Wall clock time and date at job start Mon Mar 30 2020 04:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 N 1.46895 * 109.47215 * 120.00395 * 2 1 3 5 5 C 1.46896 * 111.00053 * 294.83349 * 4 2 1 6 6 C 1.53005 * 109.47101 * 143.26179 * 5 4 2 7 7 H 1.08992 * 109.47323 * 60.23244 * 6 5 4 8 8 O 1.42901 * 109.46700 * 300.23477 * 6 5 4 9 9 C 1.50699 * 109.47071 * 180.23570 * 6 5 4 10 10 H 1.08002 * 120.00245 * 359.97438 * 9 6 5 11 11 C 1.37880 * 119.99745 * 179.97438 * 9 6 5 12 12 N 1.31512 * 119.99870 * 0.02562 * 11 9 6 13 13 Si 1.86802 * 119.99763 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.47132 * 90.00213 * 13 11 9 15 15 H 1.48496 * 109.46837 * 209.99901 * 13 11 9 16 16 H 1.48495 * 109.47125 * 330.00198 * 13 11 9 17 17 C 1.46902 * 110.99741 * 170.88387 * 4 2 1 18 18 C 1.53183 * 109.54287 * 309.25895 * 17 4 2 19 19 C 1.53099 * 109.16368 * 183.15514 * 18 17 4 20 20 O 1.42905 * 109.41122 * 57.60734 * 19 18 17 21 21 C 1.42898 * 114.10078 * 298.84320 * 20 19 18 22 22 C 1.53086 * 109.41654 * 61.16140 * 21 20 19 23 23 H 1.09002 * 109.47371 * 306.52949 * 1 2 3 24 24 H 1.08999 * 109.47621 * 66.53615 * 1 2 3 25 25 H 1.09006 * 109.47100 * 186.53798 * 1 2 3 26 26 H 1.09004 * 109.46683 * 240.00783 * 2 1 3 27 27 H 1.09002 * 109.47193 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47657 * 300.00806 * 3 2 1 29 29 H 1.09006 * 109.46731 * 60.00273 * 3 2 1 30 30 H 1.09002 * 109.47056 * 23.26177 * 5 4 2 31 31 H 1.08997 * 109.47415 * 263.25914 * 5 4 2 32 32 H 0.96700 * 113.99963 * 304.83334 * 8 6 5 33 33 H 0.97005 * 119.99805 * 180.02562 * 12 11 9 34 34 H 1.08999 * 109.54991 * 69.52501 * 17 4 2 35 35 H 1.09005 * 109.51899 * 303.05942 * 18 17 4 36 36 H 1.08995 * 109.52508 * 63.24743 * 18 17 4 37 37 H 1.09002 * 109.47977 * 297.62737 * 19 18 17 38 38 H 1.08997 * 109.47561 * 177.58917 * 19 18 17 39 39 H 1.09007 * 109.47776 * 301.17790 * 21 20 19 40 40 H 1.09003 * 109.48957 * 181.15166 * 21 20 19 41 41 H 1.09004 * 109.52437 * 182.48685 * 22 21 20 42 42 H 1.08998 * 109.52281 * 62.29706 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 1.6521 0.0410 2.4178 6 6 1.3100 -0.9540 3.5286 7 1 2.1772 -1.5815 3.7340 8 8 0.2163 -1.7744 3.1128 9 6 0.9274 -0.2014 4.7768 10 1 0.9285 0.8786 4.7780 11 6 0.5758 -0.8917 5.9175 12 7 0.5750 -2.2068 5.9162 13 14 0.1022 0.0412 7.4650 14 1 -1.3617 0.2907 7.4641 15 1 0.4665 -0.7633 8.6589 16 1 0.8253 1.3377 7.5023 17 6 3.4718 -0.9032 1.1295 18 6 3.8318 -1.5508 -0.2111 19 6 5.3352 -1.8384 -0.2428 20 8 5.6808 -2.6812 0.8583 21 6 5.4104 -2.1082 2.1392 22 6 3.9102 -1.8315 2.2665 23 1 -0.3634 0.6117 0.8258 24 1 -0.3634 0.4092 -0.9426 25 1 -0.3633 -1.0210 0.1170 26 1 1.8932 -0.5137 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6765 1.9565 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 0.7861 0.6713 2.2152 31 1 2.4890 0.6640 2.7332 32 1 -0.5676 -1.2772 2.8421 33 1 0.3273 -2.6924 6.7186 34 1 3.9841 0.0544 1.2225 35 1 3.2799 -2.4840 -0.3247 36 1 3.5735 -0.8726 -1.0243 37 1 5.8863 -0.9008 -0.1698 38 1 5.5900 -2.3383 -1.1772 39 1 5.9625 -1.1740 2.2432 40 1 5.7197 -2.8022 2.9207 41 1 3.7079 -1.3538 3.2252 42 1 3.3600 -2.7702 2.2029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929994502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:44 Heat of formation + Delta-G solvation = -93.893384 kcal Electronic energy + Delta-G solvation = -21185.641624 eV Core-core repulsion = 18165.781083 eV Total energy + Delta-G solvation = -3019.860540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.72808 -37.66806 -35.15100 -33.03918 -32.02812 -31.16463 -29.99775 -27.77565 -26.93190 -24.92863 -23.65145 -22.87507 -21.22694 -19.87931 -18.76919 -16.76833 -16.52329 -15.77863 -15.43370 -14.68242 -14.56833 -14.45078 -14.27348 -13.92517 -13.73738 -13.22589 -13.01933 -12.60341 -12.29502 -11.99625 -11.82090 -11.67897 -11.29928 -11.12458 -11.00966 -10.94441 -10.90996 -10.85864 -10.61854 -10.31080 -10.08300 -9.97661 -9.82155 -9.37701 -8.92267 -8.47229 -8.05519 -7.48976 -5.94746 -4.13001 3.28955 3.36283 3.38154 4.03247 4.27423 4.47126 4.91326 5.09553 5.15500 5.22592 5.32323 5.36565 5.38254 5.48108 5.56783 5.63783 5.66435 5.78121 5.83268 5.89470 5.95201 5.98558 6.10579 6.16260 6.21033 6.29008 6.31011 6.45328 6.53379 6.58995 6.79905 6.81647 6.89949 7.36962 7.64211 7.69025 7.83735 8.00370 8.28884 8.90590 9.52541 9.70218 11.08768 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.020289 B = 0.007011 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.716994 B = 3992.820553 C = 4838.554431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 C -0.185 4.185 4 N -0.513 5.513 5 C 0.027 3.973 6 C 0.233 3.767 7 H 0.066 0.934 8 O -0.551 6.551 9 C -0.575 4.575 10 H 0.050 0.950 11 C 0.082 3.918 12 N -0.856 5.856 13 Si 0.884 3.116 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.091 3.909 18 C -0.152 4.152 19 C 0.065 3.935 20 O -0.386 6.386 21 C 0.062 3.938 22 C -0.152 4.152 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.335 0.665 33 H 0.259 0.741 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.062 4.032 -12.127 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 C -0.244 4.244 4 N -0.236 5.236 5 C -0.100 4.100 6 C 0.175 3.825 7 H 0.084 0.916 8 O -0.352 6.352 9 C -0.614 4.614 10 H 0.069 0.931 11 C -0.124 4.124 12 N -0.492 5.492 13 Si 0.712 3.288 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.018 4.018 18 C -0.190 4.190 19 C -0.013 4.013 20 O -0.305 6.305 21 C -0.015 4.015 22 C -0.189 4.189 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.177 0.823 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.323 2.728 -11.877 13.728 hybrid contribution -0.417 2.283 0.877 2.481 sum 5.906 5.010 -10.999 13.452 Atomic orbital electron populations 1.21844 0.94503 1.02960 1.00619 1.21788 0.95887 0.91720 0.94438 1.22525 1.00909 0.98965 1.02019 1.62347 1.11002 1.48524 1.01771 1.23193 0.98951 0.97100 0.90757 1.19600 0.87709 0.88082 0.87083 0.91647 1.86619 1.24109 1.36966 1.87475 1.21712 1.49541 0.92977 0.97169 0.93127 1.24992 0.94520 0.94626 0.98302 1.70082 1.45368 1.05783 1.27975 0.86757 0.78895 0.79970 0.83211 1.20605 1.21149 1.20011 1.21591 0.88954 0.96496 0.94766 1.22381 0.96766 1.02300 0.97571 1.22524 0.94284 0.94396 0.90084 1.87894 1.84614 1.43679 1.14306 1.22660 0.95550 0.98211 0.85030 1.22468 0.95193 1.01686 0.99592 0.92530 0.93293 0.91306 0.90374 0.93200 0.92848 0.92220 0.92066 0.95117 0.82251 0.93107 0.94978 0.90035 0.91253 0.93834 0.89254 0.93818 0.88738 0.89198 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.04 37.15 0.34 -1.66 16 2 C 0.07 1.02 2.53 -67.72 -0.17 0.84 16 3 C -0.19 -2.44 8.64 37.16 0.32 -2.12 16 4 N -0.51 -8.90 4.10 -218.50 -0.90 -9.79 16 5 C 0.03 0.54 2.83 -3.82 -0.01 0.53 16 6 C 0.23 5.77 2.72 -27.88 -0.08 5.69 16 7 H 0.07 1.76 4.97 -51.93 -0.26 1.50 16 8 O -0.55 -14.23 12.60 -35.23 -0.44 -14.68 16 9 C -0.58 -15.67 8.79 -34.44 -0.30 -15.98 16 10 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 11 C 0.08 2.28 5.40 -17.82 -0.10 2.19 16 12 N -0.86 -25.31 12.84 55.43 0.71 -24.59 16 13 Si 0.88 21.18 29.54 -169.99 -5.02 16.15 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.09 1.44 1.47 -67.52 -0.10 1.34 16 18 C -0.15 -2.05 4.76 -26.59 -0.13 -2.18 16 19 C 0.06 0.80 6.84 37.21 0.25 1.06 16 20 O -0.39 -5.84 10.77 -35.23 -0.38 -6.21 16 21 C 0.06 0.92 6.84 37.20 0.25 1.18 16 22 C -0.15 -2.64 4.26 -26.59 -0.11 -2.75 16 23 H 0.06 0.85 6.47 -51.93 -0.34 0.51 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 1.05 5.72 -51.93 -0.30 0.75 16 27 H 0.05 0.64 6.87 -51.93 -0.36 0.29 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.86 6.67 -51.93 -0.35 0.51 16 30 H 0.06 1.21 5.21 -51.93 -0.27 0.94 16 31 H 0.03 0.62 7.60 -51.93 -0.39 0.23 16 32 H 0.34 7.82 9.02 45.56 0.41 8.23 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.03 0.51 6.81 -51.93 -0.35 0.16 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 0.82 6.34 -51.93 -0.33 0.49 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.76 5.66 -51.93 -0.29 1.47 16 42 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -30.07 315.97 -7.27 -37.34 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.17 Total: 8.87 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 0.17 Total: -11.85 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: -0.18 Total: -34.39 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.82 Total: -20.89 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.07 -7.27 -37.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929994502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.552 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds