Wall clock time and date at job start Mon Mar 30 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48495 * 109.46968 * 29.99384 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99853 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99793 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 H 1.09006 * 108.85255 * 307.87542 * 16 15 14 18 18 C 1.52939 * 108.88818 * 189.43563 * 16 15 14 19 19 C 1.55148 * 108.96355 * 209.10161 * 18 16 15 20 20 S 1.83990 * 100.90760 * 41.43941 * 19 18 16 21 21 C 1.53707 * 108.89347 * 66.45354 * 16 15 14 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 24 24 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 25 25 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 26 26 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 27 27 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 28 28 H 1.00898 * 110.99877 * 56.04636 * 14 13 11 29 29 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 30 30 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 31 31 H 1.08999 * 109.60266 * 329.04052 * 18 16 15 32 32 H 1.09010 * 109.60203 * 89.17051 * 18 16 15 33 33 H 1.08995 * 111.13565 * 283.52490 * 19 18 16 34 34 H 1.09007 * 111.17137 * 159.36235 * 19 18 16 35 35 H 1.08996 * 110.34263 * 242.49825 * 21 16 15 36 36 H 1.08999 * 110.33578 * 4.74625 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 2.9232 -8.4426 0.0044 16 6 2.1232 -9.7467 0.0036 17 1 1.3982 -9.7157 0.8170 18 6 3.0808 -10.9151 0.2420 19 6 2.5138 -12.1814 -0.4523 20 16 1.9130 -11.4691 -2.0388 21 6 1.3693 -9.8672 -1.3305 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 3.1568 -3.4354 0.0021 26 1 3.3612 -5.9713 -0.8858 27 1 3.3585 -5.9707 0.8942 28 1 1.3632 -7.3515 -0.7789 29 1 3.5519 -8.4019 -0.8851 30 1 3.5505 -8.4012 0.8949 31 1 4.0594 -10.6767 -0.1745 32 1 3.1765 -11.0969 1.3126 33 1 1.6925 -12.6101 0.1219 34 1 3.2968 -12.9198 -0.6248 35 1 0.2930 -9.8749 -1.1581 36 1 1.6416 -9.0472 -1.9949 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228564272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:12 Heat of formation + Delta-G solvation = -51.071297 kcal Electronic energy + Delta-G solvation = -16556.491882 eV Core-core repulsion = 13779.982113 eV Total energy + Delta-G solvation = -2776.509770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 258.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.01208 -37.79154 -34.65043 -34.05376 -32.33348 -30.35844 -28.18907 -26.92412 -25.33744 -22.99558 -22.14015 -20.41831 -19.65995 -17.44504 -16.99249 -16.50742 -15.68781 -15.33935 -15.27420 -14.70841 -14.42328 -14.28814 -13.83695 -13.65801 -13.02250 -12.76596 -12.56836 -12.26585 -12.14467 -11.95984 -11.67021 -11.50740 -11.38568 -10.99346 -10.96630 -10.88651 -10.33090 -10.14934 -9.41164 -9.08043 -8.74845 -8.47114 -7.97841 -7.88679 -6.17805 -4.24932 1.58118 2.05118 3.23117 3.29212 3.31607 3.35868 3.68615 4.16980 4.23549 4.37339 4.53056 4.59482 4.72437 4.90137 5.10742 5.15613 5.18197 5.22291 5.31518 5.36169 5.44319 5.46743 5.48924 5.59798 5.73906 5.89888 6.80772 7.27138 7.31674 7.42929 7.50865 7.65782 7.95951 8.61570 8.77153 9.09575 9.41841 10.92414 Molecular weight = 258.11amu Principal moments of inertia in cm(-1) A = 0.063978 B = 0.002885 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.544307 B = 9702.950654 C = 9855.440942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.714 5.714 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.040 3.960 14 N -0.673 5.673 15 C 0.067 3.933 16 C -0.096 4.096 17 H 0.093 0.907 18 C -0.119 4.119 19 C -0.067 4.067 20 S -0.307 6.307 21 C -0.062 4.062 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.390 0.610 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.350 0.650 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.720 -21.041 -0.013 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.363 5.363 11 C 0.280 3.720 12 O -0.422 6.422 13 C -0.093 4.093 14 N -0.306 5.306 15 C -0.063 4.063 16 C -0.116 4.116 17 H 0.112 0.888 18 C -0.159 4.159 19 C -0.215 4.215 20 S -0.082 6.082 21 C -0.210 4.210 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.222 0.778 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.170 0.830 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.546 -21.479 -0.470 22.771 hybrid contribution 1.209 1.567 0.195 1.988 sum 8.755 -19.912 -0.275 21.754 Atomic orbital electron populations 1.69973 1.06117 1.27326 1.48852 1.24959 0.94918 0.99471 0.94697 0.86412 0.79618 0.82644 0.78219 1.20462 1.20979 1.19748 1.21227 0.93252 0.90474 1.53261 0.91911 1.19094 0.88294 0.81919 0.97724 1.46447 1.11101 1.06113 1.72652 1.20344 0.89530 0.84259 0.77910 1.90665 1.16671 1.84705 1.50150 1.21845 0.95713 0.89384 1.02348 1.60155 1.18951 1.00062 1.51466 1.22084 0.94018 0.89140 1.01089 1.21683 0.97809 0.94880 0.97227 0.88827 1.22406 0.99803 0.91901 1.01759 1.24322 1.03179 0.99852 0.94144 1.87916 1.82224 1.20094 1.17932 1.24092 1.03402 0.95569 0.97977 0.92422 0.95604 0.95511 0.77774 0.92770 0.88505 0.82999 0.94712 0.90409 0.90243 0.89769 0.89094 0.87673 0.88641 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16 10 N -0.71 -14.79 5.55 -61.47 -0.34 -15.13 16 11 C 0.50 9.68 7.87 -10.98 -0.09 9.60 16 12 O -0.54 -12.98 16.20 5.56 0.09 -12.89 16 13 C 0.04 0.54 6.17 -4.97 -0.03 0.51 16 14 N -0.67 -8.65 6.13 -115.05 -0.70 -9.36 16 15 C 0.07 0.62 4.68 -3.82 -0.02 0.60 16 16 C -0.10 -0.80 2.86 -90.29 -0.26 -1.06 16 17 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.12 -0.78 5.78 -25.63 -0.15 -0.93 16 19 C -0.07 -0.46 7.52 38.29 0.29 -0.17 16 20 S -0.31 -3.10 23.23 -107.50 -2.50 -5.60 16 21 C -0.06 -0.58 6.36 37.52 0.24 -0.35 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.35 4.73 7.12 -39.29 -0.28 4.45 16 29 H 0.03 0.31 8.10 -51.93 -0.42 -0.11 16 30 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.08 0.51 7.83 -51.93 -0.41 0.10 16 32 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.94 6.97 -51.93 -0.36 0.58 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -32.29 312.30 -9.06 -41.35 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.57 Total: 5.12 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.46 Total: 1.43 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.31 Total: -49.87 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.50 Total: -5.60 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.29 -9.06 -41.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228564272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.721 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds