Wall clock time and date at job start Mon Mar 30 2020 04:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99330 * 2 1 4 4 C 1.50696 * 109.47712 * 66.04737 * 3 2 1 5 5 H 1.08000 * 119.99606 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00503 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99752 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00308 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47210 * 89.99767 * 8 6 4 10 10 H 1.48500 * 109.47258 * 209.99854 * 8 6 4 11 11 H 1.48502 * 109.47375 * 330.00211 * 8 6 4 12 12 C 1.46894 * 111.00265 * 236.04775 * 2 1 3 13 13 C 1.50703 * 109.46723 * 293.94789 * 12 2 1 14 14 C 1.37992 * 120.07918 * 260.28250 * 13 12 2 15 15 C 1.38321 * 120.14671 * 180.30348 * 14 13 12 16 16 C 1.38372 * 120.28234 * 359.71871 * 15 14 13 17 17 C 1.37946 * 120.14566 * 359.97438 * 16 15 14 18 18 C 1.39526 * 120.07098 * 80.00467 * 13 12 2 19 19 C 1.43205 * 120.13876 * 359.97438 * 18 13 12 20 20 C 3.77419 * 40.14634 * 245.92929 * 2 1 3 21 21 C 4.75504 * 35.15631 * 269.03436 * 2 1 3 22 22 N 1.46905 * 109.47036 * 229.74074 * 21 20 19 23 23 H 1.09002 * 109.46726 * 183.95362 * 1 2 3 24 24 H 1.08996 * 109.47347 * 303.95770 * 1 2 3 25 25 H 1.09004 * 109.47065 * 63.95965 * 1 2 3 26 26 H 1.09004 * 109.46438 * 186.04726 * 3 2 1 27 27 H 1.08996 * 109.47325 * 306.03730 * 3 2 1 28 28 H 0.96996 * 120.00384 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47463 * 173.95592 * 12 2 1 30 30 H 1.08992 * 109.47480 * 53.94826 * 12 2 1 31 31 H 1.08005 * 119.92178 * 359.97438 * 14 13 12 32 32 H 1.07992 * 119.86036 * 179.74035 * 15 14 13 33 33 H 1.08004 * 119.92417 * 180.02562 * 16 15 14 34 34 H 1.07995 * 120.07468 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.47170 * 349.73467 * 21 20 19 36 36 H 1.08992 * 109.47449 * 109.74243 * 21 20 19 37 37 H 1.00900 * 110.99847 * 179.97438 * 22 21 20 38 38 H 1.00902 * 110.99423 * 303.95484 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0275 3.3493 1.5288 7 7 2.7134 4.0014 0.6157 8 14 1.5825 4.1871 3.1379 9 1 2.6585 3.9501 4.1336 10 1 1.4310 5.6468 2.9107 11 1 0.3041 3.6304 3.6489 12 6 1.9955 -0.7659 -1.1375 13 6 1.6371 -2.2204 -0.9727 14 6 2.5704 -3.1115 -0.4838 15 6 2.2449 -4.4480 -0.3378 16 6 0.9811 -4.8992 -0.6751 17 6 0.0369 -4.0175 -1.1590 18 6 0.3590 -2.6679 -1.3087 19 6 -0.6164 -1.7472 -1.8105 20 6 -1.4159 -0.9925 -2.2218 21 6 -2.4186 -0.0461 -2.7376 22 7 -3.6358 -0.1281 -1.9192 23 1 -0.3633 -1.0253 0.0709 24 1 -0.3634 0.5740 0.8523 25 1 -0.3633 0.4512 -0.9234 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 2.9879 4.9175 0.7775 29 1 3.0798 -0.6611 -1.1756 30 1 1.5612 -0.3873 -2.0627 31 1 3.5588 -2.7656 -0.2195 32 1 2.9802 -5.1421 0.0413 33 1 0.7330 -5.9439 -0.5584 34 1 -0.9492 -4.3708 -1.4214 35 1 -2.0187 0.9668 -2.6934 36 1 -2.6579 -0.2976 -3.7708 37 1 -4.3398 0.5130 -2.2532 38 1 -3.9900 -1.0725 -1.8916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049608299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:05 Heat of formation + Delta-G solvation = 87.346641 kcal Electronic energy + Delta-G solvation = -18611.990815 eV Core-core repulsion = 15841.872441 eV Total energy + Delta-G solvation = -2770.118374 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.52569 -36.42506 -35.48996 -33.16507 -32.51649 -31.17986 -30.02174 -27.14833 -26.54538 -25.27968 -23.83134 -22.57827 -21.33106 -19.99802 -17.86702 -16.55418 -16.22005 -15.49146 -15.25632 -15.09565 -14.79215 -14.49856 -14.26771 -13.62591 -13.51625 -13.37660 -12.89019 -12.51654 -12.31650 -11.81520 -11.60799 -11.35390 -11.07729 -11.02727 -10.83883 -10.68225 -10.56142 -10.13435 -9.77660 -9.56299 -9.17116 -8.87812 -8.65340 -8.38608 -8.19345 -7.11789 -5.97761 -3.98312 1.09154 1.54466 2.80024 3.08223 3.36196 3.41482 3.46593 4.03607 4.22693 4.48587 4.73246 5.01615 5.03851 5.12261 5.28848 5.32327 5.37548 5.41880 5.52592 5.67317 5.68380 5.94318 6.06643 6.21645 6.27470 6.39572 6.52965 6.55916 6.60173 6.84271 6.91425 6.98673 7.08921 7.29002 7.34370 7.40389 7.75554 7.85940 8.13622 8.27346 8.60964 9.09450 9.65457 11.13255 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.006082 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.376756 B = 4602.861449 C = 5824.265497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.533 5.533 3 C 0.194 3.806 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.087 3.913 13 C -0.037 4.037 14 C -0.104 4.104 15 C -0.113 4.113 16 C -0.130 4.130 17 C -0.101 4.101 18 C 0.016 3.984 19 C -0.111 4.111 20 C -0.169 4.169 21 C 0.180 3.820 22 N -0.843 5.843 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.018 0.982 26 H 0.029 0.971 27 H -0.010 1.010 28 H 0.260 0.740 29 H 0.078 0.922 30 H 0.032 0.968 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.348 0.652 38 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.022 -14.577 -7.286 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.257 5.257 3 C 0.069 3.931 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.041 4.041 13 C -0.037 4.037 14 C -0.122 4.122 15 C -0.131 4.131 16 C -0.148 4.148 17 C -0.119 4.119 18 C 0.015 3.985 19 C -0.112 4.112 20 C -0.169 4.169 21 C 0.051 3.949 22 N -0.374 5.374 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.008 0.992 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.162 0.838 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.322 -14.337 -6.298 16.887 hybrid contribution -0.882 0.695 -0.727 1.337 sum -7.204 -13.642 -7.024 16.951 Atomic orbital electron populations 1.22774 0.88306 0.99674 1.00514 1.62177 1.07556 1.17436 1.38559 1.19737 0.95245 0.81467 0.96670 1.21159 1.34494 0.96880 1.01614 0.91881 1.24975 0.95363 0.97300 0.96984 1.69961 1.38602 1.11438 1.34049 0.86499 0.78904 0.78376 0.83658 1.20644 1.21344 1.19831 1.21047 1.00339 0.89009 0.93694 1.20107 0.92000 0.96235 0.95373 1.21007 0.99783 0.92725 0.98709 1.21211 0.96597 0.95727 0.99535 1.20953 0.93719 0.99339 1.00817 1.21075 0.99411 0.91769 0.99610 1.15858 0.90739 0.90801 1.01074 1.18913 0.95920 0.97487 0.98900 1.21812 0.97458 0.96903 1.00761 1.18603 0.86884 0.96429 0.93018 1.58546 1.07937 1.12404 1.58469 0.92770 0.91476 0.96328 0.95305 0.99233 0.93006 0.90395 0.94969 0.85374 0.86004 0.86028 0.86144 0.88423 0.93411 0.83845 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 7.41 60.07 0.45 1.23 16 2 N -0.53 -12.42 4.74 -245.83 -1.17 -13.59 16 3 C 0.19 5.27 4.72 -4.98 -0.02 5.25 16 4 C -0.50 -14.68 8.46 -34.44 -0.29 -14.97 16 5 H 0.06 1.85 7.12 -52.49 -0.37 1.47 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 8 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.09 1.72 4.96 -4.98 -0.02 1.69 16 13 C -0.04 -0.62 5.18 -104.23 -0.54 -1.16 16 14 C -0.10 -1.53 9.66 -39.64 -0.38 -1.91 16 15 C -0.11 -1.39 10.04 -39.50 -0.40 -1.78 16 16 C -0.13 -1.54 10.03 -39.64 -0.40 -1.94 16 17 C -0.10 -1.36 9.75 -39.20 -0.38 -1.74 16 18 C 0.02 0.26 4.82 -107.00 -0.52 -0.26 16 19 C -0.11 -1.86 8.80 -38.84 -0.34 -2.20 16 20 C -0.17 -2.64 11.14 -37.12 -0.41 -3.06 16 21 C 0.18 2.21 7.26 -6.61 -0.05 2.16 16 22 N -0.84 -9.32 9.60 -12.90 -0.12 -9.44 16 23 H 0.05 1.13 4.70 -51.93 -0.24 0.89 16 24 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 25 H 0.02 0.41 5.89 -51.93 -0.31 0.10 16 26 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 27 H -0.01 -0.29 8.12 -51.93 -0.42 -0.72 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.08 1.47 7.80 -51.93 -0.40 1.07 16 30 H 0.03 0.65 7.46 -51.93 -0.39 0.26 16 31 H 0.13 1.75 8.04 -52.48 -0.42 1.32 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.35 2.90 9.08 -39.29 -0.36 2.54 16 38 H 0.34 3.31 8.97 -39.29 -0.35 2.96 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -32.73 316.80 -9.49 -42.22 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.28 Total: 2.57 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.41 Total: -17.20 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.55 Total: -49.60 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.73 -9.49 -42.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049608299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.566 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds