Wall clock time and date at job start Mon Mar 30 2020 04:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99330 * 2 1 4 4 C 1.50696 * 109.47712 * 66.04737 * 3 2 1 5 5 H 1.08000 * 119.99606 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00503 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99752 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00308 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47210 * 89.99767 * 8 6 4 10 10 H 1.48500 * 109.47258 * 209.99854 * 8 6 4 11 11 H 1.48502 * 109.47375 * 330.00211 * 8 6 4 12 12 C 1.46894 * 111.00265 * 236.04775 * 2 1 3 13 13 C 1.50703 * 109.46723 * 293.94789 * 12 2 1 14 14 C 1.37992 * 120.07918 * 260.28250 * 13 12 2 15 15 C 1.38321 * 120.14671 * 180.30348 * 14 13 12 16 16 C 1.38372 * 120.28234 * 359.71871 * 15 14 13 17 17 C 1.37946 * 120.14566 * 359.97438 * 16 15 14 18 18 C 1.39526 * 120.07098 * 80.00467 * 13 12 2 19 19 C 1.43205 * 120.13876 * 359.97438 * 18 13 12 20 20 C 3.77419 * 40.14634 * 245.92929 * 2 1 3 21 21 C 4.75504 * 35.15631 * 269.03436 * 2 1 3 22 22 N 1.46905 * 109.47036 * 229.74074 * 21 20 19 23 23 H 1.09002 * 109.46726 * 183.95362 * 1 2 3 24 24 H 1.08996 * 109.47347 * 303.95770 * 1 2 3 25 25 H 1.09004 * 109.47065 * 63.95965 * 1 2 3 26 26 H 1.09004 * 109.46438 * 186.04726 * 3 2 1 27 27 H 1.08996 * 109.47325 * 306.03730 * 3 2 1 28 28 H 0.96996 * 120.00384 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47463 * 173.95592 * 12 2 1 30 30 H 1.08992 * 109.47480 * 53.94826 * 12 2 1 31 31 H 1.08005 * 119.92178 * 359.97438 * 14 13 12 32 32 H 1.07992 * 119.86036 * 179.74035 * 15 14 13 33 33 H 1.08004 * 119.92417 * 180.02562 * 16 15 14 34 34 H 1.07995 * 120.07468 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.47170 * 349.73467 * 21 20 19 36 36 H 1.08992 * 109.47449 * 109.74243 * 21 20 19 37 37 H 1.00900 * 110.99847 * 179.97438 * 22 21 20 38 38 H 1.00902 * 110.99423 * 303.95484 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0275 3.3493 1.5288 7 7 2.7134 4.0014 0.6157 8 14 1.5825 4.1871 3.1379 9 1 2.6585 3.9501 4.1336 10 1 1.4310 5.6468 2.9107 11 1 0.3041 3.6304 3.6489 12 6 1.9955 -0.7659 -1.1375 13 6 1.6371 -2.2204 -0.9727 14 6 2.5704 -3.1115 -0.4838 15 6 2.2449 -4.4480 -0.3378 16 6 0.9811 -4.8992 -0.6751 17 6 0.0369 -4.0175 -1.1590 18 6 0.3590 -2.6679 -1.3087 19 6 -0.6164 -1.7472 -1.8105 20 6 -1.4159 -0.9925 -2.2218 21 6 -2.4186 -0.0461 -2.7376 22 7 -3.6358 -0.1281 -1.9192 23 1 -0.3633 -1.0253 0.0709 24 1 -0.3634 0.5740 0.8523 25 1 -0.3633 0.4512 -0.9234 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 2.9879 4.9175 0.7775 29 1 3.0798 -0.6611 -1.1756 30 1 1.5612 -0.3873 -2.0627 31 1 3.5588 -2.7656 -0.2195 32 1 2.9802 -5.1421 0.0413 33 1 0.7330 -5.9439 -0.5584 34 1 -0.9492 -4.3708 -1.4214 35 1 -2.0187 0.9668 -2.6934 36 1 -2.6579 -0.2976 -3.7708 37 1 -4.3398 0.5130 -2.2532 38 1 -3.9900 -1.0725 -1.8916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049608299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:05 Heat of formation + Delta-G solvation = 64.619544 kcal Electronic energy + Delta-G solvation = -18612.976336 eV Core-core repulsion = 15841.872441 eV Total energy + Delta-G solvation = -2771.103895 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73823 -38.05222 -36.60802 -34.87408 -34.03643 -32.58689 -31.10580 -29.20464 -28.10771 -26.38485 -25.68327 -23.64815 -22.94983 -21.61675 -18.98202 -18.54644 -17.40400 -16.94473 -16.65271 -16.47436 -16.26237 -15.76310 -15.58552 -15.33820 -14.89402 -14.61381 -14.03668 -13.98206 -13.82796 -13.55140 -13.35201 -12.87646 -12.81615 -12.65222 -12.51489 -12.20315 -12.14341 -11.94584 -11.53039 -11.24816 -10.88290 -10.63559 -9.78802 -9.76441 -9.34755 -8.99757 -8.22503 -6.33015 -0.02148 0.45426 1.39249 1.41329 1.52801 1.59485 1.94983 2.39135 2.91109 3.09462 3.11176 3.49115 3.83057 3.85843 3.92735 4.17160 4.32466 4.35184 4.40544 4.45669 4.54411 4.58040 4.70154 4.75078 4.77279 5.03433 5.07393 5.12053 5.16308 5.22731 5.49920 5.56556 5.61551 5.66809 5.99527 6.05018 6.08653 6.26080 6.53136 6.55064 6.59888 6.81502 7.36338 8.88729 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.006082 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.376756 B = 4602.861449 C = 5824.265497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.538 5.538 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.267 1.267 12 C 0.093 3.907 13 C -0.066 4.066 14 C -0.114 4.114 15 C -0.105 4.105 16 C -0.117 4.117 17 C -0.102 4.102 18 C -0.005 4.005 19 C -0.143 4.143 20 C -0.173 4.173 21 C 0.178 3.822 22 N -0.853 5.853 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.016 0.984 26 H 0.007 0.993 27 H -0.041 1.041 28 H 0.266 0.734 29 H 0.076 0.924 30 H 0.020 0.980 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.141 0.859 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.363 0.637 38 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.854 -16.573 -6.403 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.262 5.262 3 C 0.084 3.916 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.194 4.194 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.192 1.192 12 C -0.035 4.035 13 C -0.067 4.067 14 C -0.133 4.133 15 C -0.123 4.123 16 C -0.134 4.134 17 C -0.120 4.120 18 C -0.006 4.006 19 C -0.145 4.145 20 C -0.174 4.174 21 C 0.049 3.951 22 N -0.387 5.387 23 H 0.089 0.911 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.026 0.974 27 H -0.023 1.023 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.038 0.962 31 H 0.149 0.851 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.158 0.842 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.179 0.821 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.168 -16.352 -5.427 18.660 hybrid contribution -0.624 1.215 -1.072 1.736 sum -7.792 -15.137 -6.499 18.223 Atomic orbital electron populations 1.22616 0.87593 1.00169 0.99153 1.62103 1.08182 1.15203 1.40752 1.19395 0.93718 0.83433 0.95091 1.21400 1.35025 0.97691 1.02151 0.92370 1.25906 0.94869 0.97825 1.00842 1.70081 1.39202 1.11956 1.36137 0.85363 0.78934 0.77330 0.78881 1.19540 1.20364 1.19176 1.20993 0.99925 0.90838 0.91748 1.19911 0.93543 0.94582 0.98615 1.21181 0.99566 0.93839 0.98696 1.21605 0.97653 0.94904 0.98128 1.21443 0.92786 1.00919 0.98301 1.21388 1.00844 0.90685 0.99091 1.16082 0.90299 0.92203 1.02004 1.19431 0.96632 0.98509 0.99913 1.22625 0.97775 0.96758 1.00201 1.18709 0.86761 0.94977 0.94655 1.58483 1.08056 1.13530 1.58628 0.91122 0.93856 0.96605 0.97441 1.02326 0.92553 0.90519 0.96199 0.85052 0.82535 0.82062 0.84165 0.89646 0.90400 0.82112 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.41 7.41 127.69 0.95 3.36 16 2 N -0.54 -26.18 4.74 -931.66 -4.42 -30.60 16 3 C 0.21 12.02 4.72 85.56 0.40 12.42 16 4 C -0.52 -31.53 8.46 25.60 0.22 -31.31 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 0.21 5.46 84.65 0.46 0.68 16 7 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 8 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 C 0.09 3.82 4.96 85.56 0.42 4.25 16 13 C -0.07 -2.27 5.18 -19.61 -0.10 -2.38 16 14 C -0.11 -3.25 9.66 22.23 0.21 -3.03 16 15 C -0.11 -2.24 10.04 22.32 0.22 -2.02 16 16 C -0.12 -2.30 10.03 22.23 0.22 -2.08 16 17 C -0.10 -2.51 9.75 22.52 0.22 -2.29 16 18 C -0.01 -0.17 4.82 -21.40 -0.10 -0.27 16 19 C -0.14 -4.86 8.80 30.02 0.26 -4.60 16 20 C -0.17 -5.46 11.14 31.13 0.35 -5.11 16 21 C 0.18 4.33 7.26 84.50 0.61 4.94 16 22 N -0.85 -18.15 9.60 -194.72 -1.87 -20.02 16 23 H 0.07 3.02 4.70 -2.39 -0.01 3.01 16 24 H 0.04 2.15 6.76 -2.39 -0.02 2.13 16 25 H 0.02 0.72 5.89 -2.38 -0.01 0.71 16 26 H 0.01 0.45 7.93 -2.38 -0.02 0.43 16 27 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.08 3.08 7.80 -2.39 -0.02 3.06 16 30 H 0.02 0.85 7.46 -2.39 -0.02 0.84 16 31 H 0.13 3.52 8.04 -2.91 -0.02 3.49 16 32 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.36 5.64 9.08 -89.69 -0.81 4.83 16 38 H 0.35 6.38 8.97 -89.69 -0.80 5.57 16 Total: -1.00 -72.43 316.80 -0.16 -72.60 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.54 Total: 15.02 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 4.35 Total: -27.44 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -6.00 Total: -108.08 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -72.43 -0.16 -72.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049608299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.215 kcal (2) G-P(sol) polarization free energy of solvation -72.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds