Wall clock time and date at job start Mon Mar 30 2020 05:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00099 * 2 1 4 4 C 1.52997 * 109.47286 * 175.95617 * 3 2 1 5 5 C 1.53000 * 109.46973 * 295.95785 * 3 2 1 6 6 H 1.09004 * 109.47234 * 60.41038 * 5 3 2 7 7 C 1.52996 * 109.47104 * 300.41099 * 5 3 2 8 8 N 1.46904 * 109.47185 * 180.40817 * 5 3 2 9 9 C 1.46900 * 111.00142 * 204.99793 * 8 5 3 10 10 C 1.52999 * 109.46877 * 180.02562 * 9 8 5 11 11 H 1.09002 * 109.46953 * 60.00429 * 10 9 8 12 12 O 1.42897 * 109.47490 * 300.00154 * 10 9 8 13 13 C 1.50699 * 109.46777 * 179.97438 * 10 9 8 14 14 H 1.07998 * 120.00448 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99866 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00188 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 120.00083 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47212 * 59.99681 * 17 15 13 19 19 H 1.48500 * 109.47402 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46867 * 299.99513 * 17 15 13 21 21 C 1.53005 * 109.47107 * 55.95640 * 3 2 1 22 22 C 1.53001 * 117.49693 * 133.62312 * 21 3 2 23 23 C 1.52996 * 59.99951 * 252.51110 * 22 21 3 24 24 H 1.08997 * 109.47223 * 180.74026 * 1 2 3 25 25 H 1.09010 * 109.46867 * 300.73418 * 1 2 3 26 26 H 1.08994 * 109.46926 * 60.73185 * 1 2 3 27 27 H 1.08999 * 109.47270 * 300.00298 * 4 3 2 28 28 H 1.09002 * 109.47173 * 179.97438 * 4 3 2 29 29 H 1.09007 * 109.46947 * 60.00022 * 4 3 2 30 30 H 1.08994 * 109.47142 * 59.27336 * 7 5 3 31 31 H 1.08999 * 109.47344 * 179.27619 * 7 5 3 32 32 H 1.09006 * 109.47232 * 299.27304 * 7 5 3 33 33 H 1.00904 * 110.99675 * 81.04333 * 8 5 3 34 34 H 1.08996 * 109.47141 * 300.00276 * 9 8 5 35 35 H 1.09002 * 109.46979 * 60.00468 * 9 8 5 36 36 H 0.96699 * 113.99798 * 300.00598 * 12 10 9 37 37 H 0.96997 * 120.00021 * 179.97438 * 16 15 13 38 38 H 1.09000 * 115.55045 * 279.32791 * 21 3 2 39 39 H 1.09001 * 117.50282 * 0.02562 * 22 21 3 40 40 H 1.09003 * 117.49964 * 145.01896 * 22 21 3 41 41 H 1.09002 * 117.50023 * 252.51081 * 23 22 21 42 42 H 1.09000 * 117.50105 * 107.49326 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5322 1.1861 0.1017 5 6 1.6409 2.0281 -1.2970 6 1 0.5569 2.1196 -1.3659 7 6 2.1622 1.2285 -2.4926 8 7 2.2465 3.3665 -1.3014 9 6 1.4902 4.2838 -2.1643 10 6 2.1501 5.6640 -2.1436 11 1 3.1739 5.5827 -2.5089 12 8 2.1600 6.1674 -0.8063 13 6 1.3746 6.6048 -3.0294 14 1 0.4985 6.2536 -3.5542 15 6 1.7836 7.9140 -3.1698 16 7 2.8502 8.3419 -2.5304 17 14 0.8220 9.0804 -4.2672 18 1 -0.5727 9.1916 -3.7694 19 1 1.4625 10.4200 -4.2473 20 1 0.8113 8.5569 -5.6568 21 6 1.4800 2.0998 1.1953 22 6 2.4975 2.8708 2.0386 23 6 1.8485 1.6016 2.5942 24 1 -0.3633 -1.0275 0.0133 25 1 -0.3633 0.5253 0.8834 26 1 -0.3633 0.5024 -0.8964 27 1 3.7953 0.6712 1.0257 28 1 3.9755 2.1819 0.1013 29 1 3.9100 0.6201 -0.7499 30 1 1.7228 0.2311 -2.4821 31 1 1.8879 1.7367 -3.4171 32 1 3.2475 1.1480 -2.4306 33 1 3.2153 3.3241 -1.5800 34 1 1.4831 3.9000 -3.1844 35 1 0.4663 4.3647 -1.7993 36 1 1.2805 6.2657 -0.4166 37 1 3.1382 9.2628 -2.6295 38 1 0.4941 2.5458 1.0634 39 1 3.5446 2.8125 1.7416 40 1 2.1813 3.8244 2.4615 41 1 1.1053 1.7201 3.3826 42 1 2.4687 0.7079 2.6630 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930716858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:26 Heat of formation + Delta-G solvation = -91.476628 kcal Electronic energy + Delta-G solvation = -20694.673281 eV Core-core repulsion = 17674.917539 eV Total energy + Delta-G solvation = -3019.755742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95909 -38.24062 -36.96799 -36.33484 -34.19564 -32.44380 -30.23422 -28.98617 -27.18930 -26.61173 -25.65954 -23.11975 -22.48141 -22.18625 -19.84150 -18.94951 -17.56274 -17.38296 -16.65404 -16.42190 -16.26018 -15.94225 -15.82207 -15.05472 -14.90659 -14.57632 -14.20104 -14.01997 -13.59518 -13.37609 -13.12849 -12.99865 -12.81546 -12.74437 -12.59168 -12.46702 -12.45295 -12.24232 -12.00114 -11.94103 -11.23018 -11.13755 -11.00155 -10.89340 -10.69227 -10.42505 -9.97679 -9.08156 -8.11779 -6.37467 1.40889 1.41986 1.50199 2.39074 2.72010 3.14139 3.20970 3.44717 3.63336 3.93802 4.08775 4.20051 4.25474 4.35161 4.38446 4.42021 4.49405 4.55067 4.61933 4.65089 4.71574 4.81947 4.89569 4.92043 4.95917 4.96998 5.06160 5.09829 5.18983 5.23771 5.32163 5.39328 5.51408 5.62428 5.79535 6.05173 6.19468 6.37309 6.59131 6.76532 7.36699 7.65051 8.92168 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.030140 B = 0.005077 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.785900 B = 5513.744510 C = 5882.279909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.386 6.386 3 C 0.164 3.836 4 C -0.140 4.140 5 C 0.066 3.934 6 H 0.066 0.934 7 C -0.174 4.174 8 N -0.660 5.660 9 C 0.059 3.941 10 C 0.238 3.762 11 H 0.018 0.982 12 O -0.566 6.566 13 C -0.589 4.589 14 H 0.056 0.944 15 C 0.028 3.972 16 N -0.898 5.898 17 Si 0.957 3.043 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.269 1.269 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.167 4.167 24 H 0.099 0.901 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.336 0.664 34 H 0.019 0.981 35 H 0.057 0.943 36 H 0.350 0.650 37 H 0.261 0.739 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.270 -15.911 5.821 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.304 6.304 3 C 0.124 3.876 4 C -0.197 4.197 5 C -0.045 4.045 6 H 0.084 0.916 7 C -0.233 4.233 8 N -0.292 5.292 9 C -0.071 4.071 10 C 0.179 3.821 11 H 0.036 0.964 12 O -0.368 6.368 13 C -0.627 4.627 14 H 0.074 0.926 15 C -0.175 4.175 16 N -0.535 5.535 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.181 4.181 22 C -0.197 4.197 23 C -0.204 4.204 24 H 0.117 0.883 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.706 -15.753 6.333 17.193 hybrid contribution -1.008 0.910 -1.592 2.092 sum -3.714 -14.843 4.742 16.019 Atomic orbital electron populations 1.22817 0.80885 1.03270 1.00208 1.87906 1.20430 1.27272 1.94833 1.20739 0.93928 0.81507 0.91386 1.21911 0.92405 1.02701 1.02685 1.22019 0.98803 0.88847 0.94789 0.91563 1.22410 1.02067 1.01039 0.97738 1.60408 1.05528 1.07316 1.55900 1.22447 0.97380 0.93874 0.93370 1.19115 0.94165 0.87982 0.80794 0.96447 1.86500 1.31711 1.88355 1.30268 1.22022 1.13525 0.96906 1.30274 0.92574 1.25854 0.95443 1.00032 0.96144 1.70206 1.24832 1.16675 1.41776 0.85660 0.79006 0.77781 0.79387 1.19328 1.21016 1.19449 1.22438 0.99814 1.03779 0.92068 1.22868 0.98572 0.95353 1.02904 1.22961 1.03736 0.98143 0.95518 0.88309 0.93596 0.94421 0.91515 0.90456 0.91691 0.91168 0.93644 0.91665 0.84600 0.96251 0.92428 0.80579 0.93037 0.89592 0.88418 0.89978 0.88472 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.34 113.37 1.17 1.66 16 2 O -0.39 -9.42 9.62 -148.98 -1.43 -10.85 16 3 C 0.16 4.13 0.46 -10.79 0.00 4.12 16 4 C -0.14 -3.32 6.88 71.98 0.50 -2.83 16 5 C 0.07 1.84 1.59 44.91 0.07 1.91 16 6 H 0.07 1.93 6.32 -2.38 -0.02 1.92 16 7 C -0.17 -4.43 8.66 71.98 0.62 -3.81 16 8 N -0.66 -22.07 5.22 -491.57 -2.57 -24.63 16 9 C 0.06 2.35 5.09 86.30 0.44 2.78 16 10 C 0.24 11.97 3.03 29.85 0.09 12.06 16 11 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 12 O -0.57 -29.27 12.60 -148.98 -1.88 -31.15 16 13 C -0.59 -32.19 8.76 25.60 0.22 -31.96 16 14 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 15 C 0.03 1.55 5.40 84.65 0.46 2.01 16 16 N -0.90 -53.65 12.84 21.45 0.28 -53.38 16 17 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 C -0.16 -4.19 3.42 -10.79 -0.04 -4.22 16 22 C -0.16 -4.16 9.65 30.59 0.30 -3.87 16 23 C -0.17 -3.68 9.85 30.59 0.30 -3.38 16 24 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 0.91 6.85 -2.38 -0.02 0.89 16 26 H 0.04 0.77 6.56 -2.39 -0.02 0.75 16 27 H 0.07 1.46 6.96 -2.39 -0.02 1.44 16 28 H 0.08 1.97 5.80 -2.39 -0.01 1.95 16 29 H 0.06 1.46 6.45 -2.38 -0.02 1.44 16 30 H 0.07 1.65 7.65 -2.39 -0.02 1.64 16 31 H 0.04 1.23 7.47 -2.39 -0.02 1.21 16 32 H 0.06 1.58 6.46 -2.38 -0.02 1.57 16 33 H 0.34 11.41 7.71 -89.69 -0.69 10.71 16 34 H 0.02 0.77 7.45 -2.39 -0.02 0.75 16 35 H 0.06 2.29 8.06 -2.39 -0.02 2.27 16 36 H 0.35 16.51 9.04 -74.06 -0.67 15.84 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.09 2.41 7.90 -2.39 -0.02 2.39 16 39 H 0.10 2.55 5.89 -2.39 -0.01 2.54 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 42 H 0.10 2.04 7.29 -2.39 -0.02 2.03 16 Total: -1.00 -61.52 326.72 0.21 -61.30 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.34 Total: 38.96 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 4.13 Total: -25.52 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.29 Total: -78.01 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -3.31 Total: -42.00 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -61.52 0.21 -61.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930716858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.172 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds