Wall clock time and date at job start Mon Mar 30 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99971 * 2 1 4 4 O 1.42896 * 109.47028 * 83.04930 * 3 2 1 5 5 C 1.42894 * 114.00329 * 286.90450 * 4 3 2 6 6 C 1.53001 * 109.46823 * 203.04681 * 3 2 1 7 7 H 1.08992 * 109.47242 * 305.17605 * 6 3 2 8 8 C 1.53005 * 109.46988 * 65.17718 * 6 3 2 9 9 N 1.46896 * 109.46878 * 185.17457 * 6 3 2 10 10 C 1.46903 * 111.00172 * 297.17461 * 9 6 3 11 11 C 1.46903 * 111.00018 * 173.22484 * 9 6 3 12 12 C 1.52991 * 109.47364 * 195.06534 * 11 9 6 13 13 C 1.50704 * 115.55067 * 39.27071 * 12 11 9 14 14 H 1.08003 * 119.99860 * 269.63838 * 13 12 11 15 15 C 1.37876 * 119.99874 * 89.63770 * 13 12 11 16 16 N 1.31518 * 119.99981 * 182.36038 * 15 13 12 17 17 Si 1.86802 * 120.00032 * 2.35561 * 15 13 12 18 18 H 1.48495 * 109.46972 * 84.99467 * 17 15 13 19 19 H 1.48500 * 109.47055 * 204.99522 * 17 15 13 20 20 H 1.48502 * 109.46915 * 324.99347 * 17 15 13 21 21 C 1.53003 * 117.50055 * 253.56657 * 12 11 9 22 22 C 1.53000 * 117.50203 * 184.94108 * 12 11 9 23 23 H 1.09001 * 109.47408 * 66.16812 * 1 2 3 24 24 H 1.09004 * 109.47278 * 186.17391 * 1 2 3 25 25 H 1.09004 * 109.47159 * 306.16723 * 1 2 3 26 26 H 1.08996 * 109.46967 * 323.04857 * 3 2 1 27 27 H 1.09005 * 109.47712 * 197.49397 * 5 4 3 28 28 H 1.09005 * 109.47217 * 317.49573 * 5 4 3 29 29 H 1.09004 * 109.47257 * 77.49174 * 5 4 3 30 30 H 1.09003 * 109.46921 * 59.99237 * 8 6 3 31 31 H 1.09003 * 109.46927 * 299.99493 * 8 6 3 32 32 H 1.08993 * 109.47153 * 179.97438 * 8 6 3 33 33 H 1.09002 * 109.46732 * 63.66071 * 10 9 6 34 34 H 1.08996 * 109.47261 * 183.66635 * 10 9 6 35 35 H 1.09002 * 109.47068 * 303.66677 * 10 9 6 36 36 H 1.08998 * 109.46956 * 315.06890 * 11 9 6 37 37 H 1.09001 * 109.47335 * 75.06230 * 11 9 6 38 38 H 0.96995 * 120.00219 * 179.97438 * 16 15 13 39 39 H 1.09000 * 117.49760 * 359.97438 * 21 12 11 40 40 H 1.09003 * 117.50360 * 145.01953 * 21 12 11 41 41 H 1.09000 * 117.49962 * 214.97405 * 22 12 11 42 42 H 1.08996 * 117.49625 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 2.0550 1.8069 1.3373 5 6 0.7811 2.1944 1.8558 6 6 3.4303 1.2314 -0.5647 7 1 4.0067 0.4964 -0.0032 8 6 3.3728 0.8180 -2.0368 9 7 4.0719 2.5479 -0.4505 10 6 3.3587 3.5523 -1.2509 11 6 5.4883 2.4783 -0.8338 12 6 6.2086 3.7407 -0.3561 13 6 5.7963 4.2501 1.0011 14 1 4.9916 4.9651 1.0879 15 6 6.4466 3.8032 2.1318 16 7 6.0566 4.2120 3.3194 17 14 7.8814 2.6171 1.9769 18 1 9.1311 3.3812 1.7329 19 1 8.0158 1.8361 3.2328 20 1 7.6377 1.6911 0.8418 21 6 6.5931 4.7776 -1.4134 22 6 7.6740 3.9138 -0.7603 23 1 -0.3634 0.4152 -0.9400 24 1 -0.3634 -1.0217 0.1105 25 1 -0.3634 0.6065 0.8297 26 1 1.4078 1.9714 -0.6178 27 1 0.9226 2.8371 2.7248 28 1 0.2265 2.7363 1.0896 29 1 0.2222 1.3055 2.1485 30 1 2.7962 1.5531 -2.5983 31 1 2.8967 -0.1589 -2.1215 32 1 4.3844 0.7657 -2.4392 33 1 2.3499 3.6802 -0.8584 34 1 3.8914 4.5020 -1.2006 35 1 3.3057 3.2199 -2.2877 36 1 5.9464 1.6026 -0.3742 37 1 5.5680 2.4029 -1.9183 38 1 6.5138 3.8974 4.1149 39 1 6.3333 4.5602 -2.4494 40 1 6.5479 5.8286 -1.1276 41 1 8.3398 4.3965 -0.0449 42 1 8.1251 3.1280 -1.3663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714484906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:48 Heat of formation + Delta-G solvation = -40.918762 kcal Electronic energy + Delta-G solvation = -21143.076297 eV Core-core repulsion = 18125.512909 eV Total energy + Delta-G solvation = -3017.563388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.42431 -37.77945 -35.77977 -35.61844 -31.79661 -30.59618 -27.94826 -27.13133 -25.87356 -25.36590 -24.93915 -23.26897 -21.56483 -19.66175 -18.68968 -17.25503 -17.00158 -16.07289 -15.67341 -14.95058 -14.63892 -14.23105 -14.16650 -14.01361 -13.55353 -13.32186 -13.16316 -12.80601 -12.49820 -12.18808 -12.05891 -11.90590 -11.48496 -11.39057 -11.20621 -11.06809 -10.90782 -10.40305 -10.30688 -10.23611 -9.92612 -9.74735 -9.47357 -9.40781 -8.88594 -8.32005 -8.28547 -7.35971 -5.83069 -3.79787 3.44720 3.54227 3.56748 3.61092 4.04112 4.64803 4.71820 4.89693 5.05443 5.12303 5.23090 5.26632 5.40275 5.43503 5.48614 5.50532 5.60426 5.65932 5.81491 5.89866 5.95007 5.96261 6.02863 6.06637 6.20152 6.22682 6.32527 6.41782 6.50073 6.53428 6.70660 6.80746 7.14294 7.16801 7.22539 7.47862 7.80416 7.90288 8.05577 8.77452 9.20886 9.81405 11.30345 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021813 B = 0.007599 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.347702 B = 3683.795564 C = 4204.653600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.397 6.397 3 C 0.255 3.745 4 O -0.352 6.352 5 C 0.024 3.976 6 C 0.096 3.904 7 H 0.093 0.907 8 C -0.183 4.183 9 N -0.486 5.486 10 C 0.028 3.972 11 C 0.097 3.903 12 C 0.012 3.988 13 C -0.446 4.446 14 H 0.076 0.924 15 C 0.077 3.923 16 N -0.903 5.903 17 Si 0.881 3.119 18 H -0.284 1.284 19 H -0.300 1.300 20 H -0.266 1.266 21 C -0.187 4.187 22 C -0.207 4.207 23 H 0.039 0.961 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.014 0.986 36 H 0.065 0.935 37 H 0.012 0.988 38 H 0.259 0.741 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 -6.098 -9.529 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.318 6.318 3 C 0.159 3.841 4 O -0.271 6.271 5 C -0.072 4.072 6 C -0.014 4.014 7 H 0.112 0.888 8 C -0.242 4.242 9 N -0.208 5.208 10 C -0.120 4.120 11 C -0.031 4.031 12 C 0.010 3.990 13 C -0.484 4.484 14 H 0.094 0.906 15 C -0.123 4.123 16 N -0.542 5.542 17 Si 0.711 3.289 18 H -0.211 1.211 19 H -0.227 1.227 20 H -0.190 1.190 21 C -0.224 4.224 22 C -0.244 4.244 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.422 -6.113 -8.719 14.219 hybrid contribution 0.319 -0.738 -0.920 1.222 sum -9.104 -6.851 -9.639 14.924 Atomic orbital electron populations 1.23067 0.81650 1.02998 1.00258 1.87985 1.19306 1.30481 1.93984 1.23336 0.94785 0.81386 0.84569 1.88345 1.27987 1.81078 1.29714 1.22948 0.86293 0.98582 0.99399 1.21455 0.92190 0.93755 0.93979 0.88848 1.22428 1.02425 1.01926 0.97447 1.61747 1.01662 1.02800 1.54625 1.22400 0.98731 0.97486 0.93421 1.21823 0.87299 0.99357 0.94623 1.19471 0.91130 0.92490 0.95887 1.19977 1.17647 1.24707 0.86059 0.90574 1.24854 0.96927 0.95429 0.95130 1.69882 1.41427 1.45347 0.97549 0.86902 0.83272 0.81962 0.76758 1.21081 1.22739 1.19045 1.22908 1.05583 0.97632 0.96320 1.22978 0.94122 1.03114 1.04226 0.94277 0.89776 0.93031 0.93276 0.89485 0.94635 0.94196 0.92438 0.91704 0.91855 0.93002 0.90189 0.96813 0.91683 0.97032 0.93091 0.91494 0.89689 0.89352 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.68 101.05 1.08 1.26 16 2 O -0.40 -6.13 10.11 -59.04 -0.60 -6.73 16 3 C 0.26 4.25 1.90 37.16 0.07 4.32 16 4 O -0.35 -6.88 10.36 -59.04 -0.61 -7.49 16 5 C 0.02 0.36 9.68 101.05 0.98 1.34 16 6 C 0.10 1.69 2.36 -67.71 -0.16 1.53 16 7 H 0.09 1.81 7.94 -51.93 -0.41 1.39 16 8 C -0.18 -2.61 8.40 37.16 0.31 -2.30 16 9 N -0.49 -9.81 3.77 -234.89 -0.89 -10.70 16 10 C 0.03 0.49 8.69 60.07 0.52 1.01 16 11 C 0.10 2.02 4.31 -3.83 -0.02 2.00 16 12 C 0.01 0.27 0.36 -155.66 -0.06 0.21 16 13 C -0.45 -12.47 8.76 -34.44 -0.30 -12.77 16 14 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 16 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 17 Si 0.88 22.71 24.79 -169.99 -4.21 18.49 16 18 H -0.28 -7.14 6.90 56.52 0.39 -6.75 16 19 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 20 H -0.27 -6.51 5.85 56.52 0.33 -6.18 16 21 C -0.19 -3.80 9.35 -26.73 -0.25 -4.05 16 22 C -0.21 -4.47 7.46 -26.73 -0.20 -4.67 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.54 4.54 -51.93 -0.24 0.31 16 26 H 0.05 0.75 6.28 -51.93 -0.33 0.42 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.04 0.44 7.79 -51.93 -0.40 0.04 16 29 H 0.04 0.51 6.16 -51.93 -0.32 0.19 16 30 H 0.06 0.76 6.28 -51.93 -0.33 0.43 16 31 H 0.06 0.85 7.83 -51.93 -0.41 0.45 16 32 H 0.06 0.89 6.93 -51.93 -0.36 0.53 16 33 H 0.05 0.86 6.68 -51.93 -0.35 0.52 16 34 H 0.08 1.53 6.82 -51.93 -0.35 1.18 16 35 H 0.01 0.21 6.05 -51.93 -0.31 -0.10 16 36 H 0.06 1.43 6.62 -51.93 -0.34 1.09 16 37 H 0.01 0.22 6.99 -51.93 -0.36 -0.14 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.09 2.03 6.61 -51.93 -0.34 1.69 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -32.09 318.97 -5.88 -37.97 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.03 Total: 1.12 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 1.88 Total: -9.93 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.11 Total: -38.23 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.21 Total: -14.22 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.21 Total: 18.49 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.09 -5.88 -37.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714484906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.948 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds