Wall clock time and date at job start Mon Mar 30 2020 04:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 O 1.42906 * 109.46699 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99821 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47177 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47234 * 64.99900 * 12 11 10 14 14 C 1.40464 * 110.99605 * 66.04807 * 13 12 11 15 15 C 1.54389 * 111.44797 * 187.82478 * 14 13 12 16 16 C 1.50721 * 109.13730 * 284.56667 * 15 14 13 17 17 O 1.44234 * 112.84915 * 91.52509 * 16 15 14 18 18 C 1.43941 * 116.11225 * 318.69219 * 17 16 15 19 19 H 1.09001 * 108.99349 * 79.78487 * 18 17 16 20 20 C 1.52999 * 108.99705 * 198.62309 * 18 17 16 21 21 N 1.46901 * 109.47049 * 300.00270 * 20 18 17 22 22 C 1.47594 * 111.00039 * 194.49498 * 13 12 11 23 23 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 25 25 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 26 26 H 1.09002 * 109.47367 * 300.00715 * 11 10 9 27 27 H 1.09000 * 109.46841 * 59.99911 * 11 10 9 28 28 H 1.09004 * 109.47021 * 185.00516 * 12 11 10 29 29 H 1.09000 * 109.46558 * 304.99780 * 12 11 10 30 30 H 1.09004 * 109.08544 * 308.32950 * 14 13 12 31 31 H 1.08994 * 109.08695 * 67.32085 * 14 13 12 32 32 H 1.08998 * 109.52872 * 44.46538 * 15 14 13 33 33 H 1.09006 * 109.52628 * 164.60359 * 15 14 13 34 34 H 1.08991 * 108.81383 * 212.39419 * 16 15 14 35 35 H 1.09006 * 108.80338 * 330.76886 * 16 15 14 36 36 H 1.09002 * 109.47317 * 60.00232 * 20 18 17 37 37 H 1.08997 * 109.46882 * 180.02562 * 20 18 17 38 38 H 1.00897 * 111.00032 * 56.04637 * 21 20 18 39 39 H 1.00899 * 110.99865 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.64262 * 272.67896 * 22 13 12 41 41 H 1.08998 * 109.63890 * 33.29884 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 8 3.9877 -2.5415 -0.0010 11 6 5.4122 -2.6544 -0.0021 12 6 5.8067 -4.1327 -0.0025 13 7 5.3664 -4.7567 -1.2574 14 6 6.0626 -4.2247 -2.3553 15 6 5.4772 -4.7277 -3.6925 16 6 5.9085 -6.1546 -3.9150 17 8 4.9655 -7.1127 -3.3924 18 6 4.3908 -6.8013 -2.1100 19 1 3.5894 -6.0753 -2.2473 20 6 3.8069 -8.0783 -1.5025 21 7 2.7692 -8.6143 -2.3935 22 6 5.4121 -6.2287 -1.1607 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6801 -0.8911 25 1 3.8751 -0.6805 0.8889 26 1 5.8144 -2.1711 -0.8925 27 1 5.8157 -2.1706 0.8874 28 1 6.8896 -4.2198 0.0863 29 1 5.3315 -4.6357 0.8397 30 1 5.9985 -3.1370 -2.3250 31 1 7.1096 -4.5208 -2.2909 32 1 4.3890 -4.6775 -3.6557 33 1 5.8434 -4.1040 -4.5080 34 1 6.0246 -6.3239 -4.9855 35 1 6.8715 -6.3105 -3.4287 36 1 4.5985 -8.8177 -1.3807 37 1 3.3689 -7.8510 -0.5306 38 1 3.1349 -8.7726 -3.3204 39 1 2.3680 -9.4589 -2.0143 40 1 6.4059 -6.5832 -1.4344 41 1 5.1780 -6.5363 -0.1416 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313356473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:56 Heat of formation + Delta-G solvation = -77.942311 kcal Electronic energy + Delta-G solvation = -20294.981215 eV Core-core repulsion = 17210.386454 eV Total energy + Delta-G solvation = -3084.594761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97877 -37.36027 -35.96751 -34.79550 -32.62695 -32.07967 -30.58261 -28.29608 -26.99869 -26.42657 -23.42360 -22.18509 -21.79153 -20.65100 -20.03279 -17.16484 -16.81331 -16.62664 -15.99318 -15.72550 -15.46736 -14.95092 -14.65502 -14.33260 -14.08455 -13.90409 -13.50408 -13.27276 -12.90541 -12.52577 -12.24543 -12.11812 -11.96477 -11.62805 -11.50153 -11.20155 -10.98134 -10.86222 -10.66886 -10.54119 -10.30213 -9.81929 -9.46936 -9.11849 -8.78451 -8.68403 -8.40720 -8.08152 -6.06470 -4.04778 3.26968 3.33755 3.34970 3.66165 3.81929 4.39120 4.52272 4.65214 4.77451 4.79170 4.93919 5.10248 5.22416 5.24492 5.25758 5.32127 5.39669 5.43246 5.50675 5.58344 5.66377 5.69855 5.78414 5.84999 5.95673 6.06054 6.12615 6.21856 6.31624 6.63869 7.03468 7.05957 7.09344 7.24396 7.44599 7.50210 7.65186 8.09620 8.73376 9.07253 9.53148 11.06731 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.004787 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.769882 B = 5848.009730 C = 6276.871525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.363 6.363 11 C 0.060 3.940 12 C 0.068 3.932 13 N -0.540 5.540 14 C 0.068 3.932 15 C -0.157 4.157 16 C 0.068 3.932 17 O -0.395 6.395 18 C 0.091 3.909 19 H 0.090 0.910 20 C 0.072 3.928 21 N -0.846 5.846 22 C 0.038 3.962 23 H 0.266 0.734 24 H -0.005 1.005 25 H 0.000 1.000 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.015 0.985 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.026 0.974 37 H 0.086 0.914 38 H 0.347 0.653 39 H 0.338 0.662 40 H 0.043 0.957 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.201 -13.624 -4.589 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.282 6.282 11 C -0.019 4.019 12 C -0.059 4.059 13 N -0.264 5.264 14 C -0.061 4.061 15 C -0.195 4.195 16 C -0.008 4.008 17 O -0.315 6.315 18 C 0.033 3.967 19 H 0.108 0.892 20 C -0.059 4.059 21 N -0.375 5.375 22 C -0.090 4.090 23 H 0.076 0.924 24 H 0.013 0.987 25 H 0.017 0.983 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.104 0.896 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.061 0.939 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.035 -13.010 -4.618 19.687 hybrid contribution 2.162 0.501 0.154 2.225 sum 16.197 -12.509 -4.464 20.946 Atomic orbital electron populations 1.69883 1.06030 1.26953 1.50593 1.24766 0.94776 0.98646 0.94797 0.86867 0.80314 0.83938 0.78690 1.20005 1.20837 1.19222 1.20898 0.88279 0.95308 1.50757 0.89869 1.20584 0.96243 0.79906 0.93995 1.88019 1.16605 1.28716 1.94850 1.22394 0.85939 0.94622 0.98901 1.22112 0.96863 0.95208 0.91765 1.58840 1.59853 1.04536 1.03179 1.21192 0.93643 1.00857 0.90412 1.22098 1.04013 0.96169 0.97231 1.22284 0.91280 0.88682 0.98604 1.88154 1.61069 1.47107 1.35181 1.22055 0.95291 0.96796 0.82521 0.89187 1.21877 0.92696 0.94788 0.96542 1.58620 1.35988 1.36447 1.06482 1.22361 0.98192 0.87520 1.00912 0.92446 0.98695 0.98275 0.94414 0.94082 0.94221 0.89805 0.89996 0.96668 0.89082 0.90159 0.89777 0.94048 0.95574 0.89605 0.83953 0.85010 0.93904 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 17.00 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.51 -15.58 9.99 -34.44 -0.34 -15.92 16 8 H 0.08 2.77 8.06 -52.49 -0.42 2.35 16 9 C 0.17 4.34 4.76 36.01 0.17 4.51 16 10 O -0.36 -8.54 10.27 -35.23 -0.36 -8.90 16 11 C 0.06 1.03 5.98 37.16 0.22 1.26 16 12 C 0.07 0.96 5.35 -3.82 -0.02 0.94 16 13 N -0.54 -7.84 3.99 -239.62 -0.96 -8.80 16 14 C 0.07 0.89 4.85 -6.43 -0.03 0.86 16 15 C -0.16 -1.92 5.67 -27.14 -0.15 -2.08 16 16 C 0.07 0.76 6.26 36.02 0.23 0.98 16 17 O -0.39 -5.14 9.86 -35.23 -0.35 -5.48 16 18 C 0.09 1.20 2.51 -27.87 -0.07 1.13 16 19 H 0.09 1.50 7.25 -51.93 -0.38 1.13 16 20 C 0.07 0.83 6.28 -3.82 -0.02 0.80 16 21 N -0.85 -9.62 9.62 -10.37 -0.10 -9.72 16 22 C 0.04 0.47 4.86 -4.58 -0.02 0.45 16 23 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 24 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 25 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 26 H 0.04 0.63 6.16 -51.93 -0.32 0.31 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.08 1.18 7.68 -51.93 -0.40 0.78 16 30 H 0.08 1.16 5.88 -51.93 -0.31 0.86 16 31 H 0.02 0.18 7.63 -51.93 -0.40 -0.22 16 32 H 0.09 1.36 7.25 -51.93 -0.38 0.98 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.44 6.60 -51.93 -0.34 0.09 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 38 H 0.35 3.84 8.36 -39.29 -0.33 3.51 16 39 H 0.34 3.05 9.08 -39.29 -0.36 2.69 16 40 H 0.04 0.49 6.85 -51.93 -0.36 0.14 16 41 H 0.09 0.99 7.08 -51.93 -0.37 0.62 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -33.07 317.55 -7.83 -40.90 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.81 Total: 2.53 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.14 Total: -5.03 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.28 Total: -45.80 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.71 Total: -14.39 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.07 -7.83 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313356473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.040 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds