Wall clock time and date at job start Mon Mar 30 2020 05:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00296 * 2 1 4 4 H 1.48497 * 109.47191 * 270.00165 * 3 2 1 5 5 H 1.48502 * 109.46697 * 30.00375 * 3 2 1 6 6 H 1.48501 * 109.46721 * 150.00234 * 3 2 1 7 7 C 1.37879 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99769 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46976 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00072 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99930 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00084 * 179.97438 * 11 10 9 14 14 N 1.46897 * 109.47208 * 179.97438 * 13 11 10 15 15 C 1.46901 * 110.99924 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.46905 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.60820 * 54.29648 * 16 15 14 18 18 C 1.53856 * 109.46188 * 174.54686 * 16 15 14 19 19 C 1.55139 * 106.89662 * 167.08775 * 18 16 15 20 20 S 1.83456 * 102.20574 * 317.88332 * 19 18 16 21 21 C 1.54271 * 109.60739 * 293.95805 * 16 15 14 22 22 H 0.97004 * 119.99639 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46892 * 60.00762 * 9 7 2 24 24 H 1.09000 * 109.47441 * 300.00535 * 9 7 2 25 25 H 0.97005 * 119.99844 * 0.02562 * 10 9 7 26 26 H 1.09004 * 109.47116 * 59.99902 * 13 11 10 27 27 H 1.09000 * 109.47338 * 300.00287 * 13 11 10 28 28 H 1.00899 * 111.00332 * 56.04708 * 14 13 11 29 29 H 1.08997 * 109.47502 * 60.00186 * 15 14 13 30 30 H 1.08997 * 109.47080 * 299.99572 * 15 14 13 31 31 H 1.08999 * 109.97501 * 286.44212 * 18 16 15 32 32 H 1.08991 * 109.97918 * 47.73262 * 18 16 15 33 33 H 1.08999 * 110.86225 * 199.70275 * 19 18 16 34 34 H 1.09005 * 110.85872 * 76.05779 * 19 18 16 35 35 H 1.09003 * 110.40640 * 331.09595 * 21 16 15 36 36 H 1.09001 * 110.40521 * 93.51168 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7535 -4.8834 -0.0011 12 8 0.5612 -5.1049 -0.0020 13 6 2.7328 -6.0289 -0.0016 14 7 1.9983 -7.3010 -0.0015 15 6 2.9227 -8.4427 -0.0015 16 6 2.1225 -9.7468 -0.0020 17 1 1.4207 -9.7450 -0.8360 18 6 3.0853 -10.9389 -0.1398 19 6 2.2718 -12.2167 0.1953 20 16 1.2897 -11.6810 1.6493 21 6 1.3484 -9.8797 1.3258 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6245 -2.5570 0.8896 25 1 3.1566 -3.4355 -0.0002 26 1 3.3596 -5.9716 0.8883 27 1 3.3594 -5.9708 -0.8916 28 1 1.3615 -7.3510 -0.7826 29 1 3.5507 -8.4017 0.8885 30 1 3.5506 -8.4018 -0.8915 31 1 3.4640 -10.9957 -1.1603 32 1 3.9140 -10.8311 0.5599 33 1 2.9347 -13.0413 0.4573 34 1 1.6195 -12.4901 -0.6341 35 1 1.8789 -9.3667 2.1280 36 1 0.3400 -9.4797 1.2195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228564277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:14 Heat of formation + Delta-G solvation = -52.864937 kcal Electronic energy + Delta-G solvation = -16529.295554 eV Core-core repulsion = 13752.708006 eV Total energy + Delta-G solvation = -2776.587548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 258.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.98998 -37.70550 -34.70545 -34.06753 -32.33762 -30.30441 -28.20858 -26.80850 -25.14593 -23.00735 -22.16361 -20.70052 -19.64964 -17.29391 -16.80681 -16.27140 -15.98736 -15.57150 -15.17532 -14.66567 -14.36145 -14.22700 -13.81509 -13.57367 -13.11464 -12.82637 -12.39591 -12.19959 -12.09070 -11.92604 -11.69695 -11.52533 -11.41515 -11.07582 -10.99377 -10.89224 -10.33501 -10.10669 -9.41632 -9.08383 -8.75273 -8.47417 -7.89222 -7.88163 -6.18246 -4.25389 1.63794 2.19975 3.22684 3.28821 3.31243 3.35385 3.66972 4.20694 4.27957 4.35864 4.42771 4.67726 4.81527 4.87736 5.06168 5.17763 5.20347 5.30321 5.33884 5.34514 5.44430 5.46960 5.48437 5.58968 5.80366 5.87942 6.78742 7.26515 7.31176 7.42360 7.50427 7.65222 7.95553 8.61043 8.76695 9.09095 9.41399 10.91963 Molecular weight = 258.11amu Principal moments of inertia in cm(-1) A = 0.065512 B = 0.002866 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.299473 B = 9765.716411 C = 9995.541981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.714 5.714 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.041 3.959 14 N -0.672 5.672 15 C 0.070 3.930 16 C -0.094 4.094 17 H 0.084 0.916 18 C -0.123 4.123 19 C -0.070 4.070 20 S -0.315 6.315 21 C -0.046 4.046 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.390 0.610 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.351 0.649 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 -20.600 -1.471 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.363 5.363 11 C 0.280 3.720 12 O -0.422 6.422 13 C -0.092 4.092 14 N -0.305 5.305 15 C -0.061 4.061 16 C -0.114 4.114 17 H 0.102 0.898 18 C -0.162 4.162 19 C -0.218 4.218 20 S -0.090 6.090 21 C -0.194 4.194 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.222 0.778 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.171 0.829 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.544 -21.238 0.103 22.539 hybrid contribution 1.717 1.748 -1.800 3.040 sum 9.261 -19.491 -1.698 21.645 Atomic orbital electron populations 1.69978 1.06116 1.27323 1.48836 1.24961 0.94921 0.99473 0.94696 0.86412 0.79626 0.82649 0.78208 1.20471 1.20968 1.19747 1.21226 0.93245 0.90478 1.53276 0.91920 1.19092 0.88291 0.81914 0.97721 1.46451 1.11092 1.06128 1.72665 1.20339 0.89532 0.84249 0.77921 1.90668 1.16663 1.84698 1.50122 1.21836 0.95692 0.89381 1.02290 1.60088 1.18816 0.99971 1.51583 1.21995 0.94017 0.89036 1.01064 1.22005 0.97095 0.94657 0.97689 0.89791 1.22589 0.98602 0.91768 1.03278 1.24188 0.99793 1.00377 0.97441 1.87687 1.73244 1.09833 1.38192 1.24002 1.04765 0.91093 0.99565 0.92421 0.95613 0.95512 0.77790 0.88553 0.92813 0.82906 0.90425 0.94767 0.89772 0.90066 0.88096 0.89226 0.88493 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.60 5.43 -5.19 -0.03 6.58 16 10 N -0.71 -14.67 5.55 -61.47 -0.34 -15.01 16 11 C 0.50 9.55 7.87 -10.98 -0.09 9.47 16 12 O -0.54 -12.85 16.20 5.56 0.09 -12.76 16 13 C 0.04 0.53 6.17 -4.98 -0.03 0.50 16 14 N -0.67 -8.31 5.89 -115.06 -0.68 -8.99 16 15 C 0.07 0.61 4.96 -3.82 -0.02 0.59 16 16 C -0.09 -0.78 2.75 -89.51 -0.25 -1.02 16 17 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.12 -0.80 5.77 -25.15 -0.15 -0.94 16 19 C -0.07 -0.50 7.38 38.29 0.28 -0.22 16 20 S -0.32 -3.36 23.26 -107.50 -2.50 -5.86 16 21 C -0.05 -0.47 6.59 37.82 0.25 -0.22 16 22 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 26 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.35 4.57 8.43 -39.29 -0.33 4.23 16 29 H 0.08 0.66 8.02 -51.93 -0.42 0.25 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 1.03 7.81 -51.93 -0.41 0.62 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -32.09 314.71 -9.09 -41.18 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.68 Total: 4.92 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.44 Total: 1.39 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.28 Total: -49.33 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.50 Total: -5.86 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.09 -9.09 -41.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228564277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.685 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds