Wall clock time and date at job start Mon Mar 30 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47051 * 2 1 4 4 C 1.53000 * 109.47256 * 239.99999 * 2 1 3 5 5 N 1.46903 * 109.47338 * 64.99802 * 4 2 1 6 6 C 1.46896 * 110.99948 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47035 * 180.02562 * 6 5 4 8 8 O 1.42905 * 109.47079 * 64.99813 * 7 6 5 9 9 C 1.42899 * 113.99778 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47163 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00089 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00281 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99721 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00202 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46881 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46827 * 119.99902 * 14 12 10 17 17 H 1.48498 * 109.47252 * 240.00324 * 14 12 10 18 18 C 1.52995 * 109.46968 * 120.00100 * 2 1 3 19 19 H 1.08993 * 110.33842 * 60.70553 * 18 2 1 20 20 C 1.54476 * 110.37127 * 298.45021 * 18 2 1 21 21 C 1.54511 * 104.06673 * 217.19265 * 20 18 2 22 22 C 1.54482 * 104.06026 * 0.02562 * 21 20 18 23 23 O 1.44426 * 110.37304 * 182.95468 * 18 2 1 24 24 H 1.09009 * 109.46682 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47591 * 299.99745 * 1 2 3 26 26 H 1.09003 * 109.47167 * 60.00398 * 1 2 3 27 27 H 1.09004 * 109.47457 * 304.99898 * 4 2 1 28 28 H 1.09001 * 109.47125 * 185.00097 * 4 2 1 29 29 H 1.00892 * 111.00039 * 303.95867 * 5 4 2 30 30 H 1.08997 * 109.47137 * 60.00445 * 6 5 4 31 31 H 1.09005 * 109.47283 * 299.99974 * 6 5 4 32 32 H 1.09004 * 109.46930 * 305.00039 * 7 6 5 33 33 H 1.09000 * 109.47312 * 184.99983 * 7 6 5 34 34 H 1.08997 * 109.47442 * 300.00036 * 9 8 7 35 35 H 1.08997 * 109.47171 * 60.00232 * 9 8 7 36 36 H 0.97007 * 119.99648 * 180.02562 * 13 12 10 37 37 H 1.08999 * 110.51362 * 335.83711 * 20 18 2 38 38 H 1.08997 * 110.51482 * 98.54522 * 20 18 2 39 39 H 1.08998 * 110.51480 * 118.64282 * 21 20 18 40 40 H 1.09000 * 110.51187 * 241.21864 * 21 20 18 41 41 H 1.08999 * 110.37563 * 142.81500 * 22 21 20 42 42 H 1.09000 * 110.37240 * 265.14809 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6514 0.0374 -2.4457 6 6 2.1258 -0.6266 -3.6671 7 6 1.7035 0.1914 -4.8892 8 8 2.3647 1.4581 -4.8662 9 6 2.0374 2.3047 -5.9699 10 6 2.7873 3.6059 -5.8446 11 1 3.4481 3.7698 -5.0062 12 6 2.6306 4.5867 -6.8009 13 7 1.8263 4.3869 -7.8220 14 14 3.5596 6.1999 -6.6452 15 1 4.3919 6.1750 -5.4156 16 1 4.4344 6.3836 -7.8310 17 1 2.5914 7.3230 -6.5655 18 6 2.0399 -0.7213 1.2492 19 1 1.6947 -1.7550 1.2572 20 6 1.5687 0.0129 2.5240 21 6 2.7649 -0.1131 3.4939 22 6 3.8177 -0.9081 2.6899 23 8 3.4823 -0.6725 1.3043 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -1.7198 -1.2952 28 1 3.1263 -0.7995 -1.2055 29 1 0.6529 0.1793 -2.4753 30 1 1.6922 -1.6246 -3.7300 31 1 3.2128 -0.7037 -3.6400 32 1 0.6244 0.3444 -4.8687 33 1 1.9773 -0.3449 -5.7977 34 1 2.3177 1.8124 -6.9011 35 1 0.9653 2.5015 -5.9714 36 1 1.7164 5.0769 -8.4950 37 1 1.3619 1.0609 2.3069 38 1 0.6865 -0.4730 2.9406 39 1 3.1496 0.8724 3.7561 40 1 2.4734 -0.6594 4.3909 41 1 4.8197 -0.5381 2.9070 42 1 3.7469 -1.9713 2.9194 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720535700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:52 Heat of formation + Delta-G solvation = -110.012891 kcal Electronic energy + Delta-G solvation = -19193.730079 eV Core-core repulsion = 16173.170544 eV Total energy + Delta-G solvation = -3020.559535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80848 -37.31256 -36.09200 -33.57068 -32.54647 -32.12541 -29.05990 -27.86956 -26.73927 -25.24202 -22.92470 -22.22031 -21.46742 -21.30049 -20.12612 -16.71320 -16.39632 -16.12920 -16.00555 -15.63537 -15.15667 -14.92030 -14.24451 -13.96211 -13.79416 -13.64508 -13.34022 -12.98121 -12.66104 -12.24949 -12.21930 -11.92823 -11.75464 -11.55191 -11.22504 -11.19066 -10.91242 -10.79958 -10.75233 -10.69559 -10.59449 -10.28133 -9.90630 -9.87246 -8.99026 -8.72947 -8.09552 -8.03464 -6.03368 -4.03801 3.34859 3.40921 3.48856 3.68387 4.19071 4.40286 4.42627 4.61078 4.68473 4.83916 4.92750 5.00072 5.04295 5.10805 5.21254 5.33201 5.42043 5.46458 5.53397 5.53967 5.58550 5.66848 5.69169 5.73390 5.78462 5.87961 5.99516 6.06998 6.15952 6.23432 6.27351 6.39978 6.71892 7.18871 7.30591 7.52217 7.67615 7.89606 8.25629 8.71180 9.11967 9.60925 11.08463 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023994 B = 0.003469 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.689228 B = 8068.665588 C = 8660.499691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 H 0.091 0.909 4 C 0.068 3.932 5 N -0.676 5.676 6 C 0.066 3.934 7 C 0.065 3.935 8 O -0.380 6.380 9 C 0.193 3.807 10 C -0.508 4.508 11 H 0.068 0.932 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.081 3.919 19 H 0.065 0.935 20 C -0.149 4.149 21 C -0.156 4.156 22 C 0.043 3.957 23 O -0.366 6.366 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.020 0.980 28 H 0.078 0.922 29 H 0.336 0.664 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.002 0.998 35 H 0.003 0.997 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 -13.173 20.641 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.109 0.891 4 C -0.061 4.061 5 N -0.308 5.308 6 C -0.064 4.064 7 C -0.013 4.013 8 O -0.299 6.299 9 C 0.118 3.882 10 C -0.547 4.547 11 H 0.086 0.914 12 C -0.147 4.147 13 N -0.541 5.541 14 Si 0.734 3.266 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.209 1.209 18 C 0.023 3.977 19 H 0.083 0.917 20 C -0.187 4.187 21 C -0.194 4.194 22 C -0.034 4.034 23 O -0.285 6.285 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.097 0.903 29 H 0.155 0.845 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.662 -12.563 20.468 24.074 hybrid contribution -0.583 -0.063 -0.154 0.606 sum -2.245 -12.626 20.315 24.024 Atomic orbital electron populations 1.21847 0.94544 1.01634 1.02640 1.21200 0.95451 1.01268 0.92446 0.89050 1.21925 1.01348 0.93506 0.89364 1.60318 1.19289 1.50188 1.01000 1.21965 1.01398 0.93668 0.89325 1.22233 0.95795 0.87761 0.95499 1.87968 1.67837 1.24949 1.49144 1.20186 0.95335 0.88892 0.83755 1.21127 1.26103 0.98565 1.08861 0.91420 1.24955 0.95707 0.99012 0.94996 1.69984 1.37476 1.34521 1.12132 0.86292 0.79514 0.82624 0.78150 1.19424 1.20934 1.20906 1.23028 0.81356 0.98375 0.94956 0.91715 1.22993 0.98244 1.02263 0.95208 1.22945 0.96081 1.01571 0.98828 1.23387 0.99230 0.98799 0.81950 1.89216 1.20854 1.93037 1.25378 0.92967 0.92299 0.91420 0.96183 0.90312 0.84483 0.95046 0.90383 0.94900 0.94252 0.98024 0.97924 0.92846 0.90215 0.90702 0.90645 0.90791 0.89176 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.75 37.16 0.33 -1.09 16 2 C -0.08 -0.97 2.27 -90.62 -0.21 -1.18 16 3 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 4 C 0.07 0.89 5.09 -3.82 -0.02 0.88 16 5 N -0.68 -10.62 6.45 -113.78 -0.73 -11.35 16 6 C 0.07 1.05 6.07 -3.82 -0.02 1.03 16 7 C 0.07 1.27 6.22 37.16 0.23 1.50 16 8 O -0.38 -9.67 10.27 -35.23 -0.36 -10.03 16 9 C 0.19 5.51 5.69 36.00 0.20 5.71 16 10 C -0.51 -15.55 9.43 -34.44 -0.32 -15.88 16 11 H 0.07 2.08 7.81 -52.48 -0.41 1.67 16 12 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 14 Si 0.91 22.49 29.54 -169.99 -5.02 17.47 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C 0.08 0.82 2.80 -25.96 -0.07 0.75 16 19 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 20 C -0.15 -1.22 5.57 -25.16 -0.14 -1.36 16 21 C -0.16 -1.16 7.09 -25.16 -0.18 -1.34 16 22 C 0.04 0.38 7.63 37.93 0.29 0.67 16 23 O -0.37 -4.48 10.77 -35.23 -0.38 -4.86 16 24 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 25 H 0.06 0.49 7.21 -51.93 -0.37 0.11 16 26 H 0.07 0.70 6.68 -51.93 -0.35 0.35 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 1.17 7.67 -51.93 -0.40 0.77 16 29 H 0.34 4.86 6.98 -39.30 -0.27 4.59 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 35 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -33.26 338.25 -8.36 -41.62 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.68 Total: -2.21 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.01 Total: -8.81 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.00 Total: -38.28 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.74 Total: -14.89 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.26 -8.36 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720535700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.393 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds