Wall clock time and date at job start Mon Mar 30 2020 04:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47036 * 2 1 4 4 O 1.42903 * 109.47291 * 119.99515 * 2 1 3 5 5 C 1.42895 * 113.99836 * 118.32111 * 4 2 1 6 6 C 1.52996 * 110.44258 * 296.16416 * 5 4 2 7 7 N 1.46900 * 109.47040 * 292.79246 * 6 5 4 8 8 C 1.46903 * 110.99808 * 185.26596 * 7 6 5 9 9 C 1.52999 * 109.46849 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.46948 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00316 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00238 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99738 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00341 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.46984 * 269.99989 * 14 12 10 16 16 H 1.48501 * 109.47019 * 149.99576 * 14 12 10 17 17 H 1.48502 * 109.46858 * 30.00123 * 14 12 10 18 18 C 1.54819 * 110.59987 * 58.79196 * 5 4 2 19 19 C 1.54989 * 102.09357 * 97.84501 * 18 5 4 20 20 O 1.44376 * 103.49548 * 37.02730 * 19 18 5 21 21 C 1.43750 * 106.96849 * 319.93925 * 20 19 18 22 22 H 1.08995 * 109.47642 * 294.95188 * 1 2 3 23 23 H 1.09008 * 109.46830 * 54.95307 * 1 2 3 24 24 H 1.09001 * 109.47153 * 174.94085 * 1 2 3 25 25 H 1.09003 * 109.47466 * 239.99954 * 2 1 3 26 26 H 1.08998 * 109.46889 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46802 * 299.99300 * 3 2 1 28 28 H 1.08989 * 109.47043 * 59.99536 * 3 2 1 29 29 H 1.08996 * 109.47013 * 172.78644 * 6 5 4 30 30 H 1.08999 * 109.47077 * 52.78822 * 6 5 4 31 31 H 1.00900 * 111.00193 * 61.30676 * 7 6 5 32 32 H 1.08994 * 109.47188 * 59.99585 * 8 7 6 33 33 H 1.09003 * 109.46731 * 299.99469 * 8 7 6 34 34 H 1.09002 * 109.46927 * 60.00225 * 9 8 7 35 35 H 1.08995 * 109.47370 * 299.99842 * 9 8 7 36 36 H 0.96998 * 119.99804 * 0.02562 * 13 12 10 37 37 H 1.09000 * 110.90537 * 216.04764 * 18 5 4 38 38 H 1.09003 * 110.89948 * 339.64459 * 18 5 4 39 39 H 1.09000 * 110.61755 * 278.52016 * 19 18 5 40 40 H 1.09002 * 110.75186 * 155.58957 * 19 18 5 41 41 H 1.09008 * 109.87489 * 267.08554 * 21 20 19 42 42 H 1.09002 * 109.99863 * 146.01292 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.7840 -1.8395 0.8881 6 6 1.9293 -2.8965 0.1858 7 7 0.9058 -3.3946 1.1143 8 6 0.1453 -4.4999 0.5159 9 6 -0.9082 -4.9913 1.5106 10 6 -1.6887 -6.1248 0.8966 11 1 -1.4563 -6.4613 -0.1030 12 6 -2.6996 -6.7323 1.6108 13 7 -2.9823 -6.3228 2.8282 14 14 -3.6666 -8.1377 0.8500 15 1 -4.8431 -7.5938 0.1253 16 1 -4.1267 -9.0585 1.9204 17 1 -2.7986 -8.8782 -0.1006 18 6 4.0170 -1.4782 0.0244 19 6 5.1371 -1.3632 1.0895 20 8 4.8156 -2.4096 2.0308 21 6 3.3866 -2.4091 2.1869 22 1 -0.3634 0.4335 0.9317 23 1 -0.3633 0.5902 -0.8414 24 1 -0.3633 -1.0237 -0.0906 25 1 1.8934 -0.5138 -0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 2.5638 -3.7233 -0.1333 30 1 1.4455 -2.4530 -0.6844 31 1 0.2912 -2.6503 1.4083 32 1 0.8237 -5.3175 0.2721 33 1 -0.3464 -4.1525 -0.3927 34 1 -1.5866 -4.1738 1.7548 35 1 -0.4162 -5.3388 2.4190 36 1 -2.4799 -5.5933 3.2235 37 1 4.2385 -2.2722 -0.6888 38 1 3.8680 -0.5276 -0.4877 39 1 5.1065 -0.3877 1.5748 40 1 6.1154 -1.5373 0.6415 41 1 3.1064 -1.7805 3.0323 42 1 3.0287 -3.4262 2.3468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722359595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:10 Heat of formation + Delta-G solvation = -109.294993 kcal Electronic energy + Delta-G solvation = -20272.228804 eV Core-core repulsion = 17251.700400 eV Total energy + Delta-G solvation = -3020.528404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38584 -37.65286 -35.88747 -33.54601 -32.76475 -31.20970 -29.84930 -28.05478 -27.35229 -25.13097 -23.52989 -22.51436 -21.51735 -20.91688 -19.92927 -17.54470 -16.73533 -16.36273 -15.91073 -15.17107 -14.99455 -14.62875 -14.31151 -14.20039 -13.75567 -13.60691 -13.13639 -12.78772 -12.68857 -12.57345 -12.34155 -12.24630 -11.76038 -11.70443 -11.50496 -11.45056 -11.09721 -10.97911 -10.85526 -10.59299 -10.18468 -10.11576 -9.92136 -9.67766 -9.51776 -8.57056 -8.31021 -7.96301 -6.34612 -4.03661 3.41475 3.43999 3.48154 3.63869 3.89094 4.23054 4.49384 4.57280 4.69661 4.76366 4.87362 4.95652 5.01666 5.05322 5.19492 5.34561 5.42839 5.43350 5.45907 5.52654 5.61104 5.66528 5.68012 5.73835 5.76295 5.86771 5.99940 6.11045 6.18081 6.20902 6.25113 6.72543 6.80708 7.19512 7.26272 7.49543 7.64482 7.83219 8.24980 8.48080 8.90370 9.68922 11.06608 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.004434 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.697044 B = 6313.553295 C = 6924.922372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.076 3.924 3 C -0.160 4.160 4 O -0.360 6.360 5 C 0.090 3.910 6 C 0.043 3.957 7 N -0.687 5.687 8 C 0.073 3.927 9 C 0.013 3.987 10 C -0.604 4.604 11 H 0.047 0.953 12 C 0.016 3.984 13 N -0.912 5.912 14 Si 1.072 2.928 15 H -0.289 1.289 16 H -0.284 1.284 17 H -0.289 1.289 18 C -0.184 4.184 19 C 0.051 3.949 20 O -0.377 6.377 21 C 0.068 3.932 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.341 0.659 32 H 0.060 0.940 33 H 0.015 0.985 34 H 0.004 0.996 35 H 0.017 0.983 36 H 0.270 0.730 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.358 14.661 -7.262 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 C -0.217 4.217 4 O -0.280 6.280 5 C 0.050 3.950 6 C -0.087 4.087 7 N -0.318 5.318 8 C -0.055 4.055 9 C -0.024 4.024 10 C -0.642 4.642 11 H 0.066 0.934 12 C -0.188 4.188 13 N -0.548 5.548 14 Si 0.900 3.100 15 H -0.215 1.215 16 H -0.209 1.209 17 H -0.215 1.215 18 C -0.222 4.222 19 C -0.025 4.025 20 O -0.296 6.296 21 C -0.009 4.009 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.159 0.841 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.022 0.978 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.665 13.082 -6.349 19.283 hybrid contribution 0.514 1.734 -1.463 2.326 sum 13.178 14.815 -7.812 21.312 Atomic orbital electron populations 1.22147 0.94712 1.02703 1.02650 1.22091 0.94393 0.92854 0.88789 1.22114 1.01255 0.95842 1.02499 1.88031 1.69683 1.39598 1.30674 1.22948 0.90281 0.85776 0.96041 1.22473 0.95447 0.96918 0.93852 1.60534 1.18280 1.12968 1.40033 1.22020 0.95304 0.91580 0.96572 1.19188 0.92523 0.95889 0.94849 1.22008 1.20169 1.19122 1.02945 0.93442 1.25833 0.96475 1.01150 0.95371 1.70736 1.41680 1.27994 1.14430 0.83506 0.75643 0.75598 0.75213 1.21540 1.20939 1.21523 1.23818 0.96021 1.03192 0.99154 1.23437 0.98191 0.91806 0.89099 1.88909 1.22160 1.54435 1.64111 1.23123 0.79246 1.03448 0.95082 0.91483 0.91677 0.92206 0.91812 0.92461 0.91673 0.91702 0.90180 0.95277 0.84066 0.92145 0.96627 0.97764 0.96446 0.91938 0.89599 0.89621 0.92145 0.89122 0.91311 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.56 37.16 0.36 -1.48 16 2 C 0.08 0.82 1.91 -26.73 -0.05 0.77 16 3 C -0.16 -1.39 9.45 37.16 0.35 -1.04 16 4 O -0.36 -4.71 9.35 -35.23 -0.33 -5.04 16 5 C 0.09 1.15 0.74 -89.09 -0.07 1.08 16 6 C 0.04 0.62 4.46 -3.83 -0.02 0.61 16 7 N -0.69 -12.14 5.56 -113.78 -0.63 -12.77 16 8 C 0.07 1.55 5.62 -3.82 -0.02 1.53 16 9 C 0.01 0.34 4.54 -27.89 -0.13 0.21 16 10 C -0.60 -17.46 9.11 -34.44 -0.31 -17.78 16 11 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 12 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 13 N -0.91 -28.39 13.65 55.43 0.76 -27.64 16 14 Si 1.07 25.63 29.90 -169.99 -5.08 20.55 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 18 C -0.18 -1.89 5.89 -24.72 -0.15 -2.03 16 19 C 0.05 0.54 7.72 38.21 0.29 0.84 16 20 O -0.38 -5.30 11.52 -35.23 -0.41 -5.71 16 21 C 0.07 0.96 6.92 37.73 0.26 1.22 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 24 H 0.06 0.77 7.72 -51.93 -0.40 0.37 16 25 H 0.06 0.66 5.70 -51.93 -0.30 0.36 16 26 H 0.06 0.47 7.39 -51.93 -0.38 0.08 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.15 7.98 -51.93 -0.41 0.74 16 30 H 0.03 0.41 6.64 -51.93 -0.34 0.06 16 31 H 0.34 6.09 8.19 -39.29 -0.32 5.77 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.00 0.11 8.01 -51.93 -0.42 -0.30 16 35 H 0.02 0.48 8.01 -51.93 -0.42 0.07 16 36 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 37 H 0.09 0.83 7.77 -51.93 -0.40 0.43 16 38 H 0.09 0.76 5.77 -51.93 -0.30 0.46 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.99 7.97 -51.92 -0.41 0.58 16 42 H 0.12 1.81 7.18 -51.93 -0.37 1.44 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -31.25 331.12 -7.64 -38.89 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.36 Total: 2.43 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 0.42 Total: -15.71 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.12 Total: -40.41 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.74 Total: -10.75 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.25 -7.64 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722359595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.403 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds