Wall clock time and date at job start Mon Mar 30 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 113.99851 * 2 1 4 4 C 1.53005 * 109.47169 * 184.57980 * 3 2 1 5 5 N 1.46899 * 109.47112 * 69.83110 * 4 3 2 6 6 C 1.46902 * 110.99913 * 163.18277 * 5 4 3 7 7 H 1.09002 * 109.46567 * 80.65048 * 6 5 4 8 8 C 1.53003 * 109.47102 * 320.65275 * 6 5 4 9 9 C 1.50697 * 109.47283 * 200.65003 * 6 5 4 10 10 H 1.07997 * 120.00016 * 30.76617 * 9 6 5 11 11 C 1.37881 * 120.00174 * 210.77118 * 9 6 5 12 12 N 1.31513 * 119.99451 * 0.15220 * 11 9 6 13 13 Si 1.86796 * 120.00252 * 180.42465 * 11 9 6 14 14 H 1.48502 * 109.47123 * 269.72661 * 13 11 9 15 15 H 1.48504 * 109.46919 * 29.72344 * 13 11 9 16 16 H 1.48491 * 109.47116 * 149.72492 * 13 11 9 17 17 C 1.46899 * 111.00422 * 287.13878 * 5 4 3 18 18 C 1.53178 * 109.54286 * 294.40978 * 17 5 4 19 19 C 1.53104 * 109.15520 * 183.24153 * 18 17 5 20 20 O 1.42905 * 109.49001 * 57.46956 * 19 18 17 21 21 C 1.42900 * 114.09572 * 298.89099 * 20 19 18 22 22 C 1.53095 * 109.41728 * 61.15729 * 21 20 19 23 23 H 1.08998 * 109.47390 * 59.99167 * 1 2 3 24 24 H 1.08994 * 109.47208 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47014 * 299.99653 * 1 2 3 26 26 H 1.08999 * 109.47428 * 64.58051 * 3 2 1 27 27 H 1.08998 * 109.47940 * 304.57760 * 3 2 1 28 28 H 1.09006 * 109.46905 * 309.83469 * 4 3 2 29 29 H 1.08999 * 109.47292 * 189.83726 * 4 3 2 30 30 H 1.09005 * 109.46707 * 188.35440 * 8 6 5 31 31 H 1.09002 * 109.47090 * 308.35081 * 8 6 5 32 32 H 1.08995 * 109.47052 * 68.35626 * 8 6 5 33 33 H 0.97001 * 120.00343 * 354.78450 * 12 11 9 34 34 H 1.09006 * 109.53978 * 54.58587 * 17 5 4 35 35 H 1.09000 * 109.51625 * 303.05145 * 18 17 5 36 36 H 1.08998 * 109.52411 * 63.24564 * 18 17 5 37 37 H 1.09006 * 109.40085 * 297.49042 * 19 18 17 38 38 H 1.08999 * 109.48231 * 177.50355 * 19 18 17 39 39 H 1.09001 * 109.48472 * 301.16908 * 21 20 19 40 40 H 1.09006 * 109.49043 * 181.14327 * 21 20 19 41 41 H 1.09003 * 109.52018 * 182.48355 * 22 21 20 42 42 H 1.08996 * 109.57250 * 62.32518 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5313 1.1865 -0.1152 5 7 3.8851 0.7149 -1.4607 6 6 5.3041 0.9622 -1.7490 7 1 5.9098 0.1820 -1.2881 8 6 5.7098 2.3243 -1.1823 9 6 5.5228 0.9531 -3.2400 10 1 4.7338 1.2752 -3.9034 11 6 6.7301 0.5336 -3.7572 12 7 7.6898 0.1386 -2.9493 13 14 7.0054 0.5335 -5.6047 14 1 6.5980 -0.7796 -6.1659 15 1 6.1936 1.6107 -6.2261 16 1 8.4432 0.7696 -5.8910 17 6 3.5548 -0.7072 -1.6239 18 6 4.4325 -1.5474 -0.6910 19 6 4.1387 -3.0314 -0.9263 20 8 4.3706 -3.3515 -2.2996 21 6 3.5429 -2.6305 -3.2145 22 6 3.8144 -1.1305 -3.0729 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7550 1.8168 0.9282 27 1 1.6252 1.8746 -0.8461 28 1 3.8974 0.4767 0.6266 29 1 3.9862 2.1615 0.0594 30 1 6.7150 2.5742 -1.5217 31 1 5.0099 3.0849 -1.5284 32 1 5.6935 2.2842 -0.0932 33 1 7.5767 0.2133 -1.9888 34 1 2.5047 -0.8680 -1.3795 35 1 5.4831 -1.3475 -0.9016 36 1 4.2124 -1.2909 0.3452 37 1 3.0984 -3.2388 -0.6754 38 1 4.7920 -3.6356 -0.2968 39 1 2.4948 -2.8327 -2.9936 40 1 3.7669 -2.9457 -4.2337 41 1 3.1526 -0.5761 -3.7384 42 1 4.8518 -0.9210 -3.3333 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716502954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:32 Heat of formation + Delta-G solvation = -99.061882 kcal Electronic energy + Delta-G solvation = -21672.965801 eV Core-core repulsion = 18652.881138 eV Total energy + Delta-G solvation = -3020.084663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95821 -38.98640 -37.98860 -35.03446 -33.39702 -31.93988 -31.36162 -29.02385 -27.33804 -26.64815 -24.68372 -24.33144 -23.52655 -21.95324 -20.14531 -18.57196 -17.70094 -17.19032 -17.00600 -16.81205 -16.21895 -16.02551 -15.64463 -15.53608 -15.40232 -14.93816 -14.67334 -14.19919 -13.54452 -13.38089 -13.16297 -12.86758 -12.76500 -12.73659 -12.63349 -12.29665 -12.17188 -12.04972 -11.94647 -11.75009 -11.70754 -11.42065 -11.02467 -10.59718 -10.47019 -10.27855 -10.20231 -8.86048 -8.38709 -6.06836 1.54628 1.61668 1.77832 2.60909 2.93523 3.02503 3.19591 3.42635 3.99354 4.04036 4.16899 4.20351 4.35830 4.38783 4.40118 4.50518 4.56923 4.57850 4.60494 4.63183 4.68320 4.75389 4.79024 4.82917 4.86937 4.89528 4.95720 4.98946 5.16217 5.23607 5.27682 5.46667 5.57147 5.94404 6.14226 6.19628 6.32599 6.34749 6.63378 6.65392 6.89309 7.60252 8.91565 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.008933 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.542032 B = 3133.570673 C = 3851.237745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.076 3.924 4 C 0.036 3.964 5 N -0.526 5.526 6 C 0.183 3.817 7 H -0.005 1.005 8 C -0.129 4.129 9 C -0.548 4.548 10 H 0.043 0.957 11 C -0.029 4.029 12 N -0.943 5.943 13 Si 1.099 2.901 14 H -0.279 1.279 15 H -0.272 1.272 16 H -0.290 1.290 17 C 0.102 3.898 18 C -0.178 4.178 19 C 0.072 3.928 20 O -0.407 6.407 21 C 0.064 3.936 22 C -0.162 4.162 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.029 0.971 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.255 0.745 34 H 0.102 0.898 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.581 -1.075 5.827 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.001 4.001 4 C -0.092 4.092 5 N -0.250 5.250 6 C 0.076 3.924 7 H 0.012 0.988 8 C -0.187 4.187 9 C -0.587 4.587 10 H 0.061 0.939 11 C -0.227 4.227 12 N -0.582 5.582 13 Si 0.923 3.077 14 H -0.205 1.205 15 H -0.197 1.197 16 H -0.216 1.216 17 C -0.006 4.006 18 C -0.217 4.217 19 C -0.005 4.005 20 O -0.327 6.327 21 C -0.012 4.012 22 C -0.200 4.200 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.112 0.888 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.545 -1.475 4.249 13.327 hybrid contribution -0.486 0.567 1.881 2.024 sum -13.032 -0.908 6.130 14.430 Atomic orbital electron populations 1.22861 0.80199 1.03407 1.00520 1.87878 1.20950 1.28600 1.95169 1.22554 0.92530 0.84583 1.00422 1.22462 0.95022 1.01056 0.90704 1.62406 1.20873 1.17017 1.24661 1.19499 0.84840 0.92408 0.95679 0.98788 1.21956 0.99616 0.99384 0.97721 1.21880 0.99975 1.44735 0.92136 0.93866 1.26780 0.92846 0.93650 1.09376 1.70873 1.35884 1.46813 1.04618 0.83154 0.75828 0.77367 0.71315 1.20463 1.19654 1.21588 1.21685 0.99053 0.86165 0.93703 1.22718 1.00384 0.97865 1.00763 1.22500 1.01194 0.94253 0.82522 1.87848 1.63590 1.64488 1.16757 1.22697 0.93899 0.91357 0.93295 1.22661 1.05417 0.94785 0.97122 0.93995 0.88894 0.92942 0.91241 0.93042 0.95267 0.88798 0.95498 0.92877 0.93870 0.93438 0.88057 0.94595 0.91129 0.91536 0.88792 0.92011 0.89057 0.92298 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -11.33 7.82 -148.98 -1.16 -12.49 16 3 C 0.08 2.09 6.19 71.98 0.45 2.53 16 4 C 0.04 1.21 4.90 86.31 0.42 1.63 16 5 N -0.53 -21.82 4.38 -849.55 -3.72 -25.55 16 6 C 0.18 8.86 1.71 44.17 0.08 8.93 16 7 H -0.01 -0.29 3.89 -2.39 -0.01 -0.30 16 8 C -0.13 -5.68 7.90 71.98 0.57 -5.11 16 9 C -0.55 -29.46 5.12 25.60 0.13 -29.33 16 10 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 11 C -0.03 -1.60 4.86 84.66 0.41 -1.19 16 12 N -0.94 -57.12 13.60 21.45 0.29 -56.82 16 13 Si 1.10 50.98 29.90 68.60 2.05 53.03 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 17 C 0.10 4.05 2.07 45.03 0.09 4.15 16 18 C -0.18 -6.99 4.83 30.69 0.15 -6.85 16 19 C 0.07 2.49 6.84 72.02 0.49 2.98 16 20 O -0.41 -16.21 10.77 -148.98 -1.60 -17.82 16 21 C 0.06 2.33 6.84 72.01 0.49 2.83 16 22 C -0.16 -6.90 4.51 30.68 0.14 -6.77 16 23 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.03 1.02 6.05 -2.38 -0.01 1.01 16 29 H 0.09 3.08 5.26 -2.39 -0.01 3.07 16 30 H 0.03 1.27 8.12 -2.38 -0.02 1.26 16 31 H 0.05 2.21 8.02 -2.39 -0.02 2.19 16 32 H 0.04 1.66 6.66 -2.39 -0.02 1.64 16 33 H 0.26 15.68 6.63 -92.71 -0.61 15.07 16 34 H 0.10 3.76 5.24 -2.38 -0.01 3.75 16 35 H 0.04 1.73 5.91 -2.39 -0.01 1.71 16 36 H 0.07 2.56 6.46 -2.39 -0.02 2.55 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.94 16 38 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.09 4.58 4.52 -2.39 -0.01 4.57 16 Total: -1.00 -64.07 310.51 1.67 -62.41 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.15 Total: 21.66 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.67 Total: -24.42 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -3.43 Total: -82.37 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -2.77 Total: -30.31 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.03 kcal Total: -64.07 1.67 -62.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716502954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.656 kcal (2) G-P(sol) polarization free energy of solvation -64.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds