Wall clock time and date at job start Mon Mar 30 2020 04:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00081 * 2 1 4 4 C 1.53001 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47454 * 180.02562 * 4 3 2 6 6 O 1.42896 * 109.47202 * 179.97438 * 5 4 3 7 7 C 1.42902 * 113.99816 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46901 * 180.02562 * 7 6 5 9 9 O 1.42893 * 109.47050 * 65.00084 * 8 7 6 10 10 C 1.42902 * 113.99957 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47223 * 179.97438 * 10 9 8 12 12 C 1.50697 * 115.55029 * 294.87445 * 11 10 9 13 13 H 1.07997 * 119.99665 * 99.48226 * 12 11 10 14 14 C 1.37877 * 120.00356 * 279.20251 * 12 11 10 15 15 N 1.31522 * 119.99643 * 355.33780 * 14 12 11 16 16 Si 1.86797 * 120.00262 * 175.33855 * 14 12 11 17 17 H 1.48494 * 109.47123 * 59.99599 * 16 14 12 18 18 H 1.48495 * 109.47266 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46682 * 300.00013 * 16 14 12 20 20 C 1.53003 * 117.51599 * 80.57771 * 11 10 9 21 21 C 1.53000 * 117.49646 * 149.20627 * 11 10 9 22 22 H 1.08999 * 109.47103 * 59.99626 * 1 2 3 23 23 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47048 * 300.00316 * 1 2 3 25 25 H 1.09001 * 109.47398 * 60.00183 * 3 2 1 26 26 H 1.08995 * 109.47475 * 299.99997 * 3 2 1 27 27 H 1.08992 * 109.47608 * 60.00011 * 4 3 2 28 28 H 1.09008 * 109.46921 * 299.99981 * 4 3 2 29 29 H 1.09006 * 109.46803 * 59.99454 * 5 4 3 30 30 H 1.08999 * 109.46713 * 299.99961 * 5 4 3 31 31 H 1.09000 * 109.47326 * 59.99802 * 7 6 5 32 32 H 1.09003 * 109.47043 * 299.99671 * 7 6 5 33 33 H 1.08991 * 109.47276 * 304.99379 * 8 7 6 34 34 H 1.09001 * 109.46804 * 184.99648 * 8 7 6 35 35 H 1.09002 * 109.47130 * 59.99777 * 10 9 8 36 36 H 1.08995 * 109.47694 * 300.00133 * 10 9 8 37 37 H 0.97001 * 119.99689 * 179.97438 * 15 14 12 38 38 H 1.08991 * 117.50140 * 214.96955 * 20 11 10 39 39 H 1.09004 * 117.49632 * 359.97438 * 20 11 10 40 40 H 1.09005 * 117.50141 * 359.97438 * 21 11 10 41 41 H 1.08999 * 117.50386 * 144.97658 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5823 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2649 3.7249 0.0012 8 6 7.7758 3.4839 0.0004 9 8 8.1561 2.8480 -1.2214 10 6 9.5555 2.5772 -1.3247 11 6 9.8462 1.8990 -2.6650 12 6 9.2388 0.5319 -2.8469 13 1 8.3254 0.4177 -3.4118 14 6 9.8522 -0.5738 -2.2972 15 7 11.0138 -0.4489 -1.6931 16 14 9.0336 -2.2490 -2.4104 17 1 8.8485 -2.6140 -3.8378 18 1 9.8899 -3.2643 -1.7463 19 1 7.7112 -2.2002 -1.7365 20 6 9.9549 2.7940 -3.9012 21 6 11.2116 2.1563 -3.3054 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8464 0.8900 26 1 1.6887 1.8463 -0.8899 27 1 3.8568 0.6439 -0.8908 28 1 3.8574 0.6435 0.8892 29 1 3.8365 3.1227 0.8905 30 1 3.8359 3.1237 -0.8895 31 1 5.9870 4.2888 0.8916 32 1 5.9871 4.2903 -0.8884 33 1 8.0421 2.8438 0.8414 34 1 8.2959 4.4376 0.0908 35 1 9.8590 1.9184 -0.5111 36 1 10.1122 3.5122 -1.2619 37 1 11.4452 -1.2267 -1.3061 38 1 9.5871 2.3940 -4.8460 39 1 9.8189 3.8662 -3.7598 40 1 11.9028 2.8091 -2.7721 41 1 11.6709 1.3367 -3.8581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232211981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:20 Heat of formation + Delta-G solvation = -121.006515 kcal Electronic energy + Delta-G solvation = -19329.212309 eV Core-core repulsion = 16210.457393 eV Total energy + Delta-G solvation = -3118.754916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.166 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.42001 -37.87087 -37.10465 -35.42871 -32.84354 -31.79558 -29.52252 -27.11903 -25.95057 -24.84932 -24.63254 -22.17248 -21.49795 -20.95449 -19.04268 -17.00407 -16.67835 -16.27521 -16.25808 -15.76062 -15.07826 -14.98196 -14.65543 -14.38176 -14.27575 -13.72684 -13.48257 -12.84971 -12.34986 -12.22145 -11.96504 -11.62760 -11.42457 -11.24377 -11.10850 -10.98707 -10.78736 -10.69132 -10.48196 -10.37167 -10.08918 -9.86749 -9.44717 -9.29459 -8.99310 -8.53953 -8.27949 -7.98949 -5.90745 -3.93374 3.31705 3.43069 3.45980 3.52647 4.11887 4.43454 4.55559 4.83280 4.94292 5.09200 5.11804 5.16664 5.24584 5.31271 5.39422 5.40296 5.42909 5.46547 5.52253 5.53231 5.75559 5.86345 6.05555 6.12142 6.21331 6.22407 6.39850 6.50171 6.79383 6.81243 6.90170 6.96245 7.17312 7.41688 7.53733 7.61406 8.02639 8.24583 8.59729 9.06301 9.70745 11.18767 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.004798 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.940696 B = 5833.887123 C = 7084.385658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.122 4.122 5 C 0.067 3.933 6 O -0.368 6.368 7 C 0.070 3.930 8 C 0.060 3.940 9 O -0.364 6.364 10 C 0.109 3.891 11 C 0.046 3.954 12 C -0.477 4.477 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.274 1.274 20 C -0.207 4.207 21 C -0.151 4.151 22 H 0.041 0.959 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.013 0.987 37 H 0.258 0.742 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.031 7.760 5.495 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.010 4.010 4 C -0.160 4.160 5 C -0.010 4.010 6 O -0.287 6.287 7 C -0.007 4.007 8 C -0.017 4.017 9 O -0.283 6.283 10 C 0.032 3.968 11 C 0.045 3.955 12 C -0.515 4.515 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.525 5.525 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.244 4.244 21 C -0.189 4.189 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.804 7.251 5.446 17.360 hybrid contribution -0.495 -0.308 0.290 0.651 sum -15.298 6.943 5.736 17.752 Atomic orbital electron populations 1.22739 0.81082 1.02792 0.99853 1.87907 1.19612 1.27922 1.95388 1.22375 0.93818 0.84699 1.00101 1.21377 0.92117 0.97187 1.05271 1.22223 0.82456 0.96607 0.99689 1.88068 1.16628 1.28809 1.95214 1.22511 0.92191 0.86086 0.99887 1.22348 0.92608 0.96733 0.90034 1.88027 1.25723 1.79506 1.35023 1.22155 0.79365 0.95180 1.00079 1.18714 0.95842 0.93820 0.87114 1.20344 1.08599 0.89069 1.33519 0.92252 1.24952 0.94562 0.98758 0.95111 1.70003 1.14922 1.29997 1.37617 0.86697 0.79749 0.83629 0.78216 1.20354 1.21445 1.19913 1.22921 1.04932 0.96689 0.99857 1.22529 0.90777 1.01208 1.04387 0.94072 0.89595 0.94174 0.93326 0.93131 0.89681 0.90213 0.93798 0.93366 0.92744 0.92722 0.93174 0.93039 0.93010 0.96863 0.93195 0.90501 0.91777 0.92071 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.83 10.70 -35.23 -0.38 -5.21 16 3 C 0.07 0.72 5.94 37.16 0.22 0.94 16 4 C -0.12 -1.61 5.95 -26.73 -0.16 -1.77 16 5 C 0.07 0.87 5.94 37.16 0.22 1.09 16 6 O -0.37 -6.42 10.31 -40.09 -0.41 -6.83 16 7 C 0.07 1.04 6.32 37.16 0.23 1.28 16 8 C 0.06 1.06 6.32 37.16 0.23 1.29 16 9 O -0.36 -8.41 10.24 -40.09 -0.41 -8.82 16 10 C 0.11 2.62 5.76 37.16 0.21 2.83 16 11 C 0.05 1.19 1.61 -155.66 -0.25 0.94 16 12 C -0.48 -13.88 8.75 -34.44 -0.30 -14.18 16 13 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 14 C 0.07 1.96 5.44 -17.82 -0.10 1.86 16 15 N -0.89 -25.99 12.86 55.43 0.71 -25.28 16 16 Si 0.89 22.39 29.54 -169.99 -5.02 17.36 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 19 H -0.27 -6.96 7.11 56.52 0.40 -6.55 16 20 C -0.21 -4.80 9.96 -26.73 -0.27 -5.07 16 21 C -0.15 -3.69 9.39 -26.73 -0.25 -3.94 16 22 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.01 0.29 8.09 -51.93 -0.42 -0.13 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.08 2.20 8.14 -51.93 -0.42 1.77 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -32.57 348.13 -6.93 -39.49 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.58 Total: -2.62 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 0.91 Total: -13.34 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.71 Total: -25.28 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -1.20 Total: -20.86 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.57 -6.93 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232211981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.513 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds