Wall clock time and date at job start Mon Mar 30 2020 04:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48491 * 109.47369 * 240.00166 * 3 2 1 5 5 H 1.48504 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99961 * 3 2 1 7 7 C 1.40247 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.39908 * 119.99935 * 0.27850 * 7 2 1 10 10 N 1.30858 * 125.64732 * 359.41838 * 9 7 2 11 11 C 1.32494 * 117.06271 * 179.83650 * 10 9 7 12 12 C 1.35390 * 113.80411 * 0.31841 * 11 10 9 13 13 S 1.71629 * 109.88944 * 359.95607 * 12 11 10 14 14 C 1.51733 * 127.43629 * 180.15591 * 12 11 10 15 15 S 1.81566 * 108.94797 * 341.89289 * 14 12 11 16 16 O 1.42091 * 108.82324 * 159.87007 * 15 14 12 17 17 O 1.42103 * 108.82168 * 291.54231 * 15 14 12 18 18 C 1.81840 * 100.37891 * 45.72280 * 15 14 12 19 19 C 1.52039 * 119.58417 * 179.97438 * 11 10 9 20 20 H 0.97005 * 120.00041 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.55512 * 101.73317 * 14 12 11 22 22 H 1.08995 * 109.55860 * 221.94827 * 14 12 11 23 23 H 1.09004 * 109.60138 * 53.48193 * 18 15 14 24 24 H 1.09001 * 109.60119 * 173.96701 * 18 15 14 25 25 H 1.08999 * 109.07420 * 39.86860 * 19 11 10 26 26 H 1.09006 * 109.07586 * 280.90564 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.0946 1.6965 -1.2124 5 1 1.2759 2.7465 0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0082 -1.2146 0.0005 8 1 3.0882 -1.2145 0.0001 9 6 1.3087 -2.4262 -0.0048 10 7 0.0065 -2.5550 0.0003 11 6 -0.4773 -3.7885 -0.0096 12 6 0.4764 -4.7494 -0.0169 13 16 2.0332 -4.0271 -0.0119 14 6 0.2709 -6.2527 -0.0320 15 16 -1.4273 -6.6210 0.4943 16 8 -1.7730 -7.9250 0.0481 17 8 -1.5614 -6.2953 1.8710 18 6 -2.3475 -5.4005 -0.4908 19 6 -1.9822 -4.0046 -0.0038 20 1 -0.4850 0.8401 0.0004 21 1 0.4307 -6.6326 -1.0411 22 1 0.9768 -6.7244 0.6515 23 1 -2.0792 -5.5022 -1.5424 24 1 -3.4182 -5.5629 -0.3667 25 1 -2.4506 -3.2659 -0.6543 26 1 -2.3572 -3.8724 1.0111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042332431.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:48 Heat of formation + Delta-G solvation = -67.598847 kcal Electronic energy + Delta-G solvation = -15127.593394 eV Core-core repulsion = 12423.734956 eV Total energy + Delta-G solvation = -2703.858438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.012 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87460 -38.04883 -37.09688 -36.20510 -34.37260 -32.47989 -30.13653 -26.64571 -25.27068 -23.40770 -20.86189 -19.55898 -18.74927 -18.45971 -17.39654 -17.13374 -16.64534 -16.35068 -15.74683 -15.28335 -14.79964 -14.31982 -14.11989 -13.85023 -13.64166 -13.26243 -13.13953 -13.09112 -13.00221 -12.70141 -12.52411 -12.26056 -11.92386 -11.76819 -11.24461 -11.02306 -9.69223 -9.66661 -9.33875 -8.61098 -6.69829 -0.91260 0.47771 1.19762 1.43555 1.51189 1.53433 1.60011 1.86840 2.18269 2.36728 2.68166 3.02774 3.18491 3.58418 3.77433 3.90496 4.10511 4.25472 4.48221 4.62087 4.83489 4.87532 4.92401 5.11860 5.64212 5.96161 6.24215 6.53499 7.88178 8.19943 Molecular weight = 259.01amu Principal moments of inertia in cm(-1) A = 0.045921 B = 0.006341 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.594607 B = 4414.627832 C = 4815.467016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.028 3.972 3 Si 1.004 2.996 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.405 4.405 8 H 0.108 0.892 9 C 0.208 3.792 10 N -0.569 5.569 11 C 0.100 3.900 12 C -0.382 4.382 13 S -0.086 6.086 14 C -0.483 4.483 15 S 2.444 3.556 16 O -0.967 6.967 17 O -0.974 6.974 18 C -0.572 4.572 19 C -0.029 4.029 20 H 0.294 0.706 21 H 0.146 0.854 22 H 0.128 0.872 23 H 0.157 0.843 24 H 0.172 0.828 25 H 0.100 0.900 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 -3.160 -2.718 4.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.199 4.199 3 Si 0.821 3.179 4 H -0.176 1.176 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.447 4.447 8 H 0.126 0.874 9 C -0.044 4.044 10 N -0.290 5.290 11 C -0.039 4.039 12 C -0.506 4.506 13 S 0.171 5.829 14 C -0.614 4.614 15 S 2.629 3.371 16 O -0.964 6.964 17 O -0.971 6.971 18 C -0.704 4.704 19 C -0.070 4.070 20 H 0.105 0.895 21 H 0.164 0.836 22 H 0.147 0.853 23 H 0.175 0.825 24 H 0.189 0.811 25 H 0.118 0.882 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.683 -3.714 -2.083 4.578 hybrid contribution -0.052 0.895 -0.458 1.007 sum -1.735 -2.818 -2.541 4.172 Atomic orbital electron populations 1.70036 1.09309 1.31052 1.25646 1.27150 0.95874 1.04518 0.92368 0.84926 0.78491 0.73856 0.80580 1.17643 1.18833 1.17892 1.19556 0.95689 0.88717 1.40776 0.87415 1.24094 0.90152 0.94174 0.95960 1.67505 1.10443 1.19609 1.31419 1.21564 0.96785 0.88208 0.97386 1.23028 0.95836 0.95993 1.35753 1.83042 1.12174 1.06553 1.81081 1.28403 1.23649 0.96594 1.12739 1.07066 0.78568 0.75621 0.75826 1.93534 1.82456 1.36781 1.83637 1.93518 1.85526 1.85647 1.32411 1.29789 1.15582 1.09245 1.15812 1.19726 0.88346 0.95433 1.03453 0.89522 0.83559 0.85343 0.82536 0.81053 0.88193 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.51 11.89 21.88 0.26 -36.25 15 2 C 0.03 1.30 5.50 85.35 0.47 1.77 15 3 Si 1.00 33.65 29.56 68.60 2.03 35.67 15 4 H -0.25 -8.10 7.11 99.48 0.71 -7.39 15 5 H -0.26 -8.40 7.11 99.48 0.71 -7.69 15 6 H -0.25 -8.29 7.11 99.48 0.71 -7.58 15 7 C -0.40 -20.15 9.40 23.16 0.22 -19.93 15 8 H 0.11 4.88 7.85 -2.91 -0.02 4.86 15 9 C 0.21 10.98 7.06 85.24 0.60 11.58 15 10 N -0.57 -30.33 8.64 -181.39 -1.57 -31.90 15 11 C 0.10 4.56 6.60 42.23 0.28 4.84 15 12 C -0.38 -16.42 6.18 25.36 0.16 -16.26 15 13 S -0.09 -3.98 23.07 -56.49 -1.30 -5.28 15 14 C -0.48 -15.59 6.62 71.57 0.47 -15.11 15 15 S 2.44 72.69 5.38 -56.49 -0.30 72.39 15 16 O -0.97 -30.84 18.11 -127.41 -2.31 -33.15 15 17 O -0.97 -36.98 17.80 -127.41 -2.27 -39.24 15 18 C -0.57 -14.19 6.36 71.75 0.46 -13.74 15 19 C -0.03 -1.02 5.75 30.04 0.17 -0.84 15 20 H 0.29 12.87 8.29 -92.70 -0.77 12.11 15 21 H 0.15 3.87 8.14 -2.39 -0.02 3.85 15 22 H 0.13 3.94 8.14 -2.39 -0.02 3.92 15 23 H 0.16 3.19 8.14 -2.39 -0.02 3.17 15 24 H 0.17 2.95 8.14 -2.39 -0.02 2.93 15 25 H 0.10 3.41 8.14 -2.39 -0.02 3.39 15 26 H 0.09 3.10 8.09 -2.38 -0.02 3.09 15 Total: -1.00 -69.37 254.18 -1.42 -70.79 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.21 Total: 14.66 kcal Atomic # 6 Polarization: -50.52 SS G_CDS: 2.83 Total: -47.69 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -1.31 Total: -68.14 kcal Atomic # 8 Polarization: -67.81 SS G_CDS: -4.58 Total: -72.39 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.03 Total: 35.67 kcal Atomic # 16 Polarization: 68.71 SS G_CDS: -1.61 Total: 67.11 kcal Total: -69.37 -1.42 -70.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042332431.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.191 kcal (2) G-P(sol) polarization free energy of solvation -69.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds