Wall clock time and date at job start Mon Mar 30 2020 05:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 C 1.50700 * 109.47300 * 120.00925 * 2 1 3 5 5 H 1.07999 * 119.99720 * 119.99949 * 4 2 1 6 6 C 1.37874 * 119.99650 * 299.99778 * 4 2 1 7 7 N 1.31513 * 120.00583 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99597 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47369 * 89.99838 * 8 6 4 10 10 H 1.48503 * 109.46826 * 209.99685 * 8 6 4 11 11 H 1.48504 * 109.46695 * 329.99424 * 8 6 4 12 12 N 1.46905 * 109.46645 * 240.00632 * 2 1 3 13 13 C 1.46900 * 110.99850 * 183.95078 * 12 2 1 14 14 C 1.46906 * 111.00051 * 60.00111 * 12 2 1 15 15 C 1.52993 * 109.47378 * 189.99991 * 14 12 2 16 16 C 1.52996 * 109.47473 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.86139 * 51.18599 * 16 15 14 18 18 C 1.54911 * 110.98075 * 174.99659 * 16 15 14 19 19 O 1.44191 * 103.07917 * 153.67097 * 18 16 15 20 20 C 1.43365 * 107.28635 * 338.56553 * 19 18 16 21 21 C 1.53002 * 109.63487 * 119.20833 * 20 19 18 22 22 C 1.53004 * 109.63334 * 239.60046 * 20 19 18 23 23 O 1.43757 * 108.79366 * 359.32896 * 20 19 18 24 24 H 1.08997 * 109.47011 * 59.98773 * 1 2 3 25 25 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46467 * 299.99248 * 1 2 3 27 27 H 0.96997 * 120.00167 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47030 * 296.04770 * 13 12 2 29 29 H 1.08999 * 109.46702 * 56.04909 * 13 12 2 30 30 H 1.08996 * 109.46890 * 176.04778 * 13 12 2 31 31 H 1.09004 * 109.47040 * 309.99779 * 14 12 2 32 32 H 1.09000 * 109.47033 * 69.99731 * 14 12 2 33 33 H 1.09004 * 109.46862 * 299.99897 * 15 14 12 34 34 H 1.09004 * 109.46998 * 59.99419 * 15 14 12 35 35 H 1.09006 * 110.69813 * 272.06819 * 18 16 15 36 36 H 1.09004 * 110.69498 * 35.27062 * 18 16 15 37 37 H 1.09006 * 109.46852 * 61.45206 * 21 20 19 38 38 H 1.08998 * 109.47088 * 181.45032 * 21 20 19 39 39 H 1.09000 * 109.46860 * 301.45588 * 21 20 19 40 40 H 1.09004 * 109.47083 * 58.54559 * 22 20 19 41 41 H 1.08999 * 109.47509 * 178.54286 * 22 20 19 42 42 H 1.09000 * 109.47179 * 298.54487 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1310 6 6 1.6994 -0.2397 2.4826 7 7 0.9437 0.8299 2.6035 8 14 2.3227 -1.1201 4.0077 9 1 3.6307 -0.5447 4.4117 10 1 1.3447 -0.9496 5.1121 11 1 2.4881 -2.5659 3.7117 12 7 2.0196 -0.6924 -1.1996 13 6 3.4850 -0.7944 -1.1873 14 6 1.5486 -0.0261 -2.4212 15 6 1.8624 -0.9038 -3.6343 16 6 1.3712 -0.2102 -4.9065 17 1 1.7394 0.8145 -4.9568 18 6 1.7822 -1.0097 -6.1681 19 8 0.7753 -0.6394 -7.1315 20 6 -0.3605 -0.1619 -6.3984 21 6 -0.6426 1.2932 -6.7778 22 6 -1.5819 -1.0240 -6.7239 23 8 -0.0735 -0.2475 -4.9923 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 0.7098 1.1614 3.4846 28 1 3.9191 0.2045 -1.2302 29 1 3.8069 -1.2915 -0.2722 30 1 3.8162 -1.3719 -2.0503 31 1 0.4721 0.1327 -2.3564 32 1 2.0518 0.9349 -2.5280 33 1 2.9389 -1.0626 -3.6991 34 1 1.3592 -1.8648 -3.5274 35 1 2.7721 -0.7076 -6.5102 36 1 1.7519 -2.0815 -5.9718 37 1 -0.8741 1.3531 -7.8413 38 1 -1.4904 1.6615 -6.2001 39 1 0.2357 1.9017 -6.5623 40 1 -1.3714 -2.0629 -6.4701 41 1 -2.4375 -0.6750 -6.1458 42 1 -1.8070 -0.9482 -7.7877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851810144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:14 Heat of formation + Delta-G solvation = -90.829958 kcal Electronic energy + Delta-G solvation = -20171.589556 eV Core-core repulsion = 17151.861856 eV Total energy + Delta-G solvation = -3019.727700 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.64979 -37.25711 -35.11142 -33.91833 -32.71687 -30.88413 -29.04152 -27.69850 -27.49666 -25.36696 -24.19124 -22.56363 -21.19339 -20.90038 -19.25868 -17.44774 -16.40993 -16.23789 -15.52925 -15.19165 -14.84802 -14.19286 -14.00330 -13.81189 -13.60568 -13.25661 -12.91268 -12.57240 -12.46682 -12.29124 -12.25647 -12.11571 -11.85577 -11.71551 -11.26689 -11.13578 -11.01223 -10.78070 -10.58221 -10.27806 -10.10763 -10.05607 -9.99241 -9.71734 -9.66396 -8.81805 -8.40275 -7.14635 -5.98876 -4.03423 3.31376 3.31667 3.38074 3.42148 3.88617 4.34064 4.46097 4.70813 4.75997 4.86969 4.97927 5.18696 5.30772 5.35392 5.40342 5.42996 5.43961 5.57325 5.65597 5.68846 5.86400 5.90334 5.96537 6.05043 6.05794 6.19527 6.34661 6.53494 6.55591 6.79297 6.92991 7.09601 7.11368 7.20474 7.56316 7.76872 7.85128 8.24753 8.35492 8.63563 9.03089 9.61450 11.07987 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.040378 B = 0.004114 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.276209 B = 6803.775751 C = 7157.320548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.538 5.538 13 C 0.034 3.966 14 C 0.054 3.946 15 C -0.107 4.107 16 C 0.050 3.950 17 H 0.081 0.919 18 C 0.026 3.974 19 O -0.384 6.384 20 C 0.247 3.753 21 C -0.170 4.170 22 C -0.153 4.153 23 O -0.361 6.361 24 H 0.010 0.990 25 H 0.034 0.966 26 H 0.084 0.916 27 H 0.260 0.740 28 H 0.009 0.991 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -1.192 -17.589 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.263 5.263 13 C -0.114 4.114 14 C -0.075 4.075 15 C -0.145 4.145 16 C -0.008 4.008 17 H 0.099 0.901 18 C -0.051 4.051 19 O -0.306 6.306 20 C 0.170 3.830 21 C -0.228 4.228 22 C -0.211 4.211 23 O -0.282 6.282 24 H 0.028 0.972 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.852 -1.578 -17.471 17.563 hybrid contribution 0.764 0.541 0.901 1.299 sum -0.088 -1.037 -16.570 16.603 Atomic orbital electron populations 1.21845 0.97685 0.99666 0.99872 1.19237 0.92388 0.91900 0.85879 0.98580 1.21166 1.30961 1.12258 0.89802 0.91859 1.24936 0.95215 0.95104 0.99012 1.69897 1.36949 1.23082 1.23355 0.86530 0.78420 0.80089 0.82562 1.20835 1.21265 1.19837 1.62125 1.09044 1.52797 1.02288 1.22258 0.89079 0.98651 1.01420 1.22072 1.01526 0.93866 0.90038 1.21627 1.00931 1.00297 0.91630 1.24008 0.80712 0.99685 0.96351 0.90114 1.24235 0.92663 1.00220 0.87957 1.88843 1.25931 1.84362 1.31449 1.23362 0.87967 0.93925 0.77738 1.22367 1.03018 0.94941 1.02437 1.22057 0.96393 1.00357 1.02244 1.89353 1.21620 1.94668 1.22523 0.97160 0.94695 0.89753 0.93018 0.97277 0.90488 0.93852 0.90122 0.96420 0.90467 0.90050 0.88505 0.90443 0.91051 0.90518 0.91909 0.91454 0.90622 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.76 37.16 0.33 -3.02 16 2 C 0.21 5.46 2.06 -68.86 -0.14 5.32 16 3 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 4 C -0.50 -13.90 7.88 -34.44 -0.27 -14.18 16 5 H 0.06 1.73 6.41 -52.49 -0.34 1.40 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.54 -11.74 4.62 -236.28 -1.09 -12.83 16 13 C 0.03 0.67 9.04 60.06 0.54 1.22 16 14 C 0.05 0.99 4.74 -3.82 -0.02 0.98 16 15 C -0.11 -1.56 4.91 -26.74 -0.13 -1.69 16 16 C 0.05 0.65 3.43 -25.72 -0.09 0.57 16 17 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 18 C 0.03 0.29 7.54 38.17 0.29 0.58 16 19 O -0.38 -4.89 10.87 -59.04 -0.64 -5.53 16 20 C 0.25 3.05 1.47 -26.73 -0.04 3.01 16 21 C -0.17 -1.79 9.20 37.16 0.34 -1.45 16 22 C -0.15 -1.62 9.24 37.16 0.34 -1.28 16 23 O -0.36 -5.31 10.68 -59.04 -0.63 -5.94 16 24 H 0.01 0.22 6.20 -51.93 -0.32 -0.10 16 25 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.08 1.62 6.10 -51.93 -0.32 1.30 16 30 H 0.04 0.70 6.47 -51.93 -0.34 0.37 16 31 H 0.08 1.61 5.82 -51.93 -0.30 1.31 16 32 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.08 1.01 6.55 -51.93 -0.34 0.67 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -29.88 327.72 -8.08 -37.96 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.32 Total: -1.46 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 1.06 Total: -8.41 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.47 Total: -37.94 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -1.27 Total: -11.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.88 -8.08 -37.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851810144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.867 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds