Wall clock time and date at job start Mon Mar 30 2020 05:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 O 1.42893 * 109.47216 * 119.99656 * 2 1 3 5 5 C 1.42900 * 113.99849 * 133.67130 * 4 2 1 6 6 C 1.53001 * 110.45632 * 63.56276 * 5 4 2 7 7 N 1.46900 * 109.47146 * 62.81791 * 6 5 4 8 8 C 1.46894 * 110.99790 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47413 * 35.00385 * 8 7 6 10 10 C 1.52999 * 109.47421 * 274.99730 * 8 7 6 11 11 C 1.50702 * 109.47203 * 154.99938 * 8 7 6 12 12 H 1.08004 * 120.00334 * 88.19871 * 11 8 7 13 13 C 1.37880 * 120.00239 * 268.20389 * 11 8 7 14 14 N 1.31520 * 119.99705 * 355.11882 * 13 11 8 15 15 Si 1.86803 * 120.00235 * 175.11643 * 13 11 8 16 16 H 1.48501 * 109.46879 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.46854 * 240.00042 * 15 13 11 18 18 H 1.48493 * 109.47069 * 119.99850 * 15 13 11 19 19 C 1.54514 * 110.51260 * 300.95835 * 5 4 2 20 20 C 1.54482 * 104.06001 * 241.21694 * 19 5 4 21 21 O 1.44423 * 104.80641 * 23.97912 * 20 19 5 22 22 C 1.44431 * 105.27381 * 319.48706 * 21 20 19 23 23 H 1.09003 * 109.47004 * 300.00088 * 1 2 3 24 24 H 1.08998 * 109.46977 * 59.99645 * 1 2 3 25 25 H 1.08989 * 109.47163 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46732 * 240.00364 * 2 1 3 27 27 H 1.09001 * 109.47218 * 184.38817 * 3 2 1 28 28 H 1.09006 * 109.47404 * 304.38938 * 3 2 1 29 29 H 1.08994 * 109.47684 * 64.38653 * 3 2 1 30 30 H 1.09000 * 109.47141 * 302.81735 * 6 5 4 31 31 H 1.09000 * 109.47431 * 182.82298 * 6 5 4 32 32 H 1.00893 * 110.99774 * 56.04709 * 7 6 5 33 33 H 1.08999 * 109.46917 * 295.89190 * 10 8 7 34 34 H 1.08999 * 109.46948 * 55.88693 * 10 8 7 35 35 H 1.08991 * 109.47620 * 175.88942 * 10 8 7 36 36 H 0.96997 * 120.00113 * 5.37191 * 14 13 11 37 37 H 1.08999 * 110.50982 * 359.85910 * 19 5 4 38 38 H 1.08996 * 110.51046 * 122.57673 * 19 5 4 39 39 H 1.08998 * 110.37361 * 142.80869 * 20 19 5 40 40 H 1.09004 * 110.37268 * 265.14401 * 20 19 5 41 41 H 1.09001 * 110.37436 * 281.67986 * 22 21 20 42 42 H 1.08994 * 110.37027 * 159.34385 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 3.0500 -1.6150 0.9090 6 6 4.2905 -0.9029 0.3659 7 7 4.8036 0.0283 1.3796 8 6 5.9971 0.7321 0.8917 9 1 5.8982 0.9167 -0.1780 10 6 7.2367 -0.1272 1.1486 11 6 6.1374 2.0456 1.6171 12 1 6.6790 2.0920 2.5504 13 6 5.5742 3.1882 1.0895 14 7 4.9980 3.1520 -0.0921 15 14 5.6297 4.7876 2.0531 16 1 6.3281 4.5636 3.3443 17 1 4.2451 5.2561 2.3146 18 1 6.3593 5.8142 1.2666 19 6 2.5695 -2.6978 -0.0831 20 6 2.6835 -4.0154 0.7152 21 8 2.6110 -3.6148 2.1009 22 6 3.3974 -2.4066 2.1893 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1272 1.4435 -0.0786 28 1 1.6139 1.9786 -0.8481 29 1 1.7424 1.9332 0.9266 30 1 4.0264 -0.3495 -0.5353 31 1 5.0576 -1.6398 0.1280 32 1 4.9951 -0.4507 2.2467 33 1 7.3769 -0.2508 2.2224 34 1 7.1037 -1.1045 0.6847 35 1 8.1124 0.3614 0.7217 36 1 4.8998 2.3070 -0.5582 37 1 1.5352 -2.5163 -0.3750 38 1 3.2158 -2.7257 -0.9604 39 1 1.8562 -4.6810 0.4690 40 1 3.6371 -4.5021 0.5102 41 1 4.4605 -2.6464 2.2104 42 1 3.1185 -1.8364 3.0753 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722359530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:43 Heat of formation + Delta-G solvation = -98.149125 kcal Electronic energy + Delta-G solvation = -21270.265183 eV Core-core repulsion = 18250.220099 eV Total energy + Delta-G solvation = -3020.045083 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.04232 -37.25394 -35.93524 -33.09138 -31.83033 -30.93896 -29.63903 -27.65178 -26.59987 -24.77102 -24.12794 -22.62302 -21.19908 -20.52889 -19.42486 -17.14523 -16.84170 -15.82523 -15.58315 -14.84275 -14.68056 -14.33764 -13.82579 -13.68192 -13.43493 -13.17192 -12.97285 -12.43529 -12.39608 -12.04619 -11.79516 -11.65331 -11.52790 -11.42784 -11.26263 -11.12604 -10.94132 -10.78602 -10.60612 -10.27288 -10.09209 -10.01646 -9.68431 -9.64172 -9.07854 -8.58108 -8.29520 -7.10633 -6.27142 -3.99768 3.48130 3.52985 3.65408 3.88744 4.06459 4.55866 4.63424 4.88219 4.94293 5.11800 5.30510 5.35158 5.37599 5.54447 5.60683 5.64485 5.67454 5.71480 5.81480 5.88322 5.94655 6.03913 6.04922 6.20860 6.25900 6.28736 6.32913 6.38874 6.50124 6.53627 6.77867 6.82096 6.91414 7.09088 7.37114 7.77124 8.04018 8.39707 8.50700 8.64236 8.96218 9.75139 11.09814 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.007397 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.230941 B = 3784.327917 C = 4593.029764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.085 3.915 3 C -0.165 4.165 4 O -0.347 6.347 5 C 0.096 3.904 6 C 0.039 3.961 7 N -0.661 5.661 8 C 0.187 3.813 9 H 0.042 0.958 10 C -0.163 4.163 11 C -0.576 4.576 12 H 0.045 0.955 13 C 0.034 3.966 14 N -0.903 5.903 15 Si 1.071 2.929 16 H -0.292 1.292 17 H -0.288 1.288 18 H -0.290 1.290 19 C -0.185 4.185 20 C 0.049 3.951 21 O -0.374 6.374 22 C 0.060 3.940 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.018 0.982 32 H 0.317 0.683 33 H 0.041 0.959 34 H 0.019 0.981 35 H 0.048 0.952 36 H 0.269 0.731 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -10.745 -1.472 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.028 3.972 3 C -0.222 4.222 4 O -0.266 6.266 5 C 0.055 3.945 6 C -0.092 4.092 7 N -0.292 5.292 8 C 0.081 3.919 9 H 0.060 0.940 10 C -0.223 4.223 11 C -0.615 4.615 12 H 0.063 0.937 13 C -0.172 4.172 14 N -0.539 5.539 15 Si 0.900 3.100 16 H -0.218 1.218 17 H -0.214 1.214 18 H -0.217 1.217 19 C -0.223 4.223 20 C -0.028 4.028 21 O -0.292 6.292 22 C -0.016 4.016 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.036 0.964 32 H 0.135 0.865 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.280 -8.696 -1.384 10.816 hybrid contribution 1.237 -2.302 -0.365 2.639 sum -5.044 -10.998 -1.749 12.225 Atomic orbital electron populations 1.22005 0.95410 1.01447 1.02185 1.22018 0.93171 0.94129 0.87901 1.22261 1.05123 0.93815 1.01038 1.87992 1.51975 1.54953 1.31685 1.22845 0.88873 0.88498 0.94317 1.22572 0.93928 0.94932 0.97727 1.61466 1.36422 1.27782 1.03552 1.19446 0.83169 0.92362 0.96915 0.93978 1.22437 1.01850 0.98008 0.99998 1.21805 1.36914 0.92726 1.10058 0.93663 1.25676 0.92925 1.02389 0.96184 1.70769 1.41446 1.29561 1.12163 0.83534 0.76406 0.75084 0.74957 1.21769 1.21408 1.21716 1.23668 1.03113 0.95974 0.99592 1.23310 1.01379 0.96126 0.82027 1.89131 1.72113 1.42093 1.25883 1.23369 0.94923 0.84506 0.98826 0.91975 0.91914 0.93052 0.93012 0.88562 0.93480 0.92506 0.91243 0.96416 0.86547 0.94017 0.96160 0.93330 0.91815 0.89788 0.90170 0.89301 0.92470 0.91331 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.56 37.16 0.36 -1.81 16 2 C 0.09 1.44 2.00 -26.73 -0.05 1.38 16 3 C -0.17 -3.28 9.38 37.16 0.35 -2.93 16 4 O -0.35 -6.38 9.60 -35.23 -0.34 -6.71 16 5 C 0.10 1.55 0.81 -89.05 -0.07 1.48 16 6 C 0.04 0.70 3.54 -3.82 -0.01 0.69 16 7 N -0.66 -14.03 5.78 -107.95 -0.62 -14.65 16 8 C 0.19 4.44 2.50 -68.87 -0.17 4.27 16 9 H 0.04 1.09 5.98 -51.93 -0.31 0.78 16 10 C -0.16 -3.38 9.16 37.16 0.34 -3.04 16 11 C -0.58 -15.59 8.64 -34.44 -0.30 -15.88 16 12 H 0.05 1.25 7.82 -52.48 -0.41 0.84 16 13 C 0.03 0.95 5.45 -17.82 -0.10 0.85 16 14 N -0.90 -25.74 13.20 55.43 0.73 -25.00 16 15 Si 1.07 25.22 29.91 -169.99 -5.08 20.14 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 19 C -0.19 -2.46 5.47 -25.16 -0.14 -2.59 16 20 C 0.05 0.60 7.63 37.94 0.29 0.89 16 21 O -0.37 -5.79 11.65 -35.23 -0.41 -6.20 16 22 C 0.06 0.94 5.91 37.93 0.22 1.16 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 26 H 0.05 0.82 6.06 -51.93 -0.31 0.51 16 27 H 0.10 2.21 4.59 -51.93 -0.24 1.97 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.36 6.03 -51.93 -0.31 1.05 16 31 H 0.02 0.31 7.37 -51.93 -0.38 -0.08 16 32 H 0.32 6.44 7.30 -39.30 -0.29 6.15 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.02 0.36 7.37 -51.93 -0.38 -0.02 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.27 7.62 5.32 -40.82 -0.22 7.40 16 37 H 0.08 1.09 7.10 -51.93 -0.37 0.72 16 38 H 0.08 0.97 7.73 -51.93 -0.40 0.57 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 42 H 0.11 1.73 8.09 -51.93 -0.42 1.31 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -29.01 323.24 -7.19 -36.20 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.05 Total: 6.88 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 0.71 Total: -15.52 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.11 Total: -39.65 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.75 Total: -12.92 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.01 -7.19 -36.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722359530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.951 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds