Wall clock time and date at job start Mon Mar 30 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 O 1.42901 * 109.47100 * 119.99432 * 2 1 3 5 5 C 1.42910 * 113.99444 * 117.32311 * 4 2 1 6 6 C 1.52996 * 110.45582 * 301.29714 * 5 4 2 7 7 N 1.46897 * 109.47060 * 301.47359 * 6 5 4 8 8 C 1.46907 * 110.99996 * 183.87267 * 7 6 5 9 9 H 1.09000 * 109.46575 * 34.88929 * 8 7 6 10 10 C 1.52997 * 109.47172 * 274.88788 * 8 7 6 11 11 C 1.50698 * 109.46963 * 154.88524 * 8 7 6 12 12 H 1.08001 * 120.00144 * 0.02562 * 11 8 7 13 13 C 1.37874 * 119.99715 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00316 * 0.02562 * 13 11 8 15 15 Si 1.86804 * 120.00227 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.46595 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47047 * 119.99910 * 15 13 11 18 18 H 1.48494 * 109.47125 * 240.00467 * 15 13 11 19 19 C 1.54516 * 110.50862 * 63.90340 * 5 4 2 20 20 C 1.54472 * 104.05974 * 118.78128 * 19 5 4 21 21 O 1.44419 * 104.80732 * 23.97675 * 20 19 5 22 22 C 1.44783 * 105.29634 * 319.44912 * 21 20 19 23 23 H 1.09001 * 109.47057 * 299.99958 * 1 2 3 24 24 H 1.09000 * 109.46991 * 60.00161 * 1 2 3 25 25 H 1.08997 * 109.47018 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47302 * 240.00122 * 2 1 3 27 27 H 1.09006 * 109.47381 * 181.81195 * 3 2 1 28 28 H 1.09004 * 109.47270 * 301.81321 * 3 2 1 29 29 H 1.09003 * 109.47218 * 61.80977 * 3 2 1 30 30 H 1.08997 * 109.47536 * 61.47963 * 6 5 4 31 31 H 1.09005 * 109.46700 * 181.47788 * 6 5 4 32 32 H 1.00904 * 111.00057 * 307.82557 * 7 6 5 33 33 H 1.09002 * 109.47039 * 59.99620 * 10 8 7 34 34 H 1.08994 * 109.47255 * 179.97438 * 10 8 7 35 35 H 1.08996 * 109.46965 * 300.00353 * 10 8 7 36 36 H 0.97001 * 120.00853 * 179.97438 * 14 13 11 37 37 H 1.09000 * 110.50872 * 237.42333 * 19 5 4 38 38 H 1.09000 * 110.51069 * 0.13157 * 19 5 4 39 39 H 1.09004 * 110.37489 * 142.80842 * 20 19 5 40 40 H 1.09000 * 110.37124 * 265.13944 * 20 19 5 41 41 H 1.08996 * 110.42808 * 281.78043 * 22 21 20 42 42 H 1.09001 * 110.49074 * 159.32183 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.7651 -1.8522 0.8885 6 6 1.9272 -2.8506 0.0873 7 7 0.7174 -3.1946 0.8462 8 6 -0.0674 -4.2220 0.1484 9 1 0.6069 -4.9109 -0.3604 10 6 -0.9840 -3.5537 -0.8782 11 6 -0.9016 -4.9815 1.1475 12 1 -0.8539 -4.7264 2.1959 13 6 -1.7265 -6.0015 0.7230 14 7 -1.7849 -6.3119 -0.5536 15 14 -2.7611 -6.9427 1.9613 16 1 -2.5153 -6.4037 3.3230 17 1 -4.1987 -6.7924 1.6209 18 1 -2.3913 -8.3803 1.9243 19 6 4.0593 -1.4948 0.1238 20 6 5.1920 -1.9660 1.0624 21 8 4.5893 -2.9902 1.8830 22 6 3.2661 -2.4957 2.2005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1296 1.4428 -0.0325 28 1 1.6503 1.9657 -0.8733 29 1 1.7034 1.9469 0.9058 30 1 1.6437 -2.4046 -0.8659 31 1 2.5117 -3.7528 -0.0932 32 1 0.9498 -3.4909 1.7823 33 1 -0.3806 -3.0043 -1.6008 34 1 -1.5659 -4.3160 -1.3963 35 1 -1.6581 -2.8648 -0.3694 36 1 -2.3649 -7.0297 -0.8523 37 1 4.1022 -2.0296 -0.8251 38 1 4.1215 -0.4190 -0.0399 39 1 6.0170 -2.3807 0.4831 40 1 5.5401 -1.1394 1.6818 41 1 3.3189 -1.7495 2.9932 42 1 2.6121 -3.3168 2.4941 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722359534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:50 Heat of formation + Delta-G solvation = -114.862981 kcal Electronic energy + Delta-G solvation = -20931.903696 eV Core-core repulsion = 17911.133846 eV Total energy + Delta-G solvation = -3020.769850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26790 -38.54973 -37.44743 -34.74501 -33.66752 -32.01375 -30.95290 -28.93648 -28.03272 -27.35284 -26.05059 -23.59612 -22.39525 -21.68571 -20.72837 -18.84503 -18.20038 -17.42341 -16.71320 -16.38254 -16.13923 -15.85364 -15.44209 -15.27844 -15.10811 -14.57311 -14.21623 -13.88078 -13.48351 -13.40126 -13.30958 -13.11562 -12.97578 -12.86886 -12.68520 -12.51428 -12.41162 -12.24941 -12.14169 -12.10395 -11.85082 -11.60952 -11.21022 -10.90440 -10.76990 -10.58982 -10.34681 -9.03024 -8.14280 -6.28090 1.40196 1.42064 1.53861 2.40426 2.58393 3.00011 3.14523 3.45982 3.58198 3.77531 3.91967 4.11551 4.18902 4.24971 4.33144 4.39085 4.51958 4.59420 4.68511 4.73552 4.78769 4.84702 4.86282 4.91058 4.98818 5.02580 5.05692 5.06741 5.12410 5.21715 5.39400 5.46109 5.61911 5.65887 5.70363 5.86356 6.21943 6.43059 6.45655 6.76343 6.98125 7.42439 8.91490 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.006101 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.929684 B = 4588.345961 C = 5292.871641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.084 3.916 3 C -0.152 4.152 4 O -0.364 6.364 5 C 0.095 3.905 6 C 0.050 3.950 7 N -0.668 5.668 8 C 0.217 3.783 9 H -0.036 1.036 10 C -0.106 4.106 11 C -0.535 4.535 12 H 0.058 0.942 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.961 3.039 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.281 1.281 19 C -0.176 4.176 20 C 0.045 3.955 21 O -0.392 6.392 22 C 0.060 3.940 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.328 0.672 33 H 0.019 0.981 34 H 0.054 0.946 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.225 13.298 0.400 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.027 3.973 3 C -0.210 4.210 4 O -0.284 6.284 5 C 0.054 3.946 6 C -0.080 4.080 7 N -0.299 5.299 8 C 0.109 3.891 9 H -0.018 1.018 10 C -0.165 4.165 11 C -0.574 4.574 12 H 0.076 0.924 13 C -0.185 4.185 14 N -0.557 5.557 15 Si 0.787 3.213 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.207 1.207 19 C -0.214 4.214 20 C -0.031 4.031 21 O -0.311 6.311 22 C -0.017 4.017 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.147 0.853 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.824 13.566 0.275 17.357 hybrid contribution -0.380 -1.574 0.129 1.624 sum 10.444 11.992 0.404 15.908 Atomic orbital electron populations 1.22162 0.95621 1.03068 1.01549 1.22062 0.94052 0.93290 0.87891 1.22088 1.01601 0.94364 1.02906 1.87924 1.70964 1.37666 1.31809 1.22814 0.90516 0.85882 0.95357 1.22482 0.91241 0.96767 0.97548 1.60655 1.19173 1.45160 1.04927 1.18918 0.90868 0.86909 0.92438 1.01804 1.21492 0.98942 0.98532 0.97500 1.21604 1.25277 1.16414 0.94060 0.92412 1.25707 0.97956 0.97855 0.97009 1.70025 1.39701 1.30592 1.15425 0.85460 0.78384 0.78129 0.79368 1.19147 1.20517 1.20683 1.23595 0.93935 1.03919 0.99960 1.23559 0.95955 0.91358 0.92254 1.89206 1.27721 1.43147 1.71054 1.23318 0.83851 0.98895 0.95652 0.92915 0.91215 0.92372 0.92282 0.91582 0.90216 0.92253 0.91537 0.96435 0.85287 0.96195 0.92722 0.95154 0.92863 0.89936 0.87794 0.87250 0.90404 0.89964 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.87 9.56 71.98 0.69 -4.18 16 2 C 0.08 2.19 2.10 30.60 0.06 2.26 16 3 C -0.15 -2.93 9.51 71.98 0.68 -2.24 16 4 O -0.36 -10.86 9.50 -148.98 -1.42 -12.27 16 5 C 0.09 2.76 0.79 -9.78 -0.01 2.76 16 6 C 0.05 1.79 4.04 86.30 0.35 2.14 16 7 N -0.67 -28.45 5.42 -495.45 -2.68 -31.13 16 8 C 0.22 11.17 2.60 44.17 0.11 11.29 16 9 H -0.04 -2.05 7.74 -2.39 -0.02 -2.06 16 10 C -0.11 -5.31 8.61 71.98 0.62 -4.69 16 11 C -0.54 -29.77 8.59 25.60 0.22 -29.55 16 12 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 13 C 0.01 0.77 5.30 84.65 0.45 1.22 16 14 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 15 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 C -0.18 -3.91 5.71 31.61 0.18 -3.73 16 20 C 0.04 0.94 7.63 72.48 0.55 1.49 16 21 O -0.39 -11.48 11.66 -148.98 -1.74 -13.21 16 22 C 0.06 1.77 6.79 72.49 0.49 2.26 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 2.11 6.39 -2.39 -0.02 2.10 16 26 H 0.06 1.53 5.85 -2.39 -0.01 1.52 16 27 H 0.07 1.10 7.12 -2.38 -0.02 1.08 16 28 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 2.40 6.03 -2.39 -0.01 2.39 16 31 H 0.02 0.69 7.96 -2.38 -0.02 0.67 16 32 H 0.33 14.07 6.25 -89.69 -0.56 13.51 16 33 H 0.02 0.87 7.53 -2.39 -0.02 0.85 16 34 H 0.05 3.01 6.07 -2.39 -0.01 2.99 16 35 H 0.03 1.48 7.79 -2.39 -0.02 1.46 16 36 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.08 1.80 7.73 -2.39 -0.02 1.79 16 38 H 0.10 1.92 6.42 -2.39 -0.02 1.91 16 39 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 42 H 0.09 2.81 6.18 -2.39 -0.01 2.80 16 Total: -1.00 -62.05 321.94 1.27 -60.77 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.43 Total: 23.85 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 4.41 Total: -20.96 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.44 Total: -84.24 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -3.15 Total: -25.49 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -62.05 1.27 -60.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722359534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.089 kcal (2) G-P(sol) polarization free energy of solvation -62.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds