Wall clock time and date at job start Mon Mar 30 2020 04:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.48031 * 2 1 4 4 C 1.53088 * 109.48181 * 120.02415 * 2 1 3 5 5 C 1.53183 * 109.16341 * 177.60066 * 4 2 1 6 6 H 1.08999 * 109.53958 * 62.97678 * 5 4 2 7 7 N 1.46900 * 109.53997 * 183.15271 * 5 4 2 8 8 C 1.46898 * 110.99859 * 65.87409 * 7 5 4 9 9 C 1.46901 * 110.99497 * 189.82439 * 7 5 4 10 10 C 1.53003 * 109.47241 * 75.78894 * 9 7 5 11 11 O 1.42896 * 109.47029 * 65.04886 * 10 9 7 12 12 C 1.42901 * 113.99991 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47487 * 179.97438 * 12 11 10 14 14 H 1.08010 * 119.99583 * 0.02562 * 13 12 11 15 15 C 1.37867 * 120.00393 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00071 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00219 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47067 * 59.99576 * 17 15 13 19 19 H 1.48505 * 109.47142 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46791 * 299.99629 * 17 15 13 21 21 C 1.53171 * 109.11231 * 303.06479 * 5 4 2 22 22 C 1.53111 * 109.15784 * 56.84408 * 21 5 4 23 23 O 1.42899 * 109.48942 * 302.52928 * 22 21 5 24 24 H 1.08991 * 109.46983 * 299.97718 * 1 2 3 25 25 H 1.09001 * 109.47046 * 59.97368 * 1 2 3 26 26 H 1.09003 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.51986 * 57.69921 * 4 2 1 28 28 H 1.08991 * 109.52222 * 297.51171 * 4 2 1 29 29 H 1.09000 * 109.46856 * 189.03935 * 8 7 5 30 30 H 1.08997 * 109.47527 * 309.03535 * 8 7 5 31 31 H 1.08998 * 109.47287 * 69.03953 * 8 7 5 32 32 H 1.09001 * 109.47468 * 315.78514 * 9 7 5 33 33 H 1.09005 * 109.46742 * 195.78376 * 9 7 5 34 34 H 1.08997 * 109.47045 * 185.05067 * 10 9 7 35 35 H 1.09005 * 109.46706 * 305.05085 * 10 9 7 36 36 H 1.08996 * 109.47330 * 299.99870 * 12 11 10 37 37 H 1.09003 * 109.46999 * 60.00502 * 12 11 10 38 38 H 0.97000 * 120.00698 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.52314 * 176.83623 * 21 5 4 40 40 H 1.09001 * 109.52380 * 297.03096 * 21 5 4 41 41 H 1.08998 * 109.48572 * 182.49246 * 22 21 5 42 42 H 1.09011 * 109.41250 * 62.51148 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0405 -0.7221 1.2496 5 6 3.5711 -0.7705 1.2123 6 1 3.9688 0.2439 1.2425 7 7 4.0671 -1.5276 2.3693 8 6 3.6680 -2.9388 2.2854 9 6 5.5250 -1.3995 2.4964 10 6 5.8684 -0.0206 3.0637 11 8 5.3630 0.0856 4.3961 12 6 5.6318 1.3422 5.0212 13 6 5.0567 1.3436 6.4142 14 1 4.5381 0.4718 6.7851 15 6 5.1926 2.4575 7.2150 16 7 5.8245 3.5189 6.7636 17 14 4.4803 2.4590 8.9420 18 1 5.1029 1.3689 9.7351 19 1 4.7585 3.7653 9.5911 20 1 3.0125 2.2442 8.8721 21 6 4.0198 -1.4584 -0.0807 22 6 3.4309 -0.7090 -1.2790 23 8 2.0068 -0.6741 -1.1664 24 1 -0.3633 0.5134 0.8901 25 1 -0.3633 0.5142 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6444 -1.7374 1.2709 28 1 1.7147 -0.1843 2.1398 29 1 3.9062 -3.4401 3.2235 30 1 2.5955 -3.0028 2.1015 31 1 4.2060 -3.4207 1.4691 32 1 5.9868 -1.5142 1.5157 33 1 5.9005 -2.1722 3.1674 34 1 6.9506 0.1087 3.0742 35 1 5.4161 0.7513 2.4409 36 1 6.7092 1.4994 5.0725 37 1 5.1750 2.1426 4.4392 38 1 5.9204 4.3026 7.3271 39 1 5.1081 -1.4465 -0.1409 40 1 3.6649 -2.4890 -0.0871 41 1 3.7104 -1.2199 -2.2004 42 1 3.8193 0.3094 -1.2959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721494223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:52 Heat of formation + Delta-G solvation = -96.202267 kcal Electronic energy + Delta-G solvation = -20106.964123 eV Core-core repulsion = 17087.003462 eV Total energy + Delta-G solvation = -3019.960661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02587 -37.55050 -36.08290 -32.94166 -32.70283 -31.78820 -29.49649 -27.79270 -26.90282 -25.20869 -23.51500 -22.63905 -22.18034 -20.92004 -19.36849 -16.49454 -16.38626 -16.26150 -15.92550 -15.45434 -14.96101 -14.70270 -14.43724 -14.23867 -13.87997 -13.58997 -13.15384 -12.86911 -12.59504 -12.44119 -12.20157 -11.84038 -11.71400 -11.67432 -11.28439 -11.13319 -11.00609 -10.87191 -10.79092 -10.66011 -10.41637 -10.18781 -9.94759 -9.61501 -9.04400 -8.74077 -8.08930 -7.99187 -6.05842 -4.06783 3.35597 3.37779 3.42181 3.66087 3.98310 4.39476 4.66155 4.69698 4.81916 4.92732 5.02903 5.08228 5.15604 5.30385 5.30540 5.35420 5.43464 5.46487 5.53605 5.58629 5.69008 5.73725 5.75323 5.87308 5.90298 5.95521 6.05515 6.07568 6.09203 6.22019 6.28863 6.31977 7.14427 7.15926 7.26529 7.28637 7.49525 7.85681 8.22645 8.68328 9.07918 9.57942 11.05840 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.004452 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.905587 B = 6288.375469 C = 6736.621397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 H 0.059 0.941 4 C -0.140 4.140 5 C 0.081 3.919 6 H 0.084 0.916 7 N -0.518 5.518 8 C 0.022 3.978 9 C 0.057 3.943 10 C 0.069 3.931 11 O -0.380 6.380 12 C 0.195 3.805 13 C -0.510 4.510 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.901 5.901 17 Si 0.907 3.093 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.192 4.192 22 C 0.068 3.932 23 O -0.383 6.383 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -9.351 -15.829 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.077 0.923 4 C -0.178 4.178 5 C -0.027 4.027 6 H 0.102 0.898 7 N -0.240 5.240 8 C -0.126 4.126 9 C -0.070 4.070 10 C -0.009 4.009 11 O -0.299 6.299 12 C 0.120 3.880 13 C -0.549 4.549 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.541 5.541 17 Si 0.734 3.266 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.231 4.231 22 C -0.009 4.009 23 O -0.303 6.303 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.825 -9.200 -15.353 18.822 hybrid contribution 0.572 0.149 0.244 0.639 sum -5.253 -9.051 -15.109 18.380 Atomic orbital electron populations 1.21748 0.93002 1.02789 1.02470 1.22135 0.95088 0.95190 0.84833 0.92308 1.22283 0.94810 1.02059 0.98608 1.21801 0.95362 0.98308 0.87265 0.89764 1.62066 1.12304 1.10416 1.39259 1.22442 1.00807 0.88755 1.00564 1.22194 0.87395 0.98748 0.98687 1.22215 0.96314 0.95102 0.87249 1.87937 1.78837 1.38739 1.24406 1.20158 0.94965 0.80233 0.92615 1.21028 1.35749 1.00511 0.97567 0.91609 1.24938 0.95477 0.95104 0.98997 1.69955 1.42422 1.04363 1.37312 0.86411 0.79613 0.77104 0.83424 1.20056 1.21224 1.20025 1.22932 1.01389 1.01579 0.97194 1.22441 0.81160 0.99491 0.97847 1.87894 1.20813 1.78157 1.43417 0.90787 0.92042 0.91958 0.91003 0.89603 0.91330 0.91423 0.95969 0.93966 0.90252 0.94494 0.94869 0.98096 0.97998 0.92705 0.90943 0.90708 0.89195 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.57 37.16 0.36 -1.03 16 2 C 0.09 0.98 3.26 -26.69 -0.09 0.89 16 3 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.14 -1.75 4.71 -26.59 -0.13 -1.88 16 5 C 0.08 1.09 2.19 -67.53 -0.15 0.94 16 6 H 0.08 1.24 6.57 -51.93 -0.34 0.90 16 7 N -0.52 -7.85 4.59 -234.66 -1.08 -8.93 16 8 C 0.02 0.28 8.50 60.06 0.51 0.79 16 9 C 0.06 0.88 5.27 -3.82 -0.02 0.86 16 10 C 0.07 1.32 6.13 37.16 0.23 1.55 16 11 O -0.38 -9.43 10.27 -35.23 -0.36 -9.79 16 12 C 0.19 5.47 5.69 36.01 0.20 5.68 16 13 C -0.51 -15.34 9.43 -34.44 -0.32 -15.67 16 14 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 17 Si 0.91 22.18 29.54 -169.99 -5.02 17.15 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.19 -2.09 4.74 -26.59 -0.13 -2.22 16 22 C 0.07 0.70 6.84 37.21 0.25 0.96 16 23 O -0.38 -4.66 10.41 -35.23 -0.37 -5.03 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.88 6.26 -51.93 -0.33 0.55 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.80 6.06 -51.93 -0.31 0.48 16 31 H 0.02 0.24 6.71 -51.93 -0.35 -0.10 16 32 H 0.04 0.54 6.24 -51.93 -0.32 0.21 16 33 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.03 0.62 6.66 -51.93 -0.35 0.27 16 36 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 37 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.07 0.75 6.59 -51.93 -0.34 0.41 16 40 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -32.20 326.31 -7.83 -40.03 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -7.28 Total: -4.14 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 0.62 Total: -7.60 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.34 Total: -35.54 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.73 Total: -14.82 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.20 -7.83 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721494223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.171 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds