 3.933 5 C 0.006 3.994 6 N -0.321 5.321 7 C -0.377 4.377 8 H 0.055 0.945 9 C -0.193 4.193 10 N -0.559 5.559 11 Si 0.719 3.281 12 H -0.229 1.229 13 H -0.230 1.230 14 H -0.170 1.170 15 C 0.015 3.985 16 C -0.222 4.222 17 C -0.145 4.145 18 C -0.005 4.005 19 O -0.322 6.322 20 C -0.007 4.007 21 C -0.220 4.220 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.848 -9.178 8.985 16.185 hybrid contribution 1.180 -0.691 -1.097 1.753 sum -8.668 -9.870 7.888 15.322 Atomic orbital electron populations 1.21709 0.92546 1.03072 1.02523 1.22658 0.96290 0.84400 1.00150 1.87923 1.20268 1.26845 1.94611 1.21990 0.81187 0.95945 0.94136 1.21644 0.96623 0.93874 0.87262 1.43988 1.18908 1.37004 1.32236 1.18348 0.88468 0.92785 1.38112 0.94507 1.25822 0.96797 0.97721 0.99002 1.70172 1.04612 1.32242 1.48890 0.86596 0.77672 0.86014 0.77782 1.22853 1.22966 1.17025 1.21062 0.86848 0.95843 0.94785 1.22265 1.00986 0.99257 0.99711 1.21698 1.00144 0.94920 0.97713 1.22541 0.97153 0.95188 0.85646 1.87838 1.71391 1.21997 1.51021 1.22564 0.99981 0.81250 0.96880 1.22786 1.01481 1.01257 0.96447 0.92044 0.92749 0.89303 0.93921 0.92403 0.92689 0.94740 0.93126 0.91546 0.94340 0.93869 0.91052 0.95201 0.93405 0.91424 0.92331 0.89214 0.92225 0.87144 0.88786 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 10.27 71.98 0.74 -2.11 16 2 C 0.04 1.04 4.80 71.98 0.35 1.38 16 3 O -0.38 -12.30 7.97 -148.98 -1.19 -13.49 16 4 C 0.11 3.94 0.49 -10.67 -0.01 3.94 16 5 C 0.13 5.41 3.04 86.38 0.26 5.67 16 6 N -0.60 -27.01 1.66 -702.00 -1.17 -28.17 16 7 C -0.25 -13.42 7.73 84.03 0.65 -12.77 16 8 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 9 C 0.01 0.31 4.99 84.86 0.42 0.73 16 10 N -0.92 -55.28 13.97 21.65 0.30 -54.97 16 11 Si 0.89 44.34 26.41 68.60 1.81 46.15 16 12 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 13 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 14 H -0.25 -11.35 6.02 99.48 0.60 -10.75 16 15 C 0.14 5.33 6.24 86.38 0.54 5.87 16 16 C -0.16 -5.56 10.24 71.98 0.74 -4.83 16 17 C -0.11 -4.45 4.28 30.68 0.13 -4.32 16 18 C 0.07 2.50 6.70 72.01 0.48 2.98 16 19 O -0.40 -13.72 10.77 -148.98 -1.60 -15.32 16 20 C 0.07 1.90 6.70 72.01 0.48 2.39 16 21 C -0.18 -5.44 4.60 30.69 0.14 -5.30 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.19 7.87 -2.39 -0.02 1.17 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 1.14 5.57 -2.39 -0.01 1.13 16 26 H 0.06 1.25 6.51 -2.39 -0.02 1.24 16 27 H 0.05 2.03 6.22 -2.39 -0.01 2.02 16 28 H 0.03 1.58 4.66 -2.39 -0.01 1.57 16 29 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 30 H 0.07 2.27 5.05 -2.39 -0.01 2.26 16 31 H 0.04 1.54 8.00 -2.39 -0.02 1.52 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 3.24 6.63 -2.39 -0.02 3.22 16 37 H 0.06 1.94 7.82 -2.39 -0.02 1.92 16 38 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.06 1.53 7.82 -2.39 -0.02 1.51 16 40 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.09 2.31 6.44 -2.39 -0.02 2.30 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -62.83 313.33 3.95 -58.88 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.87 Total: 13.31 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 4.93 Total: -6.37 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -0.86 Total: -83.15 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -2.79 Total: -28.81 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.81 Total: 46.15 kcal Total: -62.83 3.95 -58.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702657973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.590 kcal (2) G-P(sol) polarization free energy of solvation -62.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds