Wall clock time and date at job start Mon Mar 30 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47918 * 2 1 4 4 C 1.53089 * 109.49351 * 239.97077 * 2 1 3 5 5 C 1.53178 * 109.15986 * 297.62026 * 4 2 1 6 6 H 1.09009 * 109.61867 * 62.93109 * 5 4 2 7 7 N 1.46904 * 109.54709 * 183.15231 * 5 4 2 8 8 C 1.46900 * 110.99510 * 303.50955 * 7 5 4 9 9 C 1.46897 * 111.00044 * 179.55479 * 7 5 4 10 10 C 1.53006 * 109.46573 * 189.99702 * 9 7 5 11 11 O 1.42901 * 109.46804 * 65.00294 * 10 9 7 12 12 C 1.42899 * 113.99607 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46876 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.53182 * 109.03739 * 303.01863 * 5 4 2 22 22 C 1.53091 * 109.16221 * 56.98080 * 21 5 4 23 23 O 1.42899 * 109.47952 * 120.01502 * 2 1 3 24 24 H 1.08998 * 109.47167 * 299.98277 * 1 2 3 25 25 H 1.09002 * 109.47021 * 59.98006 * 1 2 3 26 26 H 1.09000 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.52561 * 177.71480 * 4 2 1 28 28 H 1.09007 * 109.52392 * 57.51877 * 4 2 1 29 29 H 1.08994 * 109.47309 * 296.04229 * 8 7 5 30 30 H 1.08998 * 109.47125 * 56.04662 * 8 7 5 31 31 H 1.09006 * 109.46892 * 176.03941 * 8 7 5 32 32 H 1.08997 * 109.47142 * 70.00229 * 9 7 5 33 33 H 1.08995 * 109.47294 * 309.99836 * 9 7 5 34 34 H 1.08995 * 109.47721 * 304.99997 * 10 9 7 35 35 H 1.09001 * 109.46499 * 184.99873 * 10 9 7 36 36 H 1.09004 * 109.47206 * 60.00168 * 12 11 10 37 37 H 1.08994 * 109.47548 * 299.99825 * 12 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.52122 * 176.88742 * 21 5 4 40 40 H 1.08992 * 109.51823 * 297.07606 * 21 5 4 41 41 H 1.09008 * 109.48260 * 62.37375 * 22 21 5 42 42 H 1.09000 * 109.48206 * 182.40732 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0409 -0.7222 -1.2494 5 6 1.5763 -2.1813 -1.2119 6 1 0.4872 -2.2196 -1.2415 7 7 2.1248 -2.9017 -2.3688 8 6 1.7405 -2.2475 -3.6267 9 6 1.7068 -4.3099 -2.3587 10 6 2.4885 -5.0815 -3.4239 11 8 3.8753 -5.0963 -3.0795 12 6 4.6988 -5.7963 -4.0144 13 6 6.1332 -5.7480 -3.5548 14 1 6.3902 -5.2345 -2.6401 15 6 7.1166 -6.3648 -4.2989 16 7 6.8036 -6.9903 -5.4125 17 14 8.8935 -6.3115 -3.7252 18 1 8.9801 -5.5518 -2.4522 19 1 9.3857 -7.6959 -3.5094 20 1 9.7273 -5.6450 -4.7576 21 6 2.0770 -2.8321 0.0812 22 6 1.5647 -2.0283 1.2793 23 8 2.0065 -0.6739 1.1665 24 1 -0.3633 0.5136 0.8901 25 1 -0.3633 0.5142 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 -0.6872 -1.2707 28 1 1.6423 -0.2359 -2.1399 29 1 0.6577 -2.2915 -3.7431 30 1 2.0619 -1.2061 -3.6076 31 1 2.2170 -2.7594 -4.4628 32 1 0.6401 -4.3738 -2.5733 33 1 1.9065 -4.7411 -1.3778 34 1 2.3595 -4.5968 -4.3916 35 1 2.1165 -6.1047 -3.4775 36 1 4.6157 -5.3267 -4.9946 37 1 4.3726 -6.8342 -4.0799 38 1 7.4955 -7.4239 -5.9362 39 1 1.7043 -3.8546 0.1424 40 1 3.1668 -2.8396 0.0868 41 1 0.4751 -2.0550 1.2959 42 1 1.9532 -2.4619 2.2008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721494221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:46 Heat of formation + Delta-G solvation = -92.142671 kcal Electronic energy + Delta-G solvation = -20103.942377 eV Core-core repulsion = 17084.157753 eV Total energy + Delta-G solvation = -3019.784624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12499 -37.62339 -36.02854 -32.89203 -32.50864 -31.91418 -29.48380 -27.72359 -26.90725 -25.87210 -23.12366 -22.72941 -22.20486 -20.61753 -19.24892 -16.97412 -16.36192 -16.18003 -15.70350 -15.49201 -14.99869 -14.67855 -14.43914 -14.13766 -13.88976 -13.56844 -13.30132 -12.90937 -12.84710 -12.49990 -12.12031 -12.04391 -11.65396 -11.44267 -11.31110 -11.24701 -11.19247 -10.78812 -10.73352 -10.39730 -10.27396 -10.15256 -9.92689 -9.59852 -9.01532 -8.74459 -8.10285 -8.02403 -6.05725 -4.06288 3.32955 3.39271 3.46736 3.72538 3.99026 4.40238 4.57565 4.71707 4.83561 4.89313 4.97486 5.10785 5.16390 5.26908 5.27848 5.30971 5.36228 5.48915 5.50677 5.58717 5.68131 5.70565 5.74023 5.80780 5.88057 5.99045 6.04238 6.09091 6.16978 6.20288 6.35201 6.40025 7.13074 7.15930 7.28350 7.29232 7.49479 7.86824 8.22897 8.68181 9.09120 9.58525 11.06087 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.004266 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.145276 B = 6562.582769 C = 7029.819021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.088 3.912 3 H 0.102 0.898 4 C -0.144 4.144 5 C 0.087 3.913 6 H 0.036 0.964 7 N -0.521 5.521 8 C 0.021 3.979 9 C 0.057 3.943 10 C 0.067 3.933 11 O -0.379 6.379 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.067 0.933 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.151 4.151 22 C 0.060 3.940 23 O -0.377 6.377 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.017 0.983 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.122 11.706 8.896 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.030 3.970 3 H 0.120 0.880 4 C -0.182 4.182 5 C -0.022 4.022 6 H 0.054 0.946 7 N -0.245 5.245 8 C -0.127 4.127 9 C -0.071 4.071 10 C -0.011 4.011 11 O -0.298 6.298 12 C 0.119 3.881 13 C -0.547 4.547 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.189 4.189 22 C -0.017 4.017 23 O -0.296 6.296 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.331 11.784 9.078 20.656 hybrid contribution -0.276 -0.474 -0.563 0.786 sum -14.607 11.310 8.515 20.341 Atomic orbital electron populations 1.22473 0.96770 1.02674 1.02488 1.22171 0.93105 0.96468 0.85267 0.88048 1.22320 1.03248 0.94832 0.97836 1.21626 0.95768 0.93561 0.91201 0.94601 1.61894 1.59555 1.01611 1.01485 1.22472 0.97398 1.00060 0.92785 1.22221 0.95400 0.88305 1.01131 1.22248 0.85860 0.96990 0.96047 1.87950 1.14462 1.77039 1.50374 1.20176 0.89608 0.90379 0.87919 1.21111 0.90707 1.33859 1.08993 0.91466 1.24949 0.99584 0.95186 0.94881 1.69981 1.33583 1.35792 1.14706 0.86302 0.83742 0.77741 0.78850 1.19434 1.20924 1.20894 1.22322 1.03783 0.99293 0.93538 1.22596 0.98292 0.82234 0.98553 1.87983 1.73765 1.24818 1.43029 0.91963 0.91623 0.91941 0.89685 0.90933 0.96452 0.91287 0.90721 0.94650 0.89812 0.94599 0.94449 0.97984 0.98066 0.92828 0.90782 0.89401 0.93315 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 8.65 37.16 0.32 -1.24 16 2 C 0.09 0.90 3.91 -26.68 -0.10 0.79 16 3 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -1.65 4.47 -26.59 -0.12 -1.77 16 5 C 0.09 1.09 1.71 -67.52 -0.12 0.97 16 6 H 0.04 0.42 6.63 -51.92 -0.34 0.08 16 7 N -0.52 -7.96 4.58 -234.66 -1.07 -9.03 16 8 C 0.02 0.28 8.97 60.06 0.54 0.82 16 9 C 0.06 0.88 5.16 -3.82 -0.02 0.86 16 10 C 0.07 1.27 5.99 37.16 0.22 1.49 16 11 O -0.38 -9.41 10.27 -35.23 -0.36 -9.77 16 12 C 0.19 5.45 5.69 36.01 0.20 5.66 16 13 C -0.51 -15.34 9.43 -34.44 -0.32 -15.66 16 14 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 17 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.15 -1.89 5.11 -26.59 -0.14 -2.03 16 22 C 0.06 0.64 6.52 37.20 0.24 0.89 16 23 O -0.38 -4.61 10.60 -35.23 -0.37 -4.98 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.54 4.98 -51.93 -0.26 0.28 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.74 6.47 -51.93 -0.34 0.40 16 29 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.84 6.10 -51.93 -0.32 0.53 16 31 H 0.07 1.12 6.37 -51.93 -0.33 0.79 16 32 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.08 1.29 5.90 -51.93 -0.31 0.98 16 34 H 0.04 0.67 6.34 -51.93 -0.33 0.34 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 0.88 6.38 -51.93 -0.33 0.55 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.05 0.45 6.34 -51.92 -0.33 0.12 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -32.48 321.84 -7.71 -40.19 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -7.08 Total: -4.10 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 0.61 Total: -7.72 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.34 Total: -35.73 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.74 Total: -14.75 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.48 -7.71 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721494221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.955 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds