Wall clock time and date at job start Mon Mar 30 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47051 * 2 1 4 4 C 1.53000 * 109.47256 * 239.99999 * 2 1 3 5 5 N 1.46903 * 109.47338 * 64.99802 * 4 2 1 6 6 C 1.46896 * 110.99948 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47035 * 180.02562 * 6 5 4 8 8 O 1.42905 * 109.47079 * 64.99813 * 7 6 5 9 9 C 1.42899 * 113.99778 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47163 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00089 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00281 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99721 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00202 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46881 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46827 * 119.99902 * 14 12 10 17 17 H 1.48498 * 109.47252 * 240.00324 * 14 12 10 18 18 C 1.52995 * 109.46968 * 120.00100 * 2 1 3 19 19 H 1.08993 * 110.33842 * 60.70553 * 18 2 1 20 20 C 1.54476 * 110.37127 * 298.45021 * 18 2 1 21 21 C 1.54511 * 104.06673 * 217.19265 * 20 18 2 22 22 C 1.54482 * 104.06026 * 0.02562 * 21 20 18 23 23 O 1.44426 * 110.37304 * 182.95468 * 18 2 1 24 24 H 1.09009 * 109.46682 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47591 * 299.99745 * 1 2 3 26 26 H 1.09003 * 109.47167 * 60.00398 * 1 2 3 27 27 H 1.09004 * 109.47457 * 304.99898 * 4 2 1 28 28 H 1.09001 * 109.47125 * 185.00097 * 4 2 1 29 29 H 1.00892 * 111.00039 * 303.95867 * 5 4 2 30 30 H 1.08997 * 109.47137 * 60.00445 * 6 5 4 31 31 H 1.09005 * 109.47283 * 299.99974 * 6 5 4 32 32 H 1.09004 * 109.46930 * 305.00039 * 7 6 5 33 33 H 1.09000 * 109.47312 * 184.99983 * 7 6 5 34 34 H 1.08997 * 109.47442 * 300.00036 * 9 8 7 35 35 H 1.08997 * 109.47171 * 60.00232 * 9 8 7 36 36 H 0.97007 * 119.99648 * 180.02562 * 13 12 10 37 37 H 1.08999 * 110.51362 * 335.83711 * 20 18 2 38 38 H 1.08997 * 110.51482 * 98.54522 * 20 18 2 39 39 H 1.08998 * 110.51480 * 118.64282 * 21 20 18 40 40 H 1.09000 * 110.51187 * 241.21864 * 21 20 18 41 41 H 1.08999 * 110.37563 * 142.81500 * 22 21 20 42 42 H 1.09000 * 110.37240 * 265.14809 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6514 0.0374 -2.4457 6 6 2.1258 -0.6266 -3.6671 7 6 1.7035 0.1914 -4.8892 8 8 2.3647 1.4581 -4.8662 9 6 2.0374 2.3047 -5.9699 10 6 2.7873 3.6059 -5.8446 11 1 3.4481 3.7698 -5.0062 12 6 2.6306 4.5867 -6.8009 13 7 1.8263 4.3869 -7.8220 14 14 3.5596 6.1999 -6.6452 15 1 4.3919 6.1750 -5.4156 16 1 4.4344 6.3836 -7.8310 17 1 2.5914 7.3230 -6.5655 18 6 2.0399 -0.7213 1.2492 19 1 1.6947 -1.7550 1.2572 20 6 1.5687 0.0129 2.5240 21 6 2.7649 -0.1131 3.4939 22 6 3.8177 -0.9081 2.6899 23 8 3.4823 -0.6725 1.3043 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -1.7198 -1.2952 28 1 3.1263 -0.7995 -1.2055 29 1 0.6529 0.1793 -2.4753 30 1 1.6922 -1.6246 -3.7300 31 1 3.2128 -0.7037 -3.6400 32 1 0.6244 0.3444 -4.8687 33 1 1.9773 -0.3449 -5.7977 34 1 2.3177 1.8124 -6.9011 35 1 0.9653 2.5015 -5.9714 36 1 1.7164 5.0769 -8.4950 37 1 1.3619 1.0609 2.3069 38 1 0.6865 -0.4730 2.9406 39 1 3.1496 0.8724 3.7561 40 1 2.4734 -0.6594 4.3909 41 1 4.8197 -0.5381 2.9070 42 1 3.7469 -1.9713 2.9194 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720535700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:52 Heat of formation + Delta-G solvation = -133.661182 kcal Electronic energy + Delta-G solvation = -19194.755546 eV Core-core repulsion = 16173.170544 eV Total energy + Delta-G solvation = -3021.585001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57742 -38.87981 -37.51038 -35.08183 -34.38750 -32.87867 -30.51481 -28.99155 -28.42223 -26.32798 -24.48207 -23.74047 -22.81841 -22.08431 -20.98969 -18.64082 -17.69088 -17.41620 -17.04307 -16.77297 -16.55539 -16.38522 -16.00642 -15.18866 -15.04481 -14.67970 -14.50778 -14.26820 -13.84171 -13.60734 -13.46459 -13.02883 -12.91981 -12.79163 -12.62925 -12.57905 -12.31439 -12.21615 -12.03356 -11.88322 -11.76922 -11.43989 -11.30103 -11.22172 -10.86083 -10.66799 -10.18741 -9.25058 -8.31670 -6.43457 1.39706 1.41498 1.56731 2.36002 2.97735 3.01726 3.13790 3.25408 3.73235 3.81280 4.02993 4.06197 4.10019 4.22449 4.26600 4.29060 4.41395 4.48464 4.55806 4.62989 4.65252 4.76120 4.81525 4.83790 4.85107 4.94491 4.97998 4.99217 5.05989 5.14963 5.19395 5.20444 5.35021 5.37816 5.56460 5.98025 5.99523 6.13007 6.50803 6.59274 6.87590 7.28904 8.81008 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023994 B = 0.003469 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.689228 B = 8068.665588 C = 8660.499691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.061 0.939 4 C 0.073 3.927 5 N -0.700 5.700 6 C 0.075 3.925 7 C 0.055 3.945 8 O -0.398 6.398 9 C 0.208 3.792 10 C -0.546 4.546 11 H 0.058 0.942 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.267 1.267 16 H -0.270 1.270 17 H -0.269 1.269 18 C 0.080 3.920 19 H 0.078 0.922 20 C -0.147 4.147 21 C -0.153 4.153 22 C 0.035 3.965 23 O -0.402 6.402 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.343 0.657 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.049 0.951 34 H -0.016 1.016 35 H -0.015 1.015 36 H 0.271 0.729 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 -13.435 22.019 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.055 4.055 5 N -0.333 5.333 6 C -0.054 4.054 7 C -0.022 4.022 8 O -0.318 6.318 9 C 0.133 3.867 10 C -0.584 4.584 11 H 0.076 0.924 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.806 3.194 15 H -0.191 1.191 16 H -0.195 1.195 17 H -0.194 1.194 18 C 0.022 3.978 19 H 0.096 0.904 20 C -0.185 4.185 21 C -0.190 4.190 22 C -0.041 4.041 23 O -0.322 6.322 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.002 0.998 35 H 0.003 0.997 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.017 -12.851 21.858 25.436 hybrid contribution -0.496 -0.069 -0.582 0.768 sum -2.513 -12.921 21.276 25.018 Atomic orbital electron populations 1.21800 0.92778 1.02748 1.02750 1.21147 0.96881 0.99471 0.92545 0.92091 1.21879 1.00135 0.94454 0.89071 1.60263 1.19931 1.51446 1.01663 1.21868 1.00909 0.94574 0.88081 1.22601 0.96059 0.85674 0.97865 1.87923 1.68858 1.27165 1.47873 1.19810 0.93863 0.89041 0.84007 1.21416 1.27260 1.00244 1.09485 0.92420 1.25966 0.96285 1.02912 0.94094 1.70077 1.38161 1.36138 1.12673 0.85130 0.78292 0.77380 0.78551 1.19105 1.19472 1.19428 1.23103 0.80675 0.99071 0.94975 0.90402 1.22998 0.99350 1.01683 0.94486 1.22950 0.95255 1.01603 0.99238 1.23596 0.99895 0.99965 0.80656 1.89183 1.22107 1.93357 1.27546 0.91273 0.90964 0.92565 0.94153 0.92515 0.83744 0.91324 0.91552 0.94023 0.93306 0.99792 0.99740 0.92029 0.91141 0.88544 0.90922 0.88545 0.88896 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.75 71.98 0.63 -1.87 16 2 C -0.08 -1.84 2.27 -10.80 -0.02 -1.86 16 3 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 4 C 0.07 1.90 5.09 86.30 0.44 2.34 16 5 N -0.70 -21.87 6.45 -513.88 -3.31 -25.19 16 6 C 0.07 2.35 6.07 86.30 0.52 2.87 16 7 C 0.06 2.16 6.22 71.98 0.45 2.60 16 8 O -0.40 -20.85 10.27 -148.98 -1.53 -22.38 16 9 C 0.21 12.28 5.69 71.24 0.41 12.69 16 10 C -0.55 -34.18 9.43 25.60 0.24 -33.94 16 11 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 12 C 0.01 0.34 5.46 84.65 0.46 0.80 16 13 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 14 Si 0.98 45.98 29.54 68.60 2.03 48.01 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 C 0.08 1.52 2.80 31.09 0.09 1.61 16 19 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 20 C -0.15 -2.15 5.57 31.61 0.18 -1.98 16 21 C -0.15 -1.98 7.09 31.61 0.22 -1.76 16 22 C 0.04 0.57 7.63 72.49 0.55 1.12 16 23 O -0.40 -9.76 10.77 -148.98 -1.61 -11.36 16 24 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.07 1.06 7.21 -2.39 -0.02 1.05 16 26 H 0.06 1.11 6.68 -2.39 -0.02 1.10 16 27 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 1.71 7.67 -2.39 -0.02 1.69 16 29 H 0.34 9.78 6.98 -89.70 -0.63 9.15 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H -0.02 -0.93 8.14 -2.39 -0.02 -0.94 16 36 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 37 H 0.07 1.15 7.73 -2.39 -0.02 1.14 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.48 338.25 0.37 -72.11 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.34 Total: 13.32 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.17 Total: -17.38 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -3.03 Total: -82.32 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -3.14 Total: -33.75 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -72.48 0.37 -72.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720535700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.552 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds