Wall clock time and date at job start Mon Mar 30 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47126 * 2 1 4 4 O 1.42893 * 109.47216 * 119.99656 * 2 1 3 5 5 C 1.42900 * 113.99849 * 133.67130 * 4 2 1 6 6 C 1.53001 * 110.45632 * 63.56276 * 5 4 2 7 7 N 1.46900 * 109.47146 * 62.81791 * 6 5 4 8 8 C 1.46894 * 110.99790 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47413 * 35.00385 * 8 7 6 10 10 C 1.52999 * 109.47421 * 274.99730 * 8 7 6 11 11 C 1.50702 * 109.47203 * 154.99938 * 8 7 6 12 12 H 1.08004 * 120.00334 * 88.19871 * 11 8 7 13 13 C 1.37880 * 120.00239 * 268.20389 * 11 8 7 14 14 N 1.31520 * 119.99705 * 355.11882 * 13 11 8 15 15 Si 1.86803 * 120.00235 * 175.11643 * 13 11 8 16 16 H 1.48501 * 109.46879 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.46854 * 240.00042 * 15 13 11 18 18 H 1.48493 * 109.47069 * 119.99850 * 15 13 11 19 19 C 1.54514 * 110.51260 * 300.95835 * 5 4 2 20 20 C 1.54482 * 104.06001 * 241.21694 * 19 5 4 21 21 O 1.44423 * 104.80641 * 23.97912 * 20 19 5 22 22 C 1.44431 * 105.27381 * 319.48706 * 21 20 19 23 23 H 1.09003 * 109.47004 * 300.00088 * 1 2 3 24 24 H 1.08998 * 109.46977 * 59.99645 * 1 2 3 25 25 H 1.08989 * 109.47163 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46732 * 240.00364 * 2 1 3 27 27 H 1.09001 * 109.47218 * 184.38817 * 3 2 1 28 28 H 1.09006 * 109.47404 * 304.38938 * 3 2 1 29 29 H 1.08994 * 109.47684 * 64.38653 * 3 2 1 30 30 H 1.09000 * 109.47141 * 302.81735 * 6 5 4 31 31 H 1.09000 * 109.47431 * 182.82298 * 6 5 4 32 32 H 1.00893 * 110.99774 * 56.04709 * 7 6 5 33 33 H 1.08999 * 109.46917 * 295.89190 * 10 8 7 34 34 H 1.08999 * 109.46948 * 55.88693 * 10 8 7 35 35 H 1.08991 * 109.47620 * 175.88942 * 10 8 7 36 36 H 0.96997 * 120.00113 * 5.37191 * 14 13 11 37 37 H 1.08999 * 110.50982 * 359.85910 * 19 5 4 38 38 H 1.08996 * 110.51046 * 122.57673 * 19 5 4 39 39 H 1.08998 * 110.37361 * 142.80869 * 20 19 5 40 40 H 1.09004 * 110.37268 * 265.14401 * 20 19 5 41 41 H 1.09001 * 110.37436 * 281.67986 * 22 21 20 42 42 H 1.08994 * 110.37027 * 159.34385 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 3.0500 -1.6150 0.9090 6 6 4.2905 -0.9029 0.3659 7 7 4.8036 0.0283 1.3796 8 6 5.9971 0.7321 0.8917 9 1 5.8982 0.9167 -0.1780 10 6 7.2367 -0.1272 1.1486 11 6 6.1374 2.0456 1.6171 12 1 6.6790 2.0920 2.5504 13 6 5.5742 3.1882 1.0895 14 7 4.9980 3.1520 -0.0921 15 14 5.6297 4.7876 2.0531 16 1 6.3281 4.5636 3.3443 17 1 4.2451 5.2561 2.3146 18 1 6.3593 5.8142 1.2666 19 6 2.5695 -2.6978 -0.0831 20 6 2.6835 -4.0154 0.7152 21 8 2.6110 -3.6148 2.1009 22 6 3.3974 -2.4066 2.1893 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1272 1.4435 -0.0786 28 1 1.6139 1.9786 -0.8481 29 1 1.7424 1.9332 0.9266 30 1 4.0264 -0.3495 -0.5353 31 1 5.0576 -1.6398 0.1280 32 1 4.9951 -0.4507 2.2467 33 1 7.3769 -0.2508 2.2224 34 1 7.1037 -1.1045 0.6847 35 1 8.1124 0.3614 0.7217 36 1 4.8998 2.3070 -0.5582 37 1 1.5352 -2.5163 -0.3750 38 1 3.2158 -2.7257 -0.9604 39 1 1.8562 -4.6810 0.4690 40 1 3.6371 -4.5021 0.5102 41 1 4.4605 -2.6464 2.2104 42 1 3.1185 -1.8364 3.0753 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722359530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:42 Heat of formation + Delta-G solvation = -117.949108 kcal Electronic energy + Delta-G solvation = -21271.123774 eV Core-core repulsion = 18250.220099 eV Total energy + Delta-G solvation = -3020.903675 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28416 -38.52918 -37.66866 -34.71949 -33.48974 -32.25656 -31.07754 -29.01029 -27.99451 -26.62648 -25.72378 -23.79711 -22.58936 -22.29237 -20.73280 -18.86112 -18.32357 -17.13717 -16.78921 -16.14003 -16.07331 -15.84046 -15.59116 -15.21786 -15.03465 -14.70236 -14.32032 -14.02870 -13.71327 -13.40985 -13.20045 -13.13048 -13.04792 -12.90617 -12.65320 -12.60363 -12.53876 -12.34612 -11.95154 -11.90704 -11.70533 -11.57543 -11.35264 -10.77916 -10.70542 -10.41464 -10.28236 -8.80388 -8.41413 -6.15494 1.55717 1.64306 1.79058 2.60211 2.64542 2.94906 3.20721 3.51642 3.70832 3.80666 4.02938 4.06015 4.13307 4.23190 4.32313 4.35622 4.39460 4.43320 4.54854 4.64992 4.66303 4.72692 4.75887 4.76390 4.78494 4.85925 4.97459 5.00073 5.02518 5.06739 5.14778 5.31828 5.33246 5.70246 5.73357 6.07121 6.31998 6.45241 6.64085 6.87888 6.90941 7.65113 8.94420 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021463 B = 0.007397 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.230941 B = 3784.327917 C = 4593.029764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.088 3.912 3 C -0.160 4.160 4 O -0.369 6.369 5 C 0.091 3.909 6 C 0.048 3.952 7 N -0.672 5.672 8 C 0.190 3.810 9 H 0.015 0.985 10 C -0.154 4.154 11 C -0.590 4.590 12 H 0.034 0.966 13 C -0.011 4.011 14 N -0.922 5.922 15 Si 1.110 2.890 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.282 1.282 19 C -0.179 4.179 20 C 0.046 3.954 21 O -0.390 6.390 22 C 0.064 3.936 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.323 0.677 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.261 0.739 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 -12.403 -1.719 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 C -0.218 4.218 4 O -0.288 6.288 5 C 0.051 3.949 6 C -0.082 4.082 7 N -0.304 5.304 8 C 0.083 3.917 9 H 0.034 0.966 10 C -0.213 4.213 11 C -0.629 4.629 12 H 0.052 0.948 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.935 3.065 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.208 1.208 19 C -0.217 4.217 20 C -0.030 4.030 21 O -0.309 6.309 22 C -0.013 4.013 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.751 -10.377 -1.631 12.487 hybrid contribution 1.402 -1.840 -0.302 2.333 sum -5.349 -12.217 -1.933 13.476 Atomic orbital electron populations 1.21957 0.93056 1.02690 1.02647 1.22032 0.94903 0.91948 0.88037 1.22187 1.03207 0.96325 1.00056 1.87976 1.52441 1.55650 1.32773 1.22937 0.87566 0.88725 0.95684 1.22497 0.95177 0.94387 0.96140 1.61079 1.35381 1.29348 1.04554 1.19246 0.85371 0.92270 0.94806 0.96644 1.22279 0.99966 0.98562 1.00492 1.22106 1.36519 0.94635 1.09668 0.94795 1.26776 0.92662 1.05351 0.96477 1.70848 1.42926 1.29201 1.12993 0.83011 0.76442 0.72540 0.74531 1.20514 1.21510 1.20823 1.23632 1.03596 0.95132 0.99342 1.23548 1.03430 0.95856 0.80136 1.89118 1.72176 1.41705 1.27858 1.23289 0.95529 0.84626 0.97869 0.92924 0.90086 0.91360 0.91798 0.91593 0.92528 0.94987 0.93047 0.94867 0.85916 0.93534 0.93664 0.93881 0.92696 0.89263 0.88757 0.86985 0.90716 0.90251 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.56 71.98 0.69 -3.17 16 2 C 0.09 2.89 2.00 30.59 0.06 2.95 16 3 C -0.16 -6.48 9.38 71.98 0.68 -5.81 16 4 O -0.37 -13.30 9.60 -148.98 -1.43 -14.73 16 5 C 0.09 2.83 0.81 -9.78 -0.01 2.82 16 6 C 0.05 1.70 3.54 86.30 0.31 2.01 16 7 N -0.67 -28.57 5.78 -495.46 -2.86 -31.43 16 8 C 0.19 9.10 2.50 44.17 0.11 9.21 16 9 H 0.02 0.82 5.98 -2.39 -0.01 0.81 16 10 C -0.15 -6.19 9.16 71.98 0.66 -5.53 16 11 C -0.59 -32.42 8.64 25.60 0.22 -32.20 16 12 H 0.03 1.89 7.82 -2.91 -0.02 1.87 16 13 C -0.01 -0.63 5.45 84.65 0.46 -0.17 16 14 N -0.92 -53.84 13.20 21.45 0.28 -53.55 16 15 Si 1.11 51.39 29.91 68.60 2.05 53.44 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 C -0.18 -4.21 5.47 31.61 0.17 -4.04 16 20 C 0.05 0.98 7.63 72.49 0.55 1.54 16 21 O -0.39 -11.14 11.65 -148.98 -1.74 -12.88 16 22 C 0.06 1.89 5.91 72.49 0.43 2.31 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.93 6.06 -2.39 -0.01 1.91 16 27 H 0.07 3.10 4.59 -2.39 -0.01 3.09 16 28 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 2.01 6.03 -2.39 -0.01 2.00 16 31 H 0.03 1.08 7.37 -2.39 -0.02 1.06 16 32 H 0.32 12.99 7.30 -89.70 -0.65 12.34 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.57 7.37 -2.39 -0.02 1.55 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.26 15.31 5.32 -92.71 -0.49 14.82 16 37 H 0.09 2.03 7.10 -2.39 -0.02 2.01 16 38 H 0.09 1.96 7.73 -2.39 -0.02 1.94 16 39 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.08 2.15 7.68 -2.39 -0.02 2.13 16 42 H 0.09 2.96 8.09 -2.39 -0.02 2.94 16 Total: -1.00 -63.12 323.24 1.25 -61.88 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.61 Total: 27.35 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.33 Total: -30.07 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.58 Total: -84.99 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -3.17 Total: -27.61 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -63.12 1.25 -61.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722359530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.071 kcal (2) G-P(sol) polarization free energy of solvation -63.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds