Wall clock time and date at job start Mon Mar 30 2020 04:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47332 * 2 1 4 4 O 1.42908 * 109.47095 * 120.00285 * 2 1 3 5 5 C 1.42896 * 113.99885 * 137.66193 * 4 2 1 6 6 C 1.53001 * 110.75405 * 59.54282 * 5 4 2 7 7 N 1.46900 * 109.47096 * 65.52374 * 6 5 4 8 8 C 1.46893 * 111.00201 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47395 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47240 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00104 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00084 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00134 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00060 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47202 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47120 * 120.00362 * 14 12 10 17 17 H 1.48503 * 109.46512 * 239.99966 * 14 12 10 18 18 C 1.55302 * 110.84874 * 296.06783 * 5 4 2 19 19 C 1.55208 * 100.83063 * 275.59869 * 18 5 4 20 20 O 1.43642 * 105.25675 * 323.81935 * 19 18 5 21 21 C 1.43238 * 109.97491 * 24.28227 * 20 19 18 22 22 H 1.09000 * 109.47445 * 299.99734 * 1 2 3 23 23 H 1.08994 * 109.47175 * 59.99809 * 1 2 3 24 24 H 1.09001 * 109.47073 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47066 * 239.99881 * 2 1 3 26 26 H 1.08995 * 109.47476 * 295.53066 * 3 2 1 27 27 H 1.09006 * 109.46959 * 55.53048 * 3 2 1 28 28 H 1.09004 * 109.47502 * 175.52417 * 3 2 1 29 29 H 1.08999 * 109.47145 * 305.52745 * 6 5 4 30 30 H 1.09005 * 109.47057 * 185.52493 * 6 5 4 31 31 H 1.00907 * 110.99519 * 56.04720 * 7 6 5 32 32 H 1.09001 * 109.47416 * 300.00629 * 8 7 6 33 33 H 1.09000 * 109.47188 * 60.00309 * 8 7 6 34 34 H 1.09001 * 109.47628 * 300.00209 * 9 8 7 35 35 H 1.08998 * 109.47175 * 60.00296 * 9 8 7 36 36 H 0.97003 * 120.00381 * 179.97438 * 13 12 10 37 37 H 1.09007 * 111.12518 * 33.66719 * 18 5 4 38 38 H 1.09002 * 111.12738 * 157.81981 * 18 5 4 39 39 H 1.08991 * 110.37345 * 204.79778 * 19 18 5 40 40 H 1.09003 * 110.20958 * 82.74917 * 19 18 5 41 41 H 1.09005 * 109.83005 * 238.77828 * 21 20 19 42 42 H 1.08994 * 109.90625 * 117.84872 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1098 -1.5483 0.9231 6 6 4.2963 -0.7755 0.3436 7 7 4.7995 0.1732 1.3459 8 6 5.9421 0.9343 0.8235 9 6 6.4377 1.9091 1.8935 10 6 7.6095 2.6904 1.3573 11 1 7.9650 2.5100 0.3536 12 6 8.2272 3.6362 2.1478 13 7 7.7941 3.8563 3.3699 14 14 9.6794 4.6051 1.4829 15 1 9.9687 4.1717 0.0924 16 1 9.3539 6.0540 1.4928 17 1 10.8702 4.3594 2.3354 18 6 2.6954 -2.7121 -0.0179 19 6 2.0849 -3.7093 1.0028 20 8 2.8907 -3.5809 2.1849 21 6 3.5162 -2.2926 2.2132 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.7436 1.9327 -0.9273 27 1 1.6127 1.9789 0.8473 28 1 3.1271 1.4435 0.0802 29 1 3.9761 -0.2303 -0.5442 30 1 5.0886 -1.4743 0.0747 31 1 5.0426 -0.3011 2.2027 32 1 6.7456 0.2472 0.5583 33 1 5.6337 1.4914 -0.0611 34 1 5.6343 2.5963 2.1592 35 1 6.7462 1.3517 2.7779 36 1 8.2289 4.5215 3.9262 37 1 1.9518 -2.3841 -0.7445 38 1 3.5641 -3.1435 -0.5153 39 1 2.1384 -4.7273 0.6172 40 1 1.0508 -3.4410 1.2190 41 1 4.5995 -2.4081 2.2478 42 1 3.1760 -1.7340 3.0852 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722359596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:13 Heat of formation + Delta-G solvation = -102.372728 kcal Electronic energy + Delta-G solvation = -20300.709789 eV Core-core repulsion = 17280.481557 eV Total energy + Delta-G solvation = -3020.228232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33521 -37.51634 -35.81526 -33.31364 -32.57931 -31.15756 -30.02331 -28.23814 -27.11710 -25.31193 -23.67534 -22.54703 -21.30795 -20.59441 -19.82238 -17.65043 -16.40234 -16.32160 -15.56251 -15.33174 -14.91066 -14.67221 -14.44814 -14.01285 -13.88932 -13.28555 -13.14279 -12.74683 -12.49959 -12.31011 -12.23810 -12.07856 -12.00535 -11.67036 -11.61759 -11.12377 -11.03888 -10.94373 -10.65566 -10.54001 -10.35706 -10.03166 -9.63197 -9.61738 -9.27220 -9.11953 -8.36278 -7.85765 -6.00293 -4.03123 3.30489 3.37928 3.41507 3.52794 3.76883 4.21924 4.42488 4.52909 4.72993 4.91006 4.97108 5.03313 5.11989 5.21059 5.26724 5.35772 5.41223 5.49471 5.52574 5.61850 5.66361 5.70189 5.81709 5.84064 5.94035 5.99038 5.99927 6.25600 6.27609 6.35020 6.65640 6.85451 6.94968 7.34030 7.42372 7.70631 7.79927 7.91703 8.06881 8.42082 9.04365 9.60836 11.11063 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.004437 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.989125 B = 6308.711071 C = 6859.773874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.083 3.917 3 C -0.175 4.175 4 O -0.347 6.347 5 C 0.091 3.909 6 C 0.041 3.959 7 N -0.680 5.680 8 C 0.066 3.934 9 C 0.026 3.974 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.892 5.892 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.184 4.184 19 C 0.059 3.941 20 O -0.383 6.383 21 C 0.065 3.935 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.337 0.663 32 H 0.015 0.985 33 H 0.057 0.943 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -12.593 -7.956 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 C -0.232 4.232 4 O -0.267 6.267 5 C 0.051 3.949 6 C -0.089 4.089 7 N -0.311 5.311 8 C -0.062 4.062 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.531 5.531 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.223 4.223 19 C -0.018 4.018 20 O -0.302 6.302 21 C -0.011 4.011 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.155 0.845 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.676 -12.114 -7.623 19.796 hybrid contribution 1.605 0.146 -0.770 1.786 sum -12.071 -11.968 -8.393 18.957 Atomic orbital electron populations 1.21964 0.94627 1.01955 1.02470 1.22033 0.93822 0.93460 0.88157 1.22357 1.04321 0.95234 1.01331 1.88027 1.47562 1.58747 1.32322 1.22988 0.87840 0.89290 0.94815 1.22483 0.95096 0.94642 0.96714 1.60554 1.37518 1.27352 1.05683 1.22180 0.88493 0.95592 0.99944 1.19059 0.95814 0.93383 0.92905 1.21200 1.14665 1.20313 0.99892 0.92781 1.24997 0.97356 0.97066 0.94884 1.69983 1.41160 1.33985 1.07988 0.86547 0.82567 0.79931 0.79004 1.19809 1.20968 1.21022 1.23936 1.02369 0.96972 0.98977 1.23307 0.94924 0.99128 0.84419 1.88394 1.64778 1.34011 1.43028 1.23122 0.97540 0.82916 0.97553 0.91742 0.91631 0.92681 0.92505 0.92867 0.92018 0.89664 0.90462 0.94817 0.84530 0.96712 0.92437 0.95548 0.96790 0.93026 0.89372 0.89491 0.89926 0.91971 0.90089 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.56 37.16 0.36 -1.16 16 2 C 0.08 0.99 2.29 -26.74 -0.06 0.93 16 3 C -0.18 -2.36 9.25 37.15 0.34 -2.01 16 4 O -0.35 -4.86 9.68 -35.23 -0.34 -5.20 16 5 C 0.09 1.16 0.59 -88.67 -0.05 1.11 16 6 C 0.04 0.57 3.87 -3.82 -0.01 0.55 16 7 N -0.68 -11.72 5.59 -113.78 -0.64 -12.35 16 8 C 0.07 1.35 5.62 -3.83 -0.02 1.33 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 10 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 14 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C -0.18 -1.86 6.01 -24.34 -0.15 -2.00 16 19 C 0.06 0.62 7.78 38.33 0.30 0.91 16 20 O -0.38 -5.19 11.36 -35.23 -0.40 -5.59 16 21 C 0.07 0.87 6.23 37.88 0.24 1.10 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.61 5.70 -51.93 -0.30 0.31 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.35 5.53 -51.93 -0.29 1.07 16 29 H 0.08 1.07 5.86 -51.93 -0.30 0.76 16 30 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 31 H 0.34 5.72 7.34 -39.29 -0.29 5.44 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.09 0.78 6.47 -51.92 -0.34 0.44 16 38 H 0.09 0.80 7.98 -51.93 -0.41 0.39 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.03 7.37 -51.93 -0.38 0.65 16 42 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -30.68 329.75 -7.65 -38.33 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.34 Total: 1.63 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 0.38 Total: -12.21 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.10 Total: -38.54 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.74 Total: -10.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.68 -7.65 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722359596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.046 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds