Wall clock time and date at job start Mon Mar 30 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 O 1.42901 * 109.47100 * 119.99432 * 2 1 3 5 5 C 1.42910 * 113.99444 * 117.32311 * 4 2 1 6 6 C 1.52996 * 110.45582 * 301.29714 * 5 4 2 7 7 N 1.46897 * 109.47060 * 301.47359 * 6 5 4 8 8 C 1.46907 * 110.99996 * 183.87267 * 7 6 5 9 9 H 1.09000 * 109.46575 * 34.88929 * 8 7 6 10 10 C 1.52997 * 109.47172 * 274.88788 * 8 7 6 11 11 C 1.50698 * 109.46963 * 154.88524 * 8 7 6 12 12 H 1.08001 * 120.00144 * 0.02562 * 11 8 7 13 13 C 1.37874 * 119.99715 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00316 * 0.02562 * 13 11 8 15 15 Si 1.86804 * 120.00227 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.46595 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47047 * 119.99910 * 15 13 11 18 18 H 1.48494 * 109.47125 * 240.00467 * 15 13 11 19 19 C 1.54516 * 110.50862 * 63.90340 * 5 4 2 20 20 C 1.54472 * 104.05974 * 118.78128 * 19 5 4 21 21 O 1.44419 * 104.80732 * 23.97675 * 20 19 5 22 22 C 1.44783 * 105.29634 * 319.44912 * 21 20 19 23 23 H 1.09001 * 109.47057 * 299.99958 * 1 2 3 24 24 H 1.09000 * 109.46991 * 60.00161 * 1 2 3 25 25 H 1.08997 * 109.47018 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47302 * 240.00122 * 2 1 3 27 27 H 1.09006 * 109.47381 * 181.81195 * 3 2 1 28 28 H 1.09004 * 109.47270 * 301.81321 * 3 2 1 29 29 H 1.09003 * 109.47218 * 61.80977 * 3 2 1 30 30 H 1.08997 * 109.47536 * 61.47963 * 6 5 4 31 31 H 1.09005 * 109.46700 * 181.47788 * 6 5 4 32 32 H 1.00904 * 111.00057 * 307.82557 * 7 6 5 33 33 H 1.09002 * 109.47039 * 59.99620 * 10 8 7 34 34 H 1.08994 * 109.47255 * 179.97438 * 10 8 7 35 35 H 1.08996 * 109.46965 * 300.00353 * 10 8 7 36 36 H 0.97001 * 120.00853 * 179.97438 * 14 13 11 37 37 H 1.09000 * 110.50872 * 237.42333 * 19 5 4 38 38 H 1.09000 * 110.51069 * 0.13157 * 19 5 4 39 39 H 1.09004 * 110.37489 * 142.80842 * 20 19 5 40 40 H 1.09000 * 110.37124 * 265.13944 * 20 19 5 41 41 H 1.08996 * 110.42808 * 281.78043 * 22 21 20 42 42 H 1.09001 * 110.49074 * 159.32183 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.7651 -1.8522 0.8885 6 6 1.9272 -2.8506 0.0873 7 7 0.7174 -3.1946 0.8462 8 6 -0.0674 -4.2220 0.1484 9 1 0.6069 -4.9109 -0.3604 10 6 -0.9840 -3.5537 -0.8782 11 6 -0.9016 -4.9815 1.1475 12 1 -0.8539 -4.7264 2.1959 13 6 -1.7265 -6.0015 0.7230 14 7 -1.7849 -6.3119 -0.5536 15 14 -2.7611 -6.9427 1.9613 16 1 -2.5153 -6.4037 3.3230 17 1 -4.1987 -6.7924 1.6209 18 1 -2.3913 -8.3803 1.9243 19 6 4.0593 -1.4948 0.1238 20 6 5.1920 -1.9660 1.0624 21 8 4.5893 -2.9902 1.8830 22 6 3.2661 -2.4957 2.2005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1296 1.4428 -0.0325 28 1 1.6503 1.9657 -0.8733 29 1 1.7034 1.9469 0.9058 30 1 1.6437 -2.4046 -0.8659 31 1 2.5117 -3.7528 -0.0932 32 1 0.9498 -3.4909 1.7823 33 1 -0.3806 -3.0043 -1.6008 34 1 -1.5659 -4.3160 -1.3963 35 1 -1.6581 -2.8648 -0.3694 36 1 -2.3649 -7.0297 -0.8523 37 1 4.1022 -2.0296 -0.8251 38 1 4.1215 -0.4190 -0.0399 39 1 6.0170 -2.3807 0.4831 40 1 5.5401 -1.1394 1.6818 41 1 3.3189 -1.7495 2.9932 42 1 2.6121 -3.3168 2.4941 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722359534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:51 Heat of formation + Delta-G solvation = -95.471823 kcal Electronic energy + Delta-G solvation = -20931.062832 eV Core-core repulsion = 17911.133846 eV Total energy + Delta-G solvation = -3019.928987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09315 -37.40378 -35.66245 -33.14143 -32.14607 -30.85566 -29.41208 -27.47836 -26.94540 -25.41478 -24.47062 -22.46795 -21.25697 -19.82273 -19.46685 -17.35024 -16.71861 -15.98184 -15.18759 -15.02627 -14.82075 -14.42848 -14.16008 -13.84704 -13.71934 -12.98335 -12.77615 -12.59137 -12.28703 -12.11372 -11.98440 -11.77963 -11.47954 -11.32370 -11.23716 -11.09477 -10.87394 -10.69872 -10.65245 -10.29237 -10.14277 -10.10004 -9.92246 -9.65102 -9.18213 -8.79627 -8.47458 -7.24472 -6.02700 -4.08890 3.29274 3.37190 3.41660 3.71527 4.08355 4.40474 4.62077 4.78962 4.92313 5.11518 5.15123 5.24256 5.28839 5.38905 5.43898 5.53353 5.62194 5.65449 5.73532 5.84522 5.87444 6.00270 6.03925 6.09511 6.11799 6.23807 6.27985 6.44804 6.73100 6.84631 6.89364 7.12288 7.21902 7.47175 7.60548 7.78687 7.89799 8.26348 8.37235 8.66236 9.01745 9.57328 11.03648 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.006101 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.929684 B = 4588.345961 C = 5292.871641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 C -0.160 4.160 4 O -0.352 6.352 5 C 0.091 3.909 6 C 0.045 3.955 7 N -0.675 5.675 8 C 0.211 3.789 9 H -0.001 1.001 10 C -0.122 4.122 11 C -0.516 4.516 12 H 0.060 0.940 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.183 4.183 20 C 0.048 3.952 21 O -0.371 6.371 22 C 0.059 3.941 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.329 0.671 33 H 0.001 0.999 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.260 0.740 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.304 11.866 0.070 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.031 3.969 3 C -0.217 4.217 4 O -0.271 6.271 5 C 0.051 3.949 6 C -0.086 4.086 7 N -0.308 5.308 8 C 0.104 3.896 9 H 0.017 0.983 10 C -0.181 4.181 11 C -0.555 4.555 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.222 4.222 20 C -0.028 4.028 21 O -0.290 6.290 22 C -0.018 4.018 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.148 0.852 33 H 0.020 0.980 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.889 12.116 -0.055 15.639 hybrid contribution -0.119 -1.153 0.267 1.190 sum 9.770 10.963 0.212 14.686 Atomic orbital electron populations 1.22197 0.94421 1.05195 1.00731 1.21916 0.94916 0.91580 0.88458 1.22153 1.00735 0.96665 1.02192 1.87932 1.70628 1.37828 1.30745 1.22916 0.89936 0.86699 0.95363 1.22467 0.92258 0.96493 0.97335 1.60738 1.17751 1.47244 1.05034 1.19125 0.91153 0.86681 0.92668 0.98292 1.21718 0.99284 0.99477 0.97580 1.21295 1.24703 1.15702 0.93760 0.92141 1.24913 0.96844 0.96982 0.95258 1.69903 1.39093 1.30138 1.13822 0.86476 0.80070 0.79538 0.81537 1.19722 1.21008 1.21132 1.23632 0.95704 1.02637 1.00207 1.23304 0.95916 0.91329 0.92301 1.89228 1.27814 1.41606 1.70329 1.23391 0.83780 0.99316 0.95283 0.92679 0.93031 0.88908 0.92279 0.92966 0.91909 0.92037 0.91397 0.94960 0.85185 0.97960 0.90180 0.94856 0.93016 0.90162 0.89734 0.89244 0.92299 0.91098 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 9.56 37.16 0.36 -2.18 16 2 C 0.09 1.24 2.10 -26.73 -0.06 1.18 16 3 C -0.16 -1.79 9.51 37.16 0.35 -1.43 16 4 O -0.35 -5.51 9.50 -35.23 -0.33 -5.85 16 5 C 0.09 1.38 0.79 -89.05 -0.07 1.31 16 6 C 0.04 0.80 4.04 -3.83 -0.02 0.79 16 7 N -0.68 -14.08 5.42 -107.95 -0.59 -14.66 16 8 C 0.21 5.28 2.60 -68.86 -0.18 5.10 16 9 H 0.00 -0.01 7.74 -51.93 -0.40 -0.42 16 10 C -0.12 -2.99 8.61 37.16 0.32 -2.67 16 11 C -0.52 -14.08 8.59 -34.44 -0.30 -14.37 16 12 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 15 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.18 -2.26 5.71 -25.16 -0.14 -2.41 16 20 C 0.05 0.57 7.63 37.93 0.29 0.86 16 21 O -0.37 -5.66 11.66 -35.23 -0.41 -6.07 16 22 C 0.06 0.89 6.79 37.93 0.26 1.15 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 1.70 6.39 -51.93 -0.33 1.36 16 26 H 0.06 0.82 5.85 -51.93 -0.30 0.52 16 27 H 0.05 0.53 7.12 -51.93 -0.37 0.16 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.23 6.03 -51.93 -0.31 0.91 16 31 H 0.03 0.62 7.96 -51.93 -0.41 0.20 16 32 H 0.33 6.86 6.25 -39.29 -0.25 6.62 16 33 H 0.00 0.03 7.53 -51.93 -0.39 -0.36 16 34 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 35 H 0.03 0.80 7.79 -51.93 -0.40 0.39 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 38 H 0.08 0.94 6.42 -51.93 -0.33 0.60 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 42 H 0.10 1.66 6.18 -51.93 -0.32 1.34 16 LS Contribution 321.94 15.07 4.85 4.85 Total: -1.00 -28.73 321.94 -7.19 -35.92 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.04 Total: 5.36 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 0.72 Total: -11.06 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.04 Total: -39.47 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.75 Total: -11.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.73 -7.19 -35.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722359534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.551 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds