Wall clock time and date at job start Mon Mar 30 2020 05:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00099 * 2 1 4 4 C 1.52997 * 109.47286 * 175.95617 * 3 2 1 5 5 C 1.53000 * 109.46973 * 295.95785 * 3 2 1 6 6 H 1.09004 * 109.47234 * 60.41038 * 5 3 2 7 7 C 1.52996 * 109.47104 * 300.41099 * 5 3 2 8 8 N 1.46904 * 109.47185 * 180.40817 * 5 3 2 9 9 C 1.46900 * 111.00142 * 204.99793 * 8 5 3 10 10 C 1.52999 * 109.46877 * 180.02562 * 9 8 5 11 11 H 1.09002 * 109.46953 * 60.00429 * 10 9 8 12 12 O 1.42897 * 109.47490 * 300.00154 * 10 9 8 13 13 C 1.50699 * 109.46777 * 179.97438 * 10 9 8 14 14 H 1.07998 * 120.00448 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99866 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00188 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 120.00083 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47212 * 59.99681 * 17 15 13 19 19 H 1.48500 * 109.47402 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46867 * 299.99513 * 17 15 13 21 21 C 1.53005 * 109.47107 * 55.95640 * 3 2 1 22 22 C 1.53001 * 117.49693 * 133.62312 * 21 3 2 23 23 C 1.52996 * 59.99951 * 252.51110 * 22 21 3 24 24 H 1.08997 * 109.47223 * 180.74026 * 1 2 3 25 25 H 1.09010 * 109.46867 * 300.73418 * 1 2 3 26 26 H 1.08994 * 109.46926 * 60.73185 * 1 2 3 27 27 H 1.08999 * 109.47270 * 300.00298 * 4 3 2 28 28 H 1.09002 * 109.47173 * 179.97438 * 4 3 2 29 29 H 1.09007 * 109.46947 * 60.00022 * 4 3 2 30 30 H 1.08994 * 109.47142 * 59.27336 * 7 5 3 31 31 H 1.08999 * 109.47344 * 179.27619 * 7 5 3 32 32 H 1.09006 * 109.47232 * 299.27304 * 7 5 3 33 33 H 1.00904 * 110.99675 * 81.04333 * 8 5 3 34 34 H 1.08996 * 109.47141 * 300.00276 * 9 8 5 35 35 H 1.09002 * 109.46979 * 60.00468 * 9 8 5 36 36 H 0.96699 * 113.99798 * 300.00598 * 12 10 9 37 37 H 0.96997 * 120.00021 * 179.97438 * 16 15 13 38 38 H 1.09000 * 115.55045 * 279.32791 * 21 3 2 39 39 H 1.09001 * 117.50282 * 0.02562 * 22 21 3 40 40 H 1.09003 * 117.49964 * 145.01896 * 22 21 3 41 41 H 1.09002 * 117.50023 * 252.51081 * 23 22 21 42 42 H 1.09000 * 117.50105 * 107.49326 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5322 1.1861 0.1017 5 6 1.6409 2.0281 -1.2970 6 1 0.5569 2.1196 -1.3659 7 6 2.1622 1.2285 -2.4926 8 7 2.2465 3.3665 -1.3014 9 6 1.4902 4.2838 -2.1643 10 6 2.1501 5.6640 -2.1436 11 1 3.1739 5.5827 -2.5089 12 8 2.1600 6.1674 -0.8063 13 6 1.3746 6.6048 -3.0294 14 1 0.4985 6.2536 -3.5542 15 6 1.7836 7.9140 -3.1698 16 7 2.8502 8.3419 -2.5304 17 14 0.8220 9.0804 -4.2672 18 1 -0.5727 9.1916 -3.7694 19 1 1.4625 10.4200 -4.2473 20 1 0.8113 8.5569 -5.6568 21 6 1.4800 2.0998 1.1953 22 6 2.4975 2.8708 2.0386 23 6 1.8485 1.6016 2.5942 24 1 -0.3633 -1.0275 0.0133 25 1 -0.3633 0.5253 0.8834 26 1 -0.3633 0.5024 -0.8964 27 1 3.7953 0.6712 1.0257 28 1 3.9755 2.1819 0.1013 29 1 3.9100 0.6201 -0.7499 30 1 1.7228 0.2311 -2.4821 31 1 1.8879 1.7367 -3.4171 32 1 3.2475 1.1480 -2.4306 33 1 3.2153 3.3241 -1.5800 34 1 1.4831 3.9000 -3.1844 35 1 0.4663 4.3647 -1.7993 36 1 1.2805 6.2657 -0.4166 37 1 3.1382 9.2628 -2.6295 38 1 0.4941 2.5458 1.0634 39 1 3.5446 2.8125 1.7416 40 1 2.1813 3.8244 2.4615 41 1 1.1053 1.7201 3.3826 42 1 2.4687 0.7079 2.6630 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930716858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:26 Heat of formation + Delta-G solvation = -70.384027 kcal Electronic energy + Delta-G solvation = -20693.758637 eV Core-core repulsion = 17674.917539 eV Total energy + Delta-G solvation = -3018.841098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87792 -36.57458 -35.95193 -34.75097 -32.06866 -31.08288 -28.97382 -27.28189 -26.24993 -25.42348 -23.92692 -22.08718 -21.07258 -20.60014 -18.73574 -16.92804 -16.49252 -16.12494 -15.37107 -14.88455 -14.71608 -14.58340 -13.99154 -13.83170 -13.50272 -13.22436 -12.92073 -12.48556 -12.43063 -12.11537 -11.90789 -11.62633 -11.40356 -11.29700 -11.14240 -10.94501 -10.89572 -10.79466 -10.71523 -10.19490 -10.10862 -10.02203 -9.86033 -9.36540 -8.95254 -8.56462 -8.03959 -7.67010 -5.99338 -4.17681 3.28682 3.34259 3.35700 3.73176 4.26672 4.38003 4.63220 4.79673 5.05134 5.17057 5.25685 5.28505 5.32999 5.40216 5.42015 5.47566 5.56521 5.71388 5.73807 5.82580 5.92606 5.96899 6.03434 6.05606 6.20850 6.23459 6.26133 6.31204 6.36160 6.44362 6.55222 6.56877 6.86920 7.31234 7.65068 7.71721 7.86350 7.98591 8.22642 8.86083 9.47783 9.64282 11.04679 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.030140 B = 0.005077 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.785900 B = 5513.744510 C = 5882.279909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.379 6.379 3 C 0.158 3.842 4 C -0.142 4.142 5 C 0.064 3.936 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.662 5.662 9 C 0.037 3.963 10 C 0.237 3.763 11 H 0.050 0.950 12 O -0.553 6.553 13 C -0.574 4.574 14 H 0.053 0.947 15 C 0.080 3.920 16 N -0.858 5.858 17 Si 0.888 3.112 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.188 4.188 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.336 0.664 34 H 0.020 0.980 35 H 0.057 0.943 36 H 0.342 0.658 37 H 0.260 0.740 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -14.797 5.854 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.118 3.882 4 C -0.199 4.199 5 C -0.047 4.047 6 H 0.090 0.910 7 C -0.239 4.239 8 N -0.294 5.294 9 C -0.092 4.092 10 C 0.178 3.822 11 H 0.068 0.932 12 O -0.354 6.354 13 C -0.613 4.613 14 H 0.071 0.929 15 C -0.126 4.126 16 N -0.494 5.494 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.172 4.172 22 C -0.186 4.186 23 C -0.225 4.225 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.185 0.815 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.757 -14.615 6.366 16.038 hybrid contribution -1.290 0.615 -1.639 2.175 sum -3.047 -14.000 4.727 15.087 Atomic orbital electron populations 1.22660 0.81995 1.01845 1.00227 1.87914 1.19211 1.27744 1.94865 1.20867 0.93496 0.81446 0.92354 1.21935 0.92981 1.03001 1.01963 1.21994 0.99298 0.90060 0.93372 0.91013 1.22480 1.01663 1.00906 0.98821 1.60501 1.05797 1.06135 1.56925 1.22899 0.97765 0.95769 0.92799 1.19258 0.95787 0.85640 0.81467 0.93197 1.86551 1.30903 1.87928 1.30043 1.21611 1.13401 0.96160 1.30109 0.92909 1.25014 0.94571 0.98196 0.94797 1.70068 1.23075 1.16291 1.39970 0.86755 0.80335 0.80178 0.81177 1.20192 1.21186 1.20254 1.22458 1.00390 1.03269 0.91057 1.22890 0.98609 0.94996 1.02122 1.22936 1.04238 0.98922 0.96369 0.90402 0.93747 0.94211 0.92379 0.89607 0.92222 0.92173 0.92797 0.92257 0.84556 0.96162 0.92463 0.81517 0.92970 0.88496 0.88293 0.88980 0.89646 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.34 101.05 1.04 1.37 16 2 O -0.38 -5.04 9.62 -35.23 -0.34 -5.38 16 3 C 0.16 2.10 0.46 -90.62 -0.04 2.06 16 4 C -0.14 -1.79 6.88 37.16 0.26 -1.53 16 5 C 0.06 0.92 1.59 -67.71 -0.11 0.81 16 6 H 0.07 1.09 6.32 -51.93 -0.33 0.76 16 7 C -0.18 -2.42 8.66 37.16 0.32 -2.10 16 8 N -0.66 -11.16 5.22 -106.72 -0.56 -11.72 16 9 C 0.04 0.73 5.09 -3.82 -0.02 0.71 16 10 C 0.24 5.87 3.03 -27.88 -0.08 5.79 16 11 H 0.05 1.37 8.14 -51.93 -0.42 0.94 16 12 O -0.55 -14.09 12.60 -35.23 -0.44 -14.54 16 13 C -0.57 -15.65 8.76 -34.44 -0.30 -15.95 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 15 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 16 N -0.86 -25.32 12.84 55.43 0.71 -24.61 16 17 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 C -0.15 -2.06 3.42 -90.62 -0.31 -2.37 16 22 C -0.15 -2.00 9.65 -26.73 -0.26 -2.25 16 23 C -0.19 -2.25 9.85 -26.73 -0.26 -2.51 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.48 6.85 -51.92 -0.36 0.12 16 26 H 0.04 0.44 6.56 -51.93 -0.34 0.10 16 27 H 0.06 0.69 6.96 -51.93 -0.36 0.33 16 28 H 0.09 1.13 5.80 -51.93 -0.30 0.82 16 29 H 0.06 0.72 6.45 -51.93 -0.34 0.39 16 30 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 31 H 0.05 0.76 7.47 -51.93 -0.39 0.37 16 32 H 0.06 0.76 6.46 -51.93 -0.34 0.43 16 33 H 0.34 5.72 7.71 -39.29 -0.30 5.42 16 34 H 0.02 0.41 7.45 -51.93 -0.39 0.02 16 35 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 36 H 0.34 7.97 9.04 45.56 0.41 8.39 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 1.39 7.90 -51.93 -0.41 0.98 16 39 H 0.10 1.32 5.89 -51.93 -0.31 1.01 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.06 7.29 -51.93 -0.38 0.68 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -29.31 326.72 -6.75 -36.06 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -6.17 Total: 12.97 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 0.14 Total: -13.83 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.15 Total: -36.33 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.78 Total: -19.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.31 -6.75 -36.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930716858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.320 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds