Wall clock time and date at job start Mon Mar 30 2020 05:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 C 1.50700 * 109.47300 * 120.00925 * 2 1 3 5 5 H 1.07999 * 119.99720 * 119.99949 * 4 2 1 6 6 C 1.37874 * 119.99650 * 299.99778 * 4 2 1 7 7 N 1.31513 * 120.00583 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99597 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47369 * 89.99838 * 8 6 4 10 10 H 1.48503 * 109.46826 * 209.99685 * 8 6 4 11 11 H 1.48504 * 109.46695 * 329.99424 * 8 6 4 12 12 N 1.46905 * 109.46645 * 240.00632 * 2 1 3 13 13 C 1.46900 * 110.99850 * 183.95078 * 12 2 1 14 14 C 1.46906 * 111.00051 * 60.00111 * 12 2 1 15 15 C 1.52993 * 109.47378 * 189.99991 * 14 12 2 16 16 C 1.52996 * 109.47473 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.86139 * 51.18599 * 16 15 14 18 18 C 1.54911 * 110.98075 * 174.99659 * 16 15 14 19 19 O 1.44191 * 103.07917 * 153.67097 * 18 16 15 20 20 C 1.43365 * 107.28635 * 338.56553 * 19 18 16 21 21 C 1.53002 * 109.63487 * 119.20833 * 20 19 18 22 22 C 1.53004 * 109.63334 * 239.60046 * 20 19 18 23 23 O 1.43757 * 108.79366 * 359.32896 * 20 19 18 24 24 H 1.08997 * 109.47011 * 59.98773 * 1 2 3 25 25 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46467 * 299.99248 * 1 2 3 27 27 H 0.96997 * 120.00167 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47030 * 296.04770 * 13 12 2 29 29 H 1.08999 * 109.46702 * 56.04909 * 13 12 2 30 30 H 1.08996 * 109.46890 * 176.04778 * 13 12 2 31 31 H 1.09004 * 109.47040 * 309.99779 * 14 12 2 32 32 H 1.09000 * 109.47033 * 69.99731 * 14 12 2 33 33 H 1.09004 * 109.46862 * 299.99897 * 15 14 12 34 34 H 1.09004 * 109.46998 * 59.99419 * 15 14 12 35 35 H 1.09006 * 110.69813 * 272.06819 * 18 16 15 36 36 H 1.09004 * 110.69498 * 35.27062 * 18 16 15 37 37 H 1.09006 * 109.46852 * 61.45206 * 21 20 19 38 38 H 1.08998 * 109.47088 * 181.45032 * 21 20 19 39 39 H 1.09000 * 109.46860 * 301.45588 * 21 20 19 40 40 H 1.09004 * 109.47083 * 58.54559 * 22 20 19 41 41 H 1.08999 * 109.47509 * 178.54286 * 22 20 19 42 42 H 1.09000 * 109.47179 * 298.54487 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1310 6 6 1.6994 -0.2397 2.4826 7 7 0.9437 0.8299 2.6035 8 14 2.3227 -1.1201 4.0077 9 1 3.6307 -0.5447 4.4117 10 1 1.3447 -0.9496 5.1121 11 1 2.4881 -2.5659 3.7117 12 7 2.0196 -0.6924 -1.1996 13 6 3.4850 -0.7944 -1.1873 14 6 1.5486 -0.0261 -2.4212 15 6 1.8624 -0.9038 -3.6343 16 6 1.3712 -0.2102 -4.9065 17 1 1.7394 0.8145 -4.9568 18 6 1.7822 -1.0097 -6.1681 19 8 0.7753 -0.6394 -7.1315 20 6 -0.3605 -0.1619 -6.3984 21 6 -0.6426 1.2932 -6.7778 22 6 -1.5819 -1.0240 -6.7239 23 8 -0.0735 -0.2475 -4.9923 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 0.7098 1.1614 3.4846 28 1 3.9191 0.2045 -1.2302 29 1 3.8069 -1.2915 -0.2722 30 1 3.8162 -1.3719 -2.0503 31 1 0.4721 0.1327 -2.3564 32 1 2.0518 0.9349 -2.5280 33 1 2.9389 -1.0626 -3.6991 34 1 1.3592 -1.8648 -3.5274 35 1 2.7721 -0.7076 -6.5102 36 1 1.7519 -2.0815 -5.9718 37 1 -0.8741 1.3531 -7.8413 38 1 -1.4904 1.6615 -6.2001 39 1 0.2357 1.9017 -6.5623 40 1 -1.3714 -2.0629 -6.4701 41 1 -2.4375 -0.6750 -6.1458 42 1 -1.8070 -0.9482 -7.7877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851810144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:14 Heat of formation + Delta-G solvation = -110.237583 kcal Electronic energy + Delta-G solvation = -20172.431134 eV Core-core repulsion = 17151.861856 eV Total energy + Delta-G solvation = -3020.569278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.60903 -38.95456 -36.18717 -35.28867 -34.30294 -32.21768 -30.86275 -28.94477 -28.36510 -27.15134 -25.87979 -23.95033 -22.23890 -22.10775 -21.06556 -18.44817 -18.34839 -17.37513 -17.06054 -16.40450 -16.17930 -15.70268 -15.45107 -15.17996 -14.79766 -14.59047 -14.33108 -13.86781 -13.72948 -13.58305 -13.21873 -13.11423 -13.08297 -12.93785 -12.79705 -12.70169 -12.66395 -12.48841 -12.17639 -12.03404 -11.95614 -11.86922 -11.34107 -11.07648 -10.84556 -10.62452 -10.51495 -8.93584 -8.11012 -6.23254 1.42525 1.43892 1.54670 2.39968 2.42711 2.97935 3.15296 3.21405 3.65481 3.83773 3.88317 3.99325 4.08071 4.20087 4.31045 4.50897 4.58123 4.64317 4.64871 4.67285 4.73648 4.74661 4.77425 4.81362 4.92400 4.96513 5.01314 5.10051 5.12326 5.14637 5.23063 5.29431 5.32645 5.50449 5.72650 5.78616 6.16420 6.25080 6.40526 6.74647 6.91970 7.46086 8.95351 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.040378 B = 0.004114 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.276209 B = 6803.775751 C = 7157.320548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.215 3.785 3 H -0.040 1.040 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.546 5.546 13 C 0.037 3.963 14 C 0.056 3.944 15 C -0.094 4.094 16 C 0.049 3.951 17 H 0.086 0.914 18 C 0.029 3.971 19 O -0.394 6.394 20 C 0.236 3.764 21 C -0.168 4.168 22 C -0.152 4.152 23 O -0.388 6.388 24 H 0.026 0.974 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.261 0.739 28 H 0.006 0.994 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 -2.078 -18.814 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 H -0.023 1.023 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.270 5.270 13 C -0.112 4.112 14 C -0.072 4.072 15 C -0.131 4.131 16 C -0.008 4.008 17 H 0.104 0.896 18 C -0.047 4.047 19 O -0.316 6.316 20 C 0.160 3.840 21 C -0.225 4.225 22 C -0.210 4.210 23 O -0.309 6.309 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.004 -2.470 -18.719 18.882 hybrid contribution 0.493 0.843 1.230 1.570 sum 0.489 -1.628 -17.489 17.572 Atomic orbital electron populations 1.21656 0.97607 0.99080 0.99446 1.19041 0.92474 0.90124 0.87554 1.02271 1.21451 1.31115 1.12353 0.90856 0.91943 1.25757 0.95334 0.95781 1.02048 1.70031 1.37838 1.24326 1.24047 0.85490 0.77958 0.79101 0.78685 1.20097 1.20976 1.19167 1.62078 1.10538 1.52404 1.01994 1.22280 0.87580 0.98934 1.02357 1.22077 1.00160 0.94672 0.90283 1.21490 1.02258 0.98949 0.90418 1.24011 0.80301 1.00151 0.96358 0.89644 1.24330 0.93441 1.00263 0.86705 1.88828 1.26285 1.84574 1.31878 1.23652 0.88391 0.95183 0.76749 1.22363 1.02918 0.93768 1.03501 1.22082 0.95837 0.99617 1.03435 1.89334 1.22533 1.94873 1.24195 0.95534 0.95140 0.92201 0.92959 0.97560 0.92246 0.89870 0.92068 0.96520 0.88273 0.90841 0.85914 0.89904 0.89426 0.90367 0.92285 0.92144 0.90374 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.17 8.76 71.98 0.63 -5.54 16 2 C 0.22 11.32 2.06 44.17 0.09 11.41 16 3 H -0.04 -2.36 8.14 -2.39 -0.02 -2.38 16 4 C -0.52 -29.00 7.88 25.60 0.20 -28.80 16 5 H 0.06 3.43 6.41 -2.91 -0.02 3.41 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 8 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.55 -23.66 4.62 -901.45 -4.17 -27.83 16 13 C 0.04 1.39 9.04 127.69 1.15 2.54 16 14 C 0.06 2.06 4.74 86.30 0.41 2.47 16 15 C -0.09 -2.55 4.91 30.59 0.15 -2.40 16 16 C 0.05 1.20 3.43 31.25 0.11 1.30 16 17 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 18 C 0.03 0.57 7.54 72.64 0.55 1.11 16 19 O -0.39 -9.17 10.87 -126.22 -1.37 -10.54 16 20 C 0.24 5.49 1.47 30.60 0.04 5.54 16 21 C -0.17 -3.28 9.20 71.98 0.66 -2.62 16 22 C -0.15 -3.01 9.24 71.98 0.66 -2.34 16 23 O -0.39 -11.04 10.68 -126.22 -1.35 -12.39 16 24 H 0.03 1.23 6.20 -2.39 -0.01 1.21 16 25 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.06 2.45 6.10 -2.39 -0.01 2.44 16 30 H 0.08 2.47 6.47 -2.39 -0.02 2.45 16 31 H 0.06 2.46 5.82 -2.38 -0.01 2.45 16 32 H 0.02 0.61 8.12 -2.39 -0.02 0.59 16 33 H 0.10 2.26 6.55 -2.38 -0.02 2.24 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.08 1.55 8.04 -2.38 -0.02 1.53 16 37 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -64.41 327.72 1.47 -62.94 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.97 Total: 12.02 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 5.11 Total: -16.35 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -3.93 Total: -81.66 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -2.72 Total: -22.93 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -64.41 1.47 -62.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851810144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.299 kcal (2) G-P(sol) polarization free energy of solvation -64.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds