Wall clock time and date at job start Mon Mar 30 2020 05:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46718 * 2 1 4 4 C 1.53003 * 109.47060 * 119.99874 * 2 1 3 5 5 C 1.50700 * 109.47074 * 193.40513 * 4 2 1 6 6 H 1.08009 * 119.99758 * 7.78351 * 5 4 2 7 7 C 1.37878 * 120.00421 * 187.78330 * 5 4 2 8 8 N 1.31517 * 119.99194 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00410 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46985 * 60.00075 * 9 7 5 11 11 H 1.48496 * 109.46968 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47153 * 300.00326 * 9 7 5 13 13 N 1.46896 * 109.47449 * 240.00151 * 2 1 3 14 14 C 1.46854 * 111.00082 * 42.02812 * 13 2 1 15 15 C 1.53033 * 109.52175 * 185.84365 * 14 13 2 16 16 C 1.53124 * 109.28077 * 300.81666 * 15 14 13 17 17 C 1.53119 * 109.15741 * 57.65754 * 16 15 14 18 18 H 1.09003 * 109.53863 * 62.30676 * 17 16 15 19 19 C 1.52994 * 109.50289 * 182.40698 * 17 16 15 20 20 O 1.42900 * 109.47324 * 294.80364 * 19 17 16 21 21 C 1.46847 * 111.00199 * 166.23792 * 13 2 1 22 22 H 1.08995 * 109.46061 * 54.14862 * 21 13 2 23 23 C 1.53001 * 109.46375 * 294.17499 * 21 13 2 24 24 O 1.42894 * 109.46880 * 67.84827 * 23 21 13 25 25 H 1.09005 * 109.46809 * 174.76226 * 1 2 3 26 26 H 1.09002 * 109.47446 * 294.76165 * 1 2 3 27 27 H 1.09001 * 109.47238 * 54.76352 * 1 2 3 28 28 H 1.08996 * 109.47044 * 313.40709 * 4 2 1 29 29 H 1.08996 * 109.47044 * 73.40780 * 4 2 1 30 30 H 0.97003 * 119.99310 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.45948 * 305.85411 * 14 13 2 32 32 H 1.08995 * 109.46334 * 65.82157 * 14 13 2 33 33 H 1.09008 * 109.50045 * 180.87902 * 15 14 13 34 34 H 1.09002 * 109.54337 * 60.78195 * 15 14 13 35 35 H 1.08994 * 109.51916 * 297.75671 * 16 15 14 36 36 H 1.08989 * 109.52524 * 177.56277 * 16 15 14 37 37 H 1.08996 * 109.47324 * 54.80518 * 19 17 16 38 38 H 1.08999 * 109.47596 * 174.80017 * 19 17 16 39 39 H 0.96697 * 114.00155 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.47233 * 187.84974 * 23 21 13 41 41 H 1.09001 * 109.46960 * 307.85433 * 23 21 13 42 42 H 0.96701 * 113.99875 * 184.96582 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5105 -0.4424 1.4252 6 1 4.0018 0.2833 0.7939 7 6 4.2287 -1.1137 2.3919 8 7 3.6305 -1.9977 3.1602 9 14 6.0516 -0.7686 2.6094 10 1 6.2473 0.6642 2.9473 11 1 6.5877 -1.6132 3.7068 12 1 6.7688 -1.0819 1.3473 13 7 2.0197 -0.6924 -1.1994 14 6 1.2350 -0.3153 -2.3821 15 6 1.6758 -1.1608 -3.5791 16 6 3.1673 -0.9310 -3.8386 17 6 3.9575 -1.2852 -2.5758 18 1 3.8203 -2.3415 -2.3442 19 6 5.4431 -1.0015 -2.8065 20 8 5.9437 -1.8773 -3.8185 21 6 3.4505 -0.4361 -1.4077 22 1 4.0014 -0.6961 -0.5039 23 6 3.6621 1.0456 -1.7250 24 8 3.3618 1.8281 -0.5677 25 1 -0.3633 -1.0234 -0.0938 26 1 -0.3634 0.4304 0.9332 27 1 -0.3634 0.5929 -0.8394 28 1 1.4953 -0.3636 2.1230 29 1 1.8844 -1.7943 1.1382 30 1 4.1358 -2.4703 3.8400 31 1 0.1768 -0.4877 -2.1858 32 1 1.3961 0.7396 -2.6035 33 1 1.1040 -0.8698 -4.4604 34 1 1.5020 -2.2153 -3.3644 35 1 3.3358 0.1156 -4.0921 36 1 3.4953 -1.5639 -4.6630 37 1 5.5702 0.0329 -3.1257 38 1 5.9926 -1.1657 -1.8796 39 1 6.8818 -1.7529 -4.0174 40 1 4.6996 1.2103 -2.0158 41 1 3.0044 1.3395 -2.5430 42 1 3.4008 2.7827 -0.7174 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709861138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:42 Heat of formation + Delta-G solvation = -89.733583 kcal Electronic energy + Delta-G solvation = -21678.589910 eV Core-core repulsion = 18658.909752 eV Total energy + Delta-G solvation = -3019.680158 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.85532 -36.79400 -35.64894 -34.53251 -32.53545 -31.33383 -29.82534 -27.49103 -25.97036 -25.17494 -23.22012 -22.24150 -21.28163 -19.01580 -18.26862 -17.57175 -16.78773 -16.20063 -15.67259 -15.07844 -14.57238 -14.33635 -13.96453 -13.85464 -13.33290 -12.93352 -12.64972 -12.61686 -12.36785 -11.90128 -11.82522 -11.42552 -11.26694 -11.00608 -10.88446 -10.76540 -10.55228 -10.40324 -10.29640 -10.21893 -10.09878 -9.76696 -9.57101 -9.11012 -8.82809 -8.60272 -8.17688 -7.13686 -5.84221 -3.79399 3.36998 3.43331 3.44325 4.29017 4.55039 4.56720 4.92367 5.08184 5.21049 5.33422 5.42370 5.49482 5.58853 5.63157 5.74532 5.81786 5.83730 5.94005 6.03208 6.09803 6.10855 6.17585 6.22022 6.27645 6.42839 6.50673 6.55817 6.73301 6.76703 7.16463 7.23360 7.32689 7.71858 7.76011 7.92487 8.06328 8.09881 8.24897 8.38583 8.69511 9.28792 9.78086 11.27693 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.010012 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.599924 B = 2795.836828 C = 3760.472824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.085 0.915 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.080 0.920 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.280 1.280 13 N -0.508 5.508 14 C 0.042 3.958 15 C -0.116 4.116 16 C -0.111 4.111 17 C -0.076 4.076 18 H 0.089 0.911 19 C 0.077 3.923 20 O -0.573 6.573 21 C 0.069 3.931 22 H 0.150 0.850 23 C 0.039 3.961 24 O -0.533 6.533 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.009 0.991 29 H 0.026 0.974 30 H 0.257 0.743 31 H 0.073 0.927 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.373 0.627 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 5.467 -13.499 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 H 0.102 0.898 4 C -0.005 4.005 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.710 3.290 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.206 1.206 13 N -0.232 5.232 14 C -0.087 4.087 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.095 4.095 18 H 0.107 0.893 19 C -0.001 4.001 20 O -0.378 6.378 21 C -0.040 4.040 22 H 0.167 0.833 23 C -0.040 4.040 24 O -0.337 6.337 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.027 0.973 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.219 0.781 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.511 4.024 -12.978 13.597 hybrid contribution 1.809 1.765 -0.253 2.540 sum 1.298 5.789 -13.231 14.500 Atomic orbital electron populations 1.22043 0.97736 1.00813 0.99905 1.22409 0.91715 0.99417 0.91015 0.89779 1.19091 0.95435 0.96202 0.89724 1.21598 0.94745 1.21591 1.16314 0.90206 1.25040 0.97606 0.95685 0.96392 1.69972 1.35765 1.26454 1.21499 0.86845 0.86634 0.78036 0.77528 1.20497 1.21613 1.20552 1.62052 1.01110 1.58048 1.01950 1.22236 0.98689 0.96209 0.91516 1.21592 0.95589 1.01231 0.96959 1.21586 0.95198 1.00411 0.97641 1.21130 0.91578 1.02065 0.94691 0.89266 1.22355 0.95443 0.91893 0.90396 1.86466 1.29448 1.62375 1.59497 1.22479 0.91677 0.88984 1.00827 0.83283 1.23158 0.97836 0.94907 0.88072 1.86927 1.91985 1.19719 1.35088 0.92975 0.93000 0.94506 0.97295 0.95539 0.93347 0.90918 0.95954 0.92624 0.91290 0.93082 0.91870 0.94048 0.93028 0.78098 0.94554 0.94352 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.03 37.16 0.30 -2.41 16 2 C 0.06 1.29 2.21 -67.72 -0.15 1.14 16 3 H 0.09 1.82 4.37 -45.92 -0.20 1.62 16 4 C 0.03 0.86 4.63 -27.88 -0.13 0.73 16 5 C -0.50 -13.81 6.73 -34.44 -0.23 -14.04 16 6 H 0.08 2.10 4.02 -52.48 -0.21 1.89 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -27.21 13.27 55.43 0.74 -26.47 16 9 Si 0.88 21.69 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.51 -9.93 4.46 -218.76 -0.98 -10.90 16 14 C 0.04 0.67 4.44 -3.83 -0.02 0.66 16 15 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 16 C -0.11 -1.60 4.85 -26.61 -0.13 -1.73 16 17 C -0.08 -1.27 2.37 -90.54 -0.21 -1.48 16 18 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 19 C 0.08 1.14 5.91 37.15 0.22 1.36 16 20 O -0.57 -7.88 13.25 -35.23 -0.47 -8.35 16 21 C 0.07 1.30 1.92 -67.72 -0.13 1.17 16 22 H 0.15 3.46 4.24 -51.93 -0.22 3.24 16 23 C 0.04 0.64 5.37 37.16 0.20 0.84 16 24 O -0.53 -9.28 8.39 -35.23 -0.30 -9.58 16 25 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 26 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 27 H 0.04 0.59 6.61 -51.93 -0.34 0.24 16 28 H 0.01 0.25 8.03 -51.93 -0.42 -0.17 16 29 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.07 1.15 5.93 -51.93 -0.31 0.84 16 32 H 0.02 0.35 6.03 -51.93 -0.31 0.04 16 33 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.70 6.74 -51.93 -0.35 0.35 16 36 H 0.06 0.90 7.90 -51.94 -0.41 0.49 16 37 H 0.04 0.54 6.52 -51.93 -0.34 0.21 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.37 3.32 9.12 45.56 0.42 3.74 16 40 H 0.04 0.54 6.12 -51.93 -0.32 0.22 16 41 H 0.04 0.58 4.82 -51.93 -0.25 0.33 16 42 H 0.35 4.38 9.12 52.00 0.47 4.85 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -31.86 303.03 -6.88 -38.74 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.88 Total: 9.52 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.54 Total: -14.18 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.24 Total: -37.37 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.76 Total: -17.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.86 -6.88 -38.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709861138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.998 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds