Wall clock time and date at job start Mon Mar 30 2020 04:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47356 * 2 1 4 4 O 1.42904 * 109.47256 * 240.00265 * 2 1 3 5 5 C 1.53001 * 109.47203 * 120.00322 * 2 1 3 6 6 H 1.08998 * 109.49668 * 305.06630 * 5 2 1 7 7 C 1.53039 * 109.49549 * 185.00084 * 5 2 1 8 8 C 1.53041 * 109.53517 * 178.65085 * 7 5 2 9 9 H 1.08999 * 109.49708 * 181.34822 * 8 7 5 10 10 N 1.46898 * 109.49796 * 301.41167 * 8 7 5 11 11 C 1.46904 * 111.00122 * 205.00228 * 10 8 7 12 12 C 1.52998 * 109.46900 * 180.02562 * 11 10 8 13 13 O 1.42902 * 109.47364 * 64.99913 * 12 11 10 14 14 C 1.53191 * 109.31523 * 61.36721 * 8 7 5 15 15 N 1.46936 * 108.77332 * 305.36317 * 14 8 7 16 16 C 1.36929 * 120.62961 * 233.58912 * 15 14 8 17 17 H 1.07999 * 120.00001 * 151.84039 * 16 15 14 18 18 C 1.38810 * 120.00227 * 331.83534 * 16 15 14 19 19 N 1.31616 * 120.00035 * 343.07863 * 18 16 15 20 20 Si 1.86800 * 120.00005 * 163.07171 * 18 16 15 21 21 H 1.48498 * 109.47149 * 90.00431 * 20 18 16 22 22 H 1.48504 * 109.47500 * 210.00289 * 20 18 16 23 23 H 1.48495 * 109.47568 * 330.00710 * 20 18 16 24 24 C 1.46928 * 118.73693 * 53.60613 * 15 14 8 25 25 H 1.09000 * 109.47395 * 299.99819 * 1 2 3 26 26 H 1.09002 * 109.47155 * 60.00142 * 1 2 3 27 27 H 1.09000 * 109.47019 * 179.97438 * 1 2 3 28 28 H 0.96702 * 113.99632 * 300.00035 * 4 2 1 29 29 H 1.08998 * 109.46061 * 58.62813 * 7 5 2 30 30 H 1.09007 * 109.44913 * 298.66080 * 7 5 2 31 31 H 1.00904 * 110.99892 * 328.95364 * 10 8 7 32 32 H 1.08996 * 109.47058 * 60.00086 * 11 10 8 33 33 H 1.08997 * 109.46967 * 299.99910 * 11 10 8 34 34 H 1.08999 * 109.47543 * 304.99660 * 12 11 10 35 35 H 1.09002 * 109.46854 * 185.00078 * 12 11 10 36 36 H 0.96701 * 114.00098 * 179.97438 * 13 12 11 37 37 H 1.08993 * 109.59093 * 65.15086 * 14 8 7 38 38 H 1.08998 * 109.59050 * 185.58056 * 14 8 7 39 39 H 0.97003 * 120.00083 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.58575 * 186.59963 * 24 15 14 41 41 H 1.08999 * 109.69795 * 66.25148 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.6047 -0.2629 2.1372 7 6 3.5652 -0.6136 1.3142 8 6 4.0736 -1.3059 2.5809 9 1 5.1576 -1.2081 2.6388 10 7 3.4612 -0.6807 3.7607 11 6 4.3032 -0.8641 4.9505 12 6 3.6336 -0.2015 6.1561 13 8 2.4093 -0.8766 6.4517 14 6 3.6952 -2.7896 2.5341 15 7 2.2450 -2.9015 2.3259 16 6 1.4736 -3.6471 3.1768 17 1 0.4347 -3.3927 3.3268 18 6 2.0266 -4.7299 3.8463 19 7 3.1640 -5.2478 3.4336 20 14 1.1567 -5.4521 5.3333 21 1 0.2237 -6.5194 4.8910 22 1 2.1612 -6.0271 6.2637 23 1 0.3934 -4.3840 6.0274 24 6 1.6385 -2.1984 1.1873 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 -1.5952 -1.2330 29 1 3.8546 0.4370 1.3335 30 1 4.0007 -1.0943 0.4381 31 1 3.2757 0.2975 3.5963 32 1 5.2781 -0.4076 4.7795 33 1 4.4297 -1.9290 5.1454 34 1 3.4261 0.8438 5.9276 35 1 4.2981 -0.2599 7.0182 36 1 1.9301 -0.5093 7.2071 37 1 4.2209 -3.2750 1.7119 38 1 3.9669 -3.2659 3.4761 39 1 3.5507 -6.0043 3.9017 40 1 0.5532 -2.2847 1.2406 41 1 1.9943 -2.6350 0.2541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251680931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:07 Heat of formation + Delta-G solvation = -105.245827 kcal Electronic energy + Delta-G solvation = -21325.430801 eV Core-core repulsion = 18239.652071 eV Total energy + Delta-G solvation = -3085.778730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.40212 -38.33695 -37.45778 -35.79672 -34.20735 -32.33551 -31.76249 -29.73130 -28.12626 -27.16840 -24.71792 -23.65671 -22.72601 -21.68515 -20.10940 -18.58497 -18.37747 -17.41413 -16.83334 -16.46432 -16.27539 -16.12950 -15.73287 -15.13290 -14.86806 -14.63142 -14.30909 -14.28914 -13.78743 -13.71041 -13.33750 -13.02390 -12.80877 -12.71009 -12.67493 -12.50478 -12.24868 -11.95061 -11.87019 -11.76708 -11.50809 -11.40749 -11.05954 -10.79066 -10.52044 -10.41358 -9.00543 -8.47425 -7.74760 -5.15398 1.44750 1.48061 1.59112 2.58916 3.32834 3.41288 3.55460 3.56773 3.81633 3.95672 4.04852 4.21486 4.27794 4.35537 4.43575 4.49692 4.58694 4.62714 4.67502 4.73760 4.77586 4.89531 5.00907 5.05239 5.07165 5.19072 5.21211 5.30289 5.40374 5.50849 5.64347 5.70789 5.79890 6.31954 6.51445 6.81585 6.85165 7.11020 7.28199 8.01891 8.51708 9.30471 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.008998 C = 0.006982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.322973 B = 3110.946545 C = 4009.629944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.114 3.886 3 H 0.105 0.895 4 O -0.579 6.579 5 C -0.114 4.114 6 H 0.077 0.923 7 C -0.093 4.093 8 C 0.071 3.929 9 H 0.033 0.967 10 N -0.661 5.661 11 C 0.060 3.940 12 C 0.086 3.914 13 O -0.583 6.583 14 C 0.193 3.807 15 N -0.586 5.586 16 C -0.224 4.224 17 H 0.053 0.947 18 C -0.051 4.051 19 N -0.940 5.940 20 Si 0.956 3.044 21 H -0.287 1.287 22 H -0.299 1.299 23 H -0.277 1.277 24 C 0.152 3.848 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.380 0.620 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.337 0.663 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.385 0.615 37 H -0.014 1.014 38 H 0.048 0.952 39 H 0.243 0.757 40 H 0.049 0.951 41 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 14.805 -0.385 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.054 3.946 3 H 0.123 0.877 4 O -0.386 6.386 5 C -0.135 4.135 6 H 0.095 0.905 7 C -0.131 4.131 8 C -0.041 4.041 9 H 0.050 0.950 10 N -0.293 5.293 11 C -0.070 4.070 12 C 0.009 3.991 13 O -0.390 6.390 14 C 0.066 3.934 15 N -0.307 5.307 16 C -0.355 4.355 17 H 0.071 0.929 18 C -0.245 4.245 19 N -0.588 5.588 20 Si 0.786 3.214 21 H -0.214 1.214 22 H -0.226 1.226 23 H -0.202 1.202 24 C 0.026 3.974 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.229 0.771 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.232 0.768 37 H 0.004 0.996 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -0.033 14.347 -0.800 14.370 hybrid contribution 0.172 -0.658 1.374 1.533 sum 0.139 13.689 0.574 13.702 Atomic orbital electron populations 1.22455 0.95846 1.02526 1.02863 1.21947 0.93291 0.96018 0.83301 0.87726 1.86456 1.77862 1.29926 1.44395 1.22053 0.95792 0.96971 0.98664 0.90453 1.21478 0.95945 0.99709 0.95930 1.22077 0.94588 0.96832 0.90565 0.94957 1.60090 1.48256 1.18769 1.02227 1.21984 0.94127 0.99948 0.90912 1.22192 0.85892 0.95103 0.95953 1.86786 1.36996 1.60576 1.54602 1.20484 0.83868 0.91286 0.97738 1.43821 1.03453 1.55293 1.28165 1.19218 0.94268 1.04359 1.17670 0.92948 1.25500 0.98854 0.97267 1.02835 1.70173 1.22228 1.25197 1.41188 0.85425 0.77449 0.77824 0.80657 1.21441 1.22596 1.20216 1.20992 0.96167 0.91224 0.89011 0.91139 0.91219 0.92849 0.77092 0.90881 0.92501 0.84411 0.92741 0.94539 0.91912 0.92045 0.76756 0.99589 0.93330 0.94812 0.93290 0.97037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.18 9.30 71.98 0.67 -3.51 16 2 C 0.11 2.95 3.34 30.59 0.10 3.06 16 3 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 4 O -0.58 -16.44 12.80 -148.98 -1.91 -18.35 16 5 C -0.11 -3.69 2.01 -10.72 -0.02 -3.71 16 6 H 0.08 2.65 7.36 -2.39 -0.02 2.64 16 7 C -0.09 -2.98 4.43 30.62 0.14 -2.84 16 8 C 0.07 2.68 2.85 44.99 0.13 2.81 16 9 H 0.03 1.18 7.80 -2.39 -0.02 1.16 16 10 N -0.66 -23.48 5.41 -491.18 -2.66 -26.14 16 11 C 0.06 1.98 5.87 86.30 0.51 2.49 16 12 C 0.09 2.32 7.33 71.98 0.53 2.84 16 13 O -0.58 -19.69 13.61 -148.98 -2.03 -21.72 16 14 C 0.19 9.69 4.86 86.36 0.42 10.11 16 15 N -0.59 -30.01 2.91 -699.10 -2.04 -32.05 16 16 C -0.22 -12.91 9.58 84.03 0.81 -12.11 16 17 H 0.05 3.02 7.88 -2.91 -0.02 3.00 16 18 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16 19 N -0.94 -58.27 11.20 21.65 0.24 -58.03 16 20 Si 0.96 48.50 29.59 68.60 2.03 50.53 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 23 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 24 C 0.15 6.20 5.13 86.36 0.44 6.65 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.35 6.71 -2.39 -0.02 1.33 16 28 H 0.38 10.04 7.08 -74.06 -0.52 9.52 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 1.95 7.86 -2.38 -0.02 1.93 16 31 H 0.34 9.98 8.13 -89.69 -0.73 9.25 16 32 H 0.05 1.50 8.06 -2.39 -0.02 1.48 16 33 H 0.04 1.55 7.38 -2.39 -0.02 1.53 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.38 8.64 9.12 -74.06 -0.68 7.97 16 37 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 38 H 0.05 2.83 5.29 -2.39 -0.01 2.81 16 39 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.05 2.00 6.66 -2.39 -0.02 1.98 16 41 H 0.01 0.49 6.45 -2.39 -0.02 0.47 16 Total: -1.00 -72.41 317.51 -3.11 -75.52 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.89 Total: 27.02 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 4.13 Total: 3.21 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.45 Total: -116.21 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -3.93 Total: -40.07 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -72.41 -3.11 -75.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251680931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.721 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds