Wall clock time and date at job start Mon Mar 30 2020 04:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.48031 * 2 1 4 4 C 1.53088 * 109.48181 * 120.02415 * 2 1 3 5 5 C 1.53183 * 109.16341 * 177.60066 * 4 2 1 6 6 H 1.08999 * 109.53958 * 62.97678 * 5 4 2 7 7 N 1.46900 * 109.53997 * 183.15271 * 5 4 2 8 8 C 1.46898 * 110.99859 * 65.87409 * 7 5 4 9 9 C 1.46901 * 110.99497 * 189.82439 * 7 5 4 10 10 C 1.53003 * 109.47241 * 75.78894 * 9 7 5 11 11 O 1.42896 * 109.47029 * 65.04886 * 10 9 7 12 12 C 1.42901 * 113.99991 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47487 * 179.97438 * 12 11 10 14 14 H 1.08010 * 119.99583 * 0.02562 * 13 12 11 15 15 C 1.37867 * 120.00393 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00071 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00219 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47067 * 59.99576 * 17 15 13 19 19 H 1.48505 * 109.47142 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46791 * 299.99629 * 17 15 13 21 21 C 1.53171 * 109.11231 * 303.06479 * 5 4 2 22 22 C 1.53111 * 109.15784 * 56.84408 * 21 5 4 23 23 O 1.42899 * 109.48942 * 302.52928 * 22 21 5 24 24 H 1.08991 * 109.46983 * 299.97718 * 1 2 3 25 25 H 1.09001 * 109.47046 * 59.97368 * 1 2 3 26 26 H 1.09003 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.51986 * 57.69921 * 4 2 1 28 28 H 1.08991 * 109.52222 * 297.51171 * 4 2 1 29 29 H 1.09000 * 109.46856 * 189.03935 * 8 7 5 30 30 H 1.08997 * 109.47527 * 309.03535 * 8 7 5 31 31 H 1.08998 * 109.47287 * 69.03953 * 8 7 5 32 32 H 1.09001 * 109.47468 * 315.78514 * 9 7 5 33 33 H 1.09005 * 109.46742 * 195.78376 * 9 7 5 34 34 H 1.08997 * 109.47045 * 185.05067 * 10 9 7 35 35 H 1.09005 * 109.46706 * 305.05085 * 10 9 7 36 36 H 1.08996 * 109.47330 * 299.99870 * 12 11 10 37 37 H 1.09003 * 109.46999 * 60.00502 * 12 11 10 38 38 H 0.97000 * 120.00698 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.52314 * 176.83623 * 21 5 4 40 40 H 1.09001 * 109.52380 * 297.03096 * 21 5 4 41 41 H 1.08998 * 109.48572 * 182.49246 * 22 21 5 42 42 H 1.09011 * 109.41250 * 62.51148 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0405 -0.7221 1.2496 5 6 3.5711 -0.7705 1.2123 6 1 3.9688 0.2439 1.2425 7 7 4.0671 -1.5276 2.3693 8 6 3.6680 -2.9388 2.2854 9 6 5.5250 -1.3995 2.4964 10 6 5.8684 -0.0206 3.0637 11 8 5.3630 0.0856 4.3961 12 6 5.6318 1.3422 5.0212 13 6 5.0567 1.3436 6.4142 14 1 4.5381 0.4718 6.7851 15 6 5.1926 2.4575 7.2150 16 7 5.8245 3.5189 6.7636 17 14 4.4803 2.4590 8.9420 18 1 5.1029 1.3689 9.7351 19 1 4.7585 3.7653 9.5911 20 1 3.0125 2.2442 8.8721 21 6 4.0198 -1.4584 -0.0807 22 6 3.4309 -0.7090 -1.2790 23 8 2.0068 -0.6741 -1.1664 24 1 -0.3633 0.5134 0.8901 25 1 -0.3633 0.5142 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6444 -1.7374 1.2709 28 1 1.7147 -0.1843 2.1398 29 1 3.9062 -3.4401 3.2235 30 1 2.5955 -3.0028 2.1015 31 1 4.2060 -3.4207 1.4691 32 1 5.9868 -1.5142 1.5157 33 1 5.9005 -2.1722 3.1674 34 1 6.9506 0.1087 3.0742 35 1 5.4161 0.7513 2.4409 36 1 6.7092 1.4994 5.0725 37 1 5.1750 2.1426 4.4392 38 1 5.9204 4.3026 7.3271 39 1 5.1081 -1.4465 -0.1409 40 1 3.6649 -2.4890 -0.0871 41 1 3.7104 -1.2199 -2.2004 42 1 3.8193 0.3094 -1.2959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721494223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:51 Heat of formation + Delta-G solvation = -118.672281 kcal Electronic energy + Delta-G solvation = -20107.938496 eV Core-core repulsion = 17087.003462 eV Total energy + Delta-G solvation = -3020.935034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01122 -38.90557 -37.68159 -34.92199 -33.81217 -32.88838 -30.92445 -29.01427 -28.63387 -26.35343 -24.54678 -24.41978 -23.70980 -21.98415 -20.43925 -18.60636 -17.60094 -17.36800 -17.19679 -16.99985 -16.38099 -16.02782 -15.79687 -15.63303 -15.21986 -14.82023 -14.46846 -14.21155 -13.67200 -13.55652 -13.37222 -13.21267 -13.05323 -12.91045 -12.75219 -12.64678 -12.41395 -12.36835 -12.09505 -11.92806 -11.81281 -11.66045 -11.28776 -11.14785 -10.84666 -10.54032 -10.17441 -9.08290 -8.31005 -6.43229 1.39873 1.44982 1.53332 2.35678 2.79930 2.90947 3.02549 3.25304 3.70874 3.77757 3.94861 4.01239 4.15543 4.19970 4.21799 4.30769 4.41711 4.47170 4.55377 4.58236 4.65424 4.67482 4.74974 4.78076 4.82970 4.87998 4.93441 4.99990 5.00481 5.04554 5.18972 5.19525 5.25650 5.31504 5.55912 5.98065 6.14918 6.20378 6.27080 6.57790 6.86985 7.29121 8.81228 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.004452 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.905587 B = 6288.375469 C = 6736.621397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.080 3.920 6 H 0.063 0.937 7 N -0.549 5.549 8 C 0.026 3.974 9 C 0.067 3.933 10 C 0.060 3.940 11 O -0.395 6.395 12 C 0.210 3.790 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.266 1.266 21 C -0.181 4.181 22 C 0.064 3.936 23 O -0.393 6.393 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.032 0.968 36 H -0.017 1.017 37 H -0.020 1.020 38 H 0.270 0.730 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -10.322 -16.112 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.028 3.972 3 H 0.072 0.928 4 C -0.173 4.173 5 C -0.028 4.028 6 H 0.081 0.919 7 N -0.272 5.272 8 C -0.121 4.121 9 C -0.061 4.061 10 C -0.018 4.018 11 O -0.314 6.314 12 C 0.135 3.865 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.571 5.571 17 Si 0.805 3.195 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.191 1.191 21 C -0.220 4.220 22 C -0.013 4.013 23 O -0.313 6.313 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.001 0.999 37 H -0.002 1.002 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.314 -10.187 -15.664 19.723 hybrid contribution 0.760 0.457 0.247 0.920 sum -5.554 -9.730 -15.418 19.058 Atomic orbital electron populations 1.21747 0.91711 1.03197 1.03098 1.22149 0.96160 0.94657 0.84251 0.92848 1.22224 0.94513 1.02147 0.98385 1.21777 0.95600 0.97336 0.88127 0.91868 1.61986 1.12148 1.12193 1.40827 1.22426 1.01389 0.87286 1.01043 1.22091 0.88173 0.95895 0.99903 1.22575 0.96744 0.97846 0.84592 1.87892 1.79416 1.36817 1.27314 1.19769 0.93332 0.81086 0.92303 1.21346 1.37059 1.01075 0.98900 0.92207 1.25952 0.95257 0.94214 1.03711 1.70065 1.42827 1.05006 1.39216 0.85246 0.79024 0.77850 0.77358 1.18960 1.19875 1.19102 1.22831 1.01915 1.01430 0.95828 1.22606 0.80314 0.99872 0.98507 1.87887 1.21859 1.78163 1.43366 0.90315 0.91288 0.91639 0.90499 0.91636 0.91905 0.90860 0.93986 0.90714 0.90322 0.93628 0.94971 0.99915 1.00245 0.92070 0.89999 0.90232 0.86992 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.57 71.98 0.69 -1.90 16 2 C 0.09 1.91 3.26 30.62 0.10 2.01 16 3 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 4 C -0.13 -3.35 4.71 30.68 0.14 -3.20 16 5 C 0.08 2.09 2.19 45.03 0.10 2.19 16 6 H 0.06 1.89 6.57 -2.39 -0.02 1.87 16 7 N -0.55 -16.22 4.59 -896.34 -4.12 -20.34 16 8 C 0.03 0.61 8.50 127.69 1.09 1.70 16 9 C 0.07 1.98 5.27 86.30 0.45 2.43 16 10 C 0.06 2.30 6.13 71.98 0.44 2.74 16 11 O -0.39 -20.13 10.27 -148.98 -1.53 -21.66 16 12 C 0.21 12.26 5.69 71.24 0.41 12.66 16 13 C -0.55 -33.52 9.43 25.60 0.24 -33.28 16 14 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 15 C 0.01 0.41 5.46 84.65 0.46 0.87 16 16 N -0.93 -57.03 13.29 21.44 0.28 -56.75 16 17 Si 0.98 45.18 29.54 68.60 2.03 47.21 16 18 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 C -0.18 -3.57 4.74 30.69 0.15 -3.42 16 22 C 0.06 1.20 6.84 72.02 0.49 1.69 16 23 O -0.39 -8.93 10.41 -148.98 -1.55 -10.48 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.81 6.26 -2.38 -0.01 1.79 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.62 6.06 -2.39 -0.01 1.60 16 31 H 0.04 0.82 6.71 -2.39 -0.02 0.80 16 32 H 0.08 1.72 6.24 -2.39 -0.01 1.71 16 33 H 0.08 2.33 7.94 -2.38 -0.02 2.31 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.03 1.23 6.66 -2.38 -0.02 1.22 16 36 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 37 H -0.02 -1.24 8.14 -2.39 -0.02 -1.25 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.08 1.46 6.59 -2.39 -0.02 1.45 16 40 H 0.08 1.52 6.36 -2.39 -0.02 1.51 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -69.23 326.31 0.84 -68.39 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.97 Total: 9.15 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.76 Total: -15.52 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -3.83 Total: -77.09 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -3.08 Total: -32.14 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -69.23 0.84 -68.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721494223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.282 kcal (2) G-P(sol) polarization free energy of solvation -69.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds