Wall clock time and date at job start Mon Mar 30 2020 04:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46792 * 2 1 4 4 O 1.42907 * 109.46679 * 240.00532 * 2 1 3 5 5 C 1.52992 * 109.47342 * 120.00488 * 2 1 3 6 6 H 1.08999 * 109.49753 * 304.93142 * 5 2 1 7 7 C 1.53041 * 109.49525 * 184.83630 * 5 2 1 8 8 C 1.53051 * 109.53571 * 178.68147 * 7 5 2 9 9 H 1.08995 * 109.49446 * 301.41273 * 8 7 5 10 10 N 1.46906 * 109.52042 * 181.33407 * 8 7 5 11 11 C 1.46903 * 110.99526 * 155.14745 * 10 8 7 12 12 C 1.53002 * 109.46767 * 179.97438 * 11 10 8 13 13 O 1.42902 * 109.46873 * 65.00150 * 12 11 10 14 14 C 1.53190 * 109.31337 * 61.36541 * 8 7 5 15 15 N 1.46929 * 108.77634 * 305.36680 * 14 8 7 16 16 C 1.36937 * 120.62797 * 233.63282 * 15 14 8 17 17 H 1.08001 * 119.99906 * 151.80949 * 16 15 14 18 18 C 1.38812 * 119.99578 * 331.79833 * 16 15 14 19 19 N 1.31606 * 120.00392 * 343.09682 * 18 16 15 20 20 Si 1.86809 * 119.99475 * 163.09323 * 18 16 15 21 21 H 1.48506 * 109.46798 * 60.00268 * 20 18 16 22 22 H 1.48499 * 109.46842 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47165 * 300.00179 * 20 18 16 24 24 C 1.46931 * 118.73903 * 53.60330 * 15 14 8 25 25 H 1.09001 * 109.47030 * 299.99466 * 1 2 3 26 26 H 1.08999 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47434 * 59.99381 * 1 2 3 28 28 H 0.96692 * 114.00132 * 59.99661 * 4 2 1 29 29 H 1.08992 * 109.46193 * 298.70068 * 7 5 2 30 30 H 1.08999 * 109.46109 * 58.66918 * 7 5 2 31 31 H 1.00901 * 110.99396 * 279.09613 * 10 8 7 32 32 H 1.09003 * 109.46991 * 299.99781 * 11 10 8 33 33 H 1.09002 * 109.47380 * 59.99756 * 11 10 8 34 34 H 1.09000 * 109.47182 * 184.99542 * 12 11 10 35 35 H 1.08998 * 109.47242 * 304.99947 * 12 11 10 36 36 H 0.96698 * 113.99767 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.58745 * 185.57398 * 14 8 7 38 38 H 1.09000 * 109.70177 * 65.22139 * 14 8 7 39 39 H 0.97006 * 120.00119 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.58085 * 186.60481 * 24 15 14 41 41 H 1.09002 * 109.58376 * 66.18667 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 1 1.6067 -0.2614 2.1372 7 6 3.5656 -0.6171 1.3119 8 6 4.0742 -1.3101 2.5782 9 1 3.6221 -0.8448 3.4541 10 7 5.5357 -1.1822 2.6545 11 6 6.0008 -1.2798 4.0446 12 6 7.5242 -1.1430 4.0834 13 8 7.8959 0.1674 3.6514 14 6 3.6923 -2.7929 2.5325 15 7 2.2416 -2.9015 2.3264 16 6 1.4695 -3.6443 3.1792 17 1 0.4316 -3.3870 3.3307 18 6 2.0208 -4.7282 3.8486 19 7 3.1562 -5.2493 3.4346 20 14 1.1511 -5.4472 5.3374 21 1 -0.1999 -5.9196 4.9410 22 1 1.9393 -6.5885 5.8677 23 1 1.0227 -4.4046 6.3870 24 6 1.6351 -2.1974 1.1883 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 1.7209 -0.2701 -1.9980 29 1 3.9989 -1.0988 0.4355 30 1 3.8575 0.4329 1.3305 31 1 5.9896 -1.8700 2.0722 32 1 5.5489 -0.4831 4.6356 33 1 5.7125 -2.2466 4.4572 34 1 7.8776 -1.3037 5.1019 35 1 7.9725 -1.8844 3.4220 36 1 8.8499 0.3253 3.6503 37 1 3.9644 -3.2695 3.4743 38 1 4.2157 -3.2820 1.7110 39 1 3.5416 -6.0065 3.9026 40 1 0.5498 -2.2812 1.2433 41 1 1.9907 -2.6359 0.2559 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108133525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:02 Heat of formation + Delta-G solvation = -85.777638 kcal Electronic energy + Delta-G solvation = -20711.779701 eV Core-core repulsion = 17626.845174 eV Total energy + Delta-G solvation = -3084.934526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.68879 -37.19842 -36.26633 -34.37176 -32.93488 -30.85648 -30.15209 -28.47794 -26.36170 -25.23765 -23.33603 -21.66132 -21.54954 -20.03183 -19.01703 -17.37479 -16.91699 -16.55048 -15.37046 -15.02058 -14.55731 -14.22056 -14.13738 -13.66145 -13.41582 -13.21272 -12.90616 -12.67618 -12.49376 -12.35877 -12.23286 -11.82672 -11.48601 -11.02061 -10.86763 -10.81576 -10.54704 -10.38624 -10.23906 -10.20200 -9.86898 -9.84539 -9.77262 -9.43695 -9.39645 -8.46028 -7.78040 -6.59034 -5.76331 -3.18949 3.37730 3.43143 3.44630 4.46452 4.49385 4.60304 4.65322 5.22165 5.29153 5.35420 5.37920 5.42671 5.45474 5.68998 5.71938 5.78876 5.87996 5.96994 6.05980 6.12868 6.14381 6.25159 6.34377 6.40034 6.49836 6.61936 6.80828 6.94039 6.97279 7.16259 7.31578 7.54479 7.73211 7.79239 7.81791 7.97567 7.99674 8.47154 9.23277 9.87632 10.45369 11.30945 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.010573 B = 0.009668 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.727300 B = 2895.485217 C = 5171.308474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.110 3.890 3 H 0.046 0.954 4 O -0.558 6.558 5 C -0.097 4.097 6 H 0.074 0.926 7 C -0.084 4.084 8 C 0.059 3.941 9 H 0.066 0.934 10 N -0.675 5.675 11 C 0.058 3.942 12 C 0.080 3.920 13 O -0.560 6.560 14 C 0.152 3.848 15 N -0.591 5.591 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.900 3.100 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.157 3.843 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.366 0.634 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.334 0.666 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.368 0.632 37 H 0.083 0.917 38 H 0.016 0.984 39 H 0.253 0.747 40 H 0.049 0.951 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 10.089 -3.247 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.050 3.950 3 H 0.064 0.936 4 O -0.362 6.362 5 C -0.118 4.118 6 H 0.092 0.908 7 C -0.122 4.122 8 C -0.052 4.052 9 H 0.084 0.916 10 N -0.305 5.305 11 C -0.071 4.071 12 C 0.002 3.998 13 O -0.363 6.363 14 C 0.024 3.976 15 N -0.313 5.313 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.031 3.969 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.211 0.789 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.152 0.848 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.213 0.787 37 H 0.101 0.899 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.256 10.278 -2.754 11.127 hybrid contribution -0.215 -1.148 0.682 1.353 sum 3.041 9.129 -2.073 9.843 Atomic orbital electron populations 1.22539 0.97079 1.03132 1.01536 1.21811 0.92193 0.94521 0.86442 0.93617 1.86650 1.76824 1.57322 1.15385 1.21739 0.96396 0.99258 0.94418 0.90815 1.21290 0.93848 0.99268 0.97810 1.22340 0.86065 0.99047 0.97764 0.91586 1.60661 1.06424 1.55403 1.08059 1.21961 0.92849 1.00645 0.91692 1.22231 0.95972 0.84359 0.97227 1.86645 1.27251 1.32222 1.90221 1.21408 0.84627 0.90419 1.01140 1.43978 1.03287 1.56020 1.28046 1.19162 0.94805 1.05893 1.18095 0.91768 1.25028 0.98025 0.96061 1.00635 1.70028 1.20712 1.24240 1.39856 0.86397 0.78996 0.78300 0.83271 1.20851 1.21677 1.21108 1.20883 0.96210 0.88943 0.90871 0.91877 0.91239 0.93164 0.78876 0.92108 0.93341 0.84845 0.90898 0.93282 0.93821 0.93888 0.78728 0.89909 0.96591 0.93734 0.93223 0.95216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 9.29 37.16 0.35 -2.04 16 2 C 0.11 1.62 3.26 -26.73 -0.09 1.53 16 3 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 4 O -0.56 -8.40 11.91 -35.23 -0.42 -8.82 16 5 C -0.10 -1.79 2.17 -90.51 -0.20 -1.98 16 6 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 7 C -0.08 -1.59 4.66 -26.68 -0.12 -1.71 16 8 C 0.06 1.19 2.62 -67.59 -0.18 1.02 16 9 H 0.07 1.42 7.80 -51.93 -0.41 1.01 16 10 N -0.68 -12.25 6.20 -106.59 -0.66 -12.91 16 11 C 0.06 0.96 5.87 -3.82 -0.02 0.94 16 12 C 0.08 1.07 7.33 37.16 0.27 1.34 16 13 O -0.56 -7.67 13.61 -35.23 -0.48 -8.15 16 14 C 0.15 3.68 4.56 -3.71 -0.02 3.66 16 15 N -0.59 -15.17 2.99 -172.32 -0.52 -15.68 16 16 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 17 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 18 C 0.00 0.02 4.92 -17.44 -0.09 -0.06 16 19 N -0.90 -26.39 11.20 55.49 0.62 -25.77 16 20 Si 0.90 21.87 29.59 -169.99 -5.03 16.84 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.16 3.46 5.29 -3.71 -0.02 3.44 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.00 6.70 -51.93 -0.35 0.65 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.37 3.69 9.08 45.56 0.41 4.10 16 29 H 0.06 1.22 7.85 -51.93 -0.41 0.82 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.33 6.00 8.42 -39.29 -0.33 5.67 16 32 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 33 H 0.05 0.87 7.56 -51.93 -0.39 0.47 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.37 3.12 9.12 45.56 0.42 3.54 16 37 H 0.08 2.22 5.53 -51.93 -0.29 1.94 16 38 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.05 1.07 6.65 -51.93 -0.35 0.73 16 41 H 0.03 0.71 7.40 -51.93 -0.38 0.32 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -32.35 321.76 -7.31 -39.65 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.42 Total: 10.96 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.26 Total: -0.97 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.56 Total: -54.36 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.90 Total: -16.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.35 -7.31 -39.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108133525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.124 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds