Wall clock time and date at job start Mon Mar 30 2020 04:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46508 * 119.99386 * 2 1 4 4 C 1.50697 * 109.46734 * 269.99564 * 3 2 1 5 5 H 1.07994 * 120.00663 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99738 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99666 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99912 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47499 * 89.99802 * 8 6 4 10 10 H 1.48502 * 109.46659 * 209.99865 * 8 6 4 11 11 H 1.48505 * 109.47016 * 329.99310 * 8 6 4 12 12 C 1.34770 * 120.00436 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99934 * 180.02562 * 12 2 1 14 14 C 1.50696 * 119.99923 * 0.02562 * 12 2 1 15 15 N 1.46900 * 109.47148 * 180.02562 * 14 12 2 16 16 C 1.48566 * 111.00074 * 170.00195 * 15 14 12 17 17 C 1.54372 * 104.59367 * 159.03824 * 16 15 14 18 18 H 1.09004 * 110.32577 * 95.04504 * 17 16 15 19 19 O 1.42903 * 110.32382 * 217.24984 * 17 16 15 20 20 C 1.54266 * 105.06543 * 336.14562 * 17 16 15 21 21 H 1.08996 * 110.32625 * 118.89426 * 20 17 16 22 22 O 1.42897 * 110.32274 * 241.10768 * 20 17 16 23 23 C 1.48567 * 111.00034 * 285.41588 * 15 14 12 24 24 H 1.08998 * 109.47261 * 270.00035 * 1 2 3 25 25 H 1.09000 * 109.47249 * 30.00518 * 1 2 3 26 26 H 1.09005 * 109.46147 * 150.00337 * 1 2 3 27 27 H 1.08995 * 109.47200 * 29.99985 * 3 2 1 28 28 H 1.09001 * 109.46966 * 150.00029 * 3 2 1 29 29 H 0.97006 * 119.99822 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47374 * 59.99730 * 14 12 2 31 31 H 1.09001 * 109.47520 * 299.99692 * 14 12 2 32 32 H 1.08996 * 110.40686 * 277.81685 * 16 15 14 33 33 H 1.08999 * 110.40972 * 40.13845 * 16 15 14 34 34 H 0.96706 * 113.99540 * 298.54644 * 19 17 16 35 35 H 0.96699 * 113.99760 * 179.97438 * 22 20 17 36 36 H 1.09004 * 110.40948 * 319.74003 * 23 15 14 37 37 H 1.08997 * 110.40880 * 82.18055 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1268 2.8776 -1.6728 7 7 3.5539 3.6178 -0.6732 8 14 3.4375 3.4171 -3.4340 9 1 2.3077 4.2605 -3.9000 10 1 4.6982 4.1995 -3.4968 11 1 3.5540 2.2201 -4.3051 12 6 2.1390 -1.1671 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3856 -2.4722 0.0005 15 7 2.3403 -3.5887 0.0018 16 6 1.6480 -4.8809 0.2426 17 6 2.6172 -5.9497 -0.3062 18 1 3.2405 -6.3437 0.4966 19 8 1.8876 -7.0063 -0.9335 20 6 3.4854 -5.2086 -1.3440 21 1 4.5347 -5.2387 -1.0505 22 8 3.3143 -5.7882 -2.6389 23 6 2.9675 -3.7544 -1.3348 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3632 -0.8901 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1386 0.5138 29 1 4.0307 4.4438 -0.8505 30 1 0.7593 -2.5302 -0.8896 31 1 0.7586 -2.5299 0.8903 32 1 1.4820 -5.0302 1.3095 33 1 0.7011 -4.9111 -0.2965 34 1 1.2903 -7.4793 -0.3379 35 1 3.8362 -5.3622 -3.3325 36 1 2.2281 -3.6091 -2.1224 37 1 3.7951 -3.0554 -1.4555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086331269.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:55 Heat of formation + Delta-G solvation = -143.780795 kcal Electronic energy + Delta-G solvation = -19904.504231 eV Core-core repulsion = 16681.221404 eV Total energy + Delta-G solvation = -3223.282826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 258.141 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09168 -39.96142 -36.94121 -36.86234 -36.37874 -34.73769 -31.85536 -29.85902 -29.14537 -27.59412 -26.89278 -24.56780 -22.62974 -21.75900 -20.03845 -19.11708 -18.70186 -17.94592 -17.39247 -17.19263 -16.90840 -16.58818 -16.09443 -15.55565 -15.27019 -15.09042 -14.51921 -14.25958 -13.99511 -13.81681 -13.55165 -13.50173 -13.42573 -13.12469 -12.83159 -12.67879 -12.53768 -12.47201 -12.21148 -11.72991 -11.62193 -11.26923 -10.83866 -10.65372 -10.57983 -9.57161 -9.40272 -8.23410 -6.38565 1.35164 1.38060 1.48209 1.85392 2.18963 2.38799 2.78854 3.05909 3.31983 3.34003 3.54940 3.58301 3.86249 4.10747 4.14842 4.21465 4.28862 4.45808 4.48866 4.59616 4.71903 4.81276 4.86112 4.94289 4.97102 5.00299 5.22059 5.54880 5.63351 5.73822 5.86882 6.05390 6.69345 6.71359 6.80405 6.98103 7.27846 7.51987 8.83551 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.027859 B = 0.004890 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.822535 B = 5725.030123 C = 6304.693209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.260 3.740 4 C -0.542 4.542 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.495 3.505 13 O -0.580 6.580 14 C 0.042 3.958 15 N -0.504 5.504 16 C 0.005 3.995 17 C 0.110 3.890 18 H 0.093 0.907 19 O -0.560 6.560 20 C 0.105 3.895 21 H 0.079 0.921 22 O -0.559 6.559 23 C 0.007 3.993 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.023 0.977 28 H -0.003 1.003 29 H 0.267 0.733 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.389 0.611 36 H 0.048 0.952 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -18.229 1.192 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.347 5.347 3 C 0.139 3.861 4 C -0.581 4.581 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.199 1.199 12 C 0.283 3.717 13 O -0.459 6.459 14 C -0.089 4.089 15 N -0.230 5.230 16 C -0.123 4.123 17 C 0.050 3.950 18 H 0.110 0.890 19 O -0.367 6.367 20 C 0.045 3.955 21 H 0.097 0.903 22 O -0.365 6.365 23 C -0.122 4.122 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.041 0.959 28 H 0.015 0.985 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.243 0.757 35 H 0.238 0.762 36 H 0.067 0.933 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.254 -18.133 1.464 19.585 hybrid contribution -0.005 1.133 -1.131 1.601 sum -7.259 -17.000 0.333 18.488 Atomic orbital electron populations 1.21936 0.77907 1.03862 1.02699 1.48197 1.08393 1.06321 1.71751 1.18728 0.91077 0.80362 0.95941 1.21682 1.36864 1.06556 0.92997 0.93077 1.25859 0.94872 0.96420 1.01961 1.70052 1.38922 1.14781 1.33043 0.85413 0.78129 0.78183 0.79059 1.18755 1.20578 1.19876 1.21145 0.88013 0.86177 0.76363 1.90624 1.16315 1.87799 1.51208 1.22169 0.93812 0.87946 1.04963 1.65015 1.27826 1.02627 1.27547 1.24028 0.96759 0.88050 1.03469 1.22604 0.92168 0.86974 0.93231 0.88951 1.86678 1.60660 1.48355 1.41002 1.22670 0.98804 0.89691 0.84355 0.90282 1.86609 1.71715 1.60253 1.17873 1.23844 0.99772 0.97923 0.90646 0.90849 0.91602 0.89105 0.95866 0.98517 0.92374 0.90105 0.84922 0.86951 0.91643 0.75714 0.76241 0.93350 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.26 10.24 127.77 1.31 3.57 16 2 N -0.61 -26.10 2.86 -851.11 -2.43 -28.53 16 3 C 0.26 14.23 5.16 85.63 0.44 14.67 16 4 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 6 C 0.01 0.46 5.46 84.66 0.46 0.92 16 7 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 8 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 9 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.49 20.68 7.52 87.66 0.66 21.34 16 13 O -0.58 -30.43 14.80 -3.03 -0.04 -30.47 16 14 C 0.04 1.18 3.87 85.56 0.33 1.51 16 15 N -0.50 -14.14 4.98 -886.06 -4.41 -18.55 16 16 C 0.00 0.09 6.19 86.45 0.53 0.62 16 17 C 0.11 2.19 4.42 31.49 0.14 2.33 16 18 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 19 O -0.56 -11.08 12.45 -128.55 -1.60 -12.68 16 20 C 0.10 2.57 4.42 31.49 0.14 2.71 16 21 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 22 O -0.56 -13.92 12.44 -128.55 -1.60 -15.52 16 23 C 0.01 0.20 5.66 86.45 0.49 0.69 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 26 H 0.09 1.97 6.44 -2.38 -0.02 1.95 16 27 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 28 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 29 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 30 H 0.08 1.98 7.03 -2.39 -0.02 1.97 16 31 H 0.13 2.79 8.05 -2.39 -0.02 2.77 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.14 7.94 -2.39 -0.02 1.12 16 34 H 0.39 3.62 9.11 -74.05 -0.67 2.95 16 35 H 0.39 6.82 9.12 -74.06 -0.68 6.15 16 36 H 0.05 1.44 7.69 -2.38 -0.02 1.42 16 37 H 0.07 2.41 7.24 -2.39 -0.02 2.39 16 Total: -1.00 -81.55 308.86 -3.29 -84.84 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -0.26 Total: 13.00 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 4.75 Total: 17.05 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -6.56 Total: -103.36 kcal Atomic # 8 Polarization: -55.43 SS G_CDS: -3.24 Total: -58.68 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -81.55 -3.29 -84.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086331269.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.940 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds