Wall clock time and date at job start Mon Mar 30 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 113.99851 * 2 1 4 4 C 1.53005 * 109.47169 * 184.57980 * 3 2 1 5 5 N 1.46899 * 109.47112 * 69.83110 * 4 3 2 6 6 C 1.46902 * 110.99913 * 163.18277 * 5 4 3 7 7 H 1.09002 * 109.46567 * 80.65048 * 6 5 4 8 8 C 1.53003 * 109.47102 * 320.65275 * 6 5 4 9 9 C 1.50697 * 109.47283 * 200.65003 * 6 5 4 10 10 H 1.07997 * 120.00016 * 30.76617 * 9 6 5 11 11 C 1.37881 * 120.00174 * 210.77118 * 9 6 5 12 12 N 1.31513 * 119.99451 * 0.15220 * 11 9 6 13 13 Si 1.86796 * 120.00252 * 180.42465 * 11 9 6 14 14 H 1.48502 * 109.47123 * 269.72661 * 13 11 9 15 15 H 1.48504 * 109.46919 * 29.72344 * 13 11 9 16 16 H 1.48491 * 109.47116 * 149.72492 * 13 11 9 17 17 C 1.46899 * 111.00422 * 287.13878 * 5 4 3 18 18 C 1.53178 * 109.54286 * 294.40978 * 17 5 4 19 19 C 1.53104 * 109.15520 * 183.24153 * 18 17 5 20 20 O 1.42905 * 109.49001 * 57.46956 * 19 18 17 21 21 C 1.42900 * 114.09572 * 298.89099 * 20 19 18 22 22 C 1.53095 * 109.41728 * 61.15729 * 21 20 19 23 23 H 1.08998 * 109.47390 * 59.99167 * 1 2 3 24 24 H 1.08994 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47014 * 299.99653 * 1 2 3 26 26 H 1.08999 * 109.47428 * 64.58051 * 3 2 1 27 27 H 1.08998 * 109.47940 * 304.57760 * 3 2 1 28 28 H 1.09006 * 109.46905 * 309.83469 * 4 3 2 29 29 H 1.08999 * 109.47292 * 189.83726 * 4 3 2 30 30 H 1.09005 * 109.46707 * 188.35440 * 8 6 5 31 31 H 1.09002 * 109.47090 * 308.35081 * 8 6 5 32 32 H 1.08995 * 109.47052 * 68.35626 * 8 6 5 33 33 H 0.97001 * 120.00343 * 354.78450 * 12 11 9 34 34 H 1.09006 * 109.53978 * 54.58587 * 17 5 4 35 35 H 1.09000 * 109.51625 * 303.05145 * 18 17 5 36 36 H 1.08998 * 109.52411 * 63.24564 * 18 17 5 37 37 H 1.09006 * 109.40085 * 297.49042 * 19 18 17 38 38 H 1.08999 * 109.48231 * 177.50355 * 19 18 17 39 39 H 1.09001 * 109.48472 * 301.16908 * 21 20 19 40 40 H 1.09006 * 109.49043 * 181.14327 * 21 20 19 41 41 H 1.09003 * 109.52018 * 182.48355 * 22 21 20 42 42 H 1.08996 * 109.57250 * 62.32518 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5313 1.1865 -0.1152 5 7 3.8851 0.7149 -1.4607 6 6 5.3041 0.9622 -1.7490 7 1 5.9098 0.1820 -1.2881 8 6 5.7098 2.3243 -1.1823 9 6 5.5228 0.9531 -3.2400 10 1 4.7338 1.2752 -3.9034 11 6 6.7301 0.5336 -3.7572 12 7 7.6898 0.1386 -2.9493 13 14 7.0054 0.5335 -5.6047 14 1 6.5980 -0.7796 -6.1659 15 1 6.1936 1.6107 -6.2261 16 1 8.4432 0.7696 -5.8910 17 6 3.5548 -0.7072 -1.6239 18 6 4.4325 -1.5474 -0.6910 19 6 4.1387 -3.0314 -0.9263 20 8 4.3706 -3.3515 -2.2996 21 6 3.5429 -2.6305 -3.2145 22 6 3.8144 -1.1305 -3.0729 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7550 1.8168 0.9282 27 1 1.6252 1.8746 -0.8461 28 1 3.8974 0.4767 0.6266 29 1 3.9862 2.1615 0.0594 30 1 6.7150 2.5742 -1.5217 31 1 5.0099 3.0849 -1.5284 32 1 5.6935 2.2842 -0.0932 33 1 7.5767 0.2133 -1.9888 34 1 2.5047 -0.8680 -1.3795 35 1 5.4831 -1.3475 -0.9016 36 1 4.2124 -1.2909 0.3452 37 1 3.0984 -3.2388 -0.6754 38 1 4.7920 -3.6356 -0.2968 39 1 2.4948 -2.8327 -2.9936 40 1 3.7669 -2.9457 -4.2337 41 1 3.1526 -0.5761 -3.7384 42 1 4.8518 -0.9210 -3.3333 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716502954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:33 Heat of formation + Delta-G solvation = -79.025146 kcal Electronic energy + Delta-G solvation = -21672.096943 eV Core-core repulsion = 18652.881138 eV Total energy + Delta-G solvation = -3019.215805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.37720 -37.69809 -36.48816 -33.10638 -31.78686 -30.35905 -29.75491 -27.48456 -26.14166 -24.85640 -23.15632 -22.75239 -21.87547 -20.34428 -18.44923 -16.68577 -16.37528 -15.89331 -15.58592 -15.27807 -14.78117 -14.46186 -14.14448 -13.92413 -13.68326 -13.29607 -13.14768 -12.72426 -12.02069 -11.86699 -11.55799 -11.33082 -11.16662 -11.09207 -10.91179 -10.87606 -10.49660 -10.45590 -10.14045 -10.09849 -10.09063 -9.79067 -9.62056 -9.01444 -8.88118 -8.47075 -8.22868 -7.10773 -6.26535 -3.93016 3.47293 3.49368 3.64833 4.01969 4.49187 4.54094 4.83798 5.28529 5.40039 5.41233 5.49684 5.57207 5.59635 5.65650 5.68822 5.73558 5.75388 5.85844 6.04215 6.06187 6.16362 6.19968 6.30275 6.36937 6.40177 6.53528 6.61950 6.65404 6.86479 6.86890 7.00552 7.20415 7.37061 7.40133 7.72114 7.85794 8.07000 8.14856 8.44196 8.68200 8.93123 9.68404 11.07061 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.008933 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.542032 B = 3133.570673 C = 3851.237745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.068 3.932 4 C 0.038 3.962 5 N -0.519 5.519 6 C 0.181 3.819 7 H 0.022 0.978 8 C -0.139 4.139 9 C -0.560 4.560 10 H 0.056 0.944 11 C 0.017 3.983 12 N -0.912 5.912 13 Si 1.063 2.937 14 H -0.287 1.287 15 H -0.288 1.288 16 H -0.286 1.286 17 C 0.099 3.901 18 C -0.188 4.188 19 C 0.073 3.927 20 O -0.386 6.386 21 C 0.062 3.938 22 C -0.163 4.163 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.018 0.982 33 H 0.268 0.732 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -0.924 5.256 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.009 4.009 4 C -0.090 4.090 5 N -0.242 5.242 6 C 0.075 3.925 7 H 0.039 0.961 8 C -0.197 4.197 9 C -0.599 4.599 10 H 0.074 0.926 11 C -0.188 4.188 12 N -0.548 5.548 13 Si 0.892 3.108 14 H -0.213 1.213 15 H -0.215 1.215 16 H -0.212 1.212 17 C -0.010 4.010 18 C -0.227 4.227 19 C -0.004 4.004 20 O -0.304 6.304 21 C -0.015 4.015 22 C -0.200 4.200 23 H 0.057 0.943 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.113 -1.333 3.670 10.840 hybrid contribution -1.125 0.515 1.992 2.346 sum -11.238 -0.818 5.662 12.611 Atomic orbital electron populations 1.22667 0.82380 1.02088 0.99486 1.87962 1.18638 1.28582 1.94972 1.22694 0.94816 0.84286 0.99101 1.22368 0.92604 1.01273 0.92793 1.62482 1.23202 1.16254 1.22307 1.19660 0.83267 0.92367 0.97176 0.96093 1.22123 1.01017 1.00395 0.96203 1.21756 1.00927 1.46453 0.90803 0.92566 1.25719 0.92660 0.93830 1.06543 1.70768 1.34784 1.44091 1.05190 0.83623 0.75932 0.76534 0.74734 1.21318 1.21462 1.21228 1.21667 0.98378 0.86517 0.94407 1.22840 1.03218 0.96306 1.00303 1.22350 0.99237 0.95531 0.83295 1.87872 1.62687 1.64322 1.15566 1.22667 0.92486 0.93460 0.92881 1.22820 1.08329 0.92579 0.96291 0.94261 0.90264 0.94772 0.94167 0.92640 0.94846 0.89166 0.93104 0.93661 0.96327 0.92050 0.89591 0.90305 0.92263 0.94215 0.90237 0.95000 0.89806 0.91996 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.94 7.82 -35.23 -0.28 -6.22 16 3 C 0.07 1.03 6.19 37.16 0.23 1.26 16 4 C 0.04 0.68 4.90 -3.82 -0.02 0.66 16 5 N -0.52 -10.91 4.38 -219.88 -0.96 -11.87 16 6 C 0.18 4.31 1.71 -68.86 -0.12 4.20 16 7 H 0.02 0.56 3.89 -51.93 -0.20 0.36 16 8 C -0.14 -3.06 7.90 37.16 0.29 -2.76 16 9 C -0.56 -14.73 5.12 -34.44 -0.18 -14.91 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.02 0.45 4.86 -17.82 -0.09 0.37 16 12 N -0.91 -26.59 13.60 55.43 0.75 -25.84 16 13 Si 1.06 24.91 29.90 -169.99 -5.08 19.83 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.10 2.01 2.07 -67.53 -0.14 1.87 16 18 C -0.19 -3.72 4.83 -26.59 -0.13 -3.85 16 19 C 0.07 1.33 6.84 37.21 0.25 1.58 16 20 O -0.39 -7.89 10.77 -35.23 -0.38 -8.27 16 21 C 0.06 1.17 6.84 37.21 0.25 1.43 16 22 C -0.16 -3.49 4.51 -26.59 -0.12 -3.61 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.03 0.61 6.05 -51.93 -0.31 0.30 16 29 H 0.09 1.56 5.26 -51.93 -0.27 1.29 16 30 H 0.05 1.20 8.12 -51.93 -0.42 0.77 16 31 H 0.04 0.96 8.02 -51.93 -0.42 0.54 16 32 H 0.02 0.35 6.66 -51.93 -0.35 0.01 16 33 H 0.27 7.83 6.63 -40.82 -0.27 7.56 16 34 H 0.09 1.70 5.24 -51.93 -0.27 1.42 16 35 H 0.08 1.84 5.91 -51.93 -0.31 1.53 16 36 H 0.06 1.11 6.46 -51.93 -0.34 0.77 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.13 3.31 4.52 -51.93 -0.23 3.08 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -29.06 310.51 -6.73 -35.80 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.82 Total: 4.19 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 1.36 Total: -12.30 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.21 Total: -37.71 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.65 Total: -14.49 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.06 -6.73 -35.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716502954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.230 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds